mRNA_P-wetherbeei_contig1633.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1633.1.2
Unique NamemRNA_P-wetherbeei_contig1633.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1633.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1633contigP-wetherbeei_contig1633:5..4369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size2783
Hectar predicted targeting categoryother localisation
Exons5
Cds size2781
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186083.6484268-CDS-P-wetherbeei_contig1633:4..4601683186083.6484268-CDS-P-wetherbeei_contig1633:4..460Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1633 5..460 +
1683186083.6588328-CDS-P-wetherbeei_contig1633:865..16601683186083.6588328-CDS-P-wetherbeei_contig1633:865..1660Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1633 866..1660 +
1683186083.6688263-CDS-P-wetherbeei_contig1633:2116..23541683186083.6688263-CDS-P-wetherbeei_contig1633:2116..2354Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1633 2117..2354 +
1683186083.6783087-CDS-P-wetherbeei_contig1633:2890..32101683186083.6783087-CDS-P-wetherbeei_contig1633:2890..3210Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1633 2891..3210 +
1683186083.68805-CDS-P-wetherbeei_contig1633:3396..43681683186083.68805-CDS-P-wetherbeei_contig1633:3396..4368Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1633 3397..4368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1633.1.2prot_P-wetherbeei_contig1633.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1633 5..4368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1633.1.2

>prot_P-wetherbeei_contig1633.1.2 ID=prot_P-wetherbeei_contig1633.1.2|Name=mRNA_P-wetherbeei_contig1633.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=927bp
GGGGFSAFIYEGAHAAAATILCALRGARFLRVCCARCSLNATDVAAALVF
LRGGFCFLDDSFFSVACLRADCYGQRLDCNRTSAGPDVLPDGMLSCRAAI
CYCRSPKRGIVAPGRFSWMQLLEQVLWLHGDHWAHETHVLFLQFLQKGGL
GQVSRCLKHLLGDADFQRHDGSGSPFSTTGELFGVAFEAFQRLVERALFW
VQSVAAHTGAATAAADAADAADDTNNDAESGAGCSDGGSDGRGGGGGGGS
GGGGIASVTAAKAAYDSAAAMVSQWSSLDVAAVALFAHMCGLARFLNARA
LVCLRSSGHHHRHTRVGCDGGGGGGSIGGGSGIGGGIGCIGGGSGIGGGI
GCIGDGIGDIGGIGGMGGSSGYTAAGGQPWLFVEDGRYSASQLLQAIPRA
LFRLVQLDKKVAFVMAENVYVETLRGVVPRLATAAKGAPDAGASVDGGDG
GGDGGPYFLLANPLSWLGRHLLSWAQCLVGLEGELARMRGATVARLSIAL
VHMALLRGDWTEACEICAQLLNDLDDLLRRGGGSGGEDVCIGRAVTAFAG
DLFWIVASDCHRSLPGGGGGGSSGGGVGGPHYSCAVLVRNESVFRLLDAL
AEKALGDIARDDMQFFVSEAAGAFSDAVEAFAALVGYEDEMAAAAQAAQA
AQAAATAQMAHGTAQMAHGAVERLAAQEKGDGAVGDGGASGEANDNGGDE
GDGANRGGGVAATTMTTSDSASRMEEEANTPAAEPAPSGALPATAAVRDV
APDAPPPETAAAADTGGCGDGEGHGTSGGGSSCKRRKAALSHGDEIAAAF
ANLDAAMRWLFLFGARADYREGMCDFCSPSFEQLRRLAAGRDDNYGKIAE
GVLSYTQRTSPLRAALAAAAAAADWVRDDGEREAVATGAAAAEAAAAARE
AAASVAIGGEPAWGPPCAPPGMEEETA
back to top

mRNA from alignment at P-wetherbeei_contig1633:5..4369+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1633.1.2 ID=mRNA_P-wetherbeei_contig1633.1.2|Name=mRNA_P-wetherbeei_contig1633.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4365bp|location=Sequence derived from alignment at P-wetherbeei_contig1633:5..4369+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGGGGGGGGGTTCTCCGCGTTCATATATGAAGGAGCTCACGCCGCAGC
CGCTACCATCCTTTGCGCTTTGCGTGGTGCCCGCTTTCTCCGAGTGTGCT
GCGCCCGCTGCTCGCTGAACGCCACCGATGTTGCCGCCGCCCTCGTCTTT
TTGCGTGGCGGCTTCTGTTTCCTCGACGACTCTTTCTTTTCTGTCGCCTG
CCTGCGTGCTGACTGTTATGGGCAACGACTGGACTGTAACCGGACTTCGG
CCGGCCCGGACGTTTTACCGGACGGGATGTTATCGTGCCGGGCCGCAATT
TGCTATTGTCGCTCTCCTAAACGGGGAATTGTTGCACCGGGCCGCTTCTC
GTGGATGCAGCTGCTGGAGCAGGTGCTGTGGCTGCACGGTGACCACTGGG
CGCACGAGACGCACGTGCTGTTCCTGCAATTCCTGCAGAAGGGCGGGCTC
GGTCAGGTGAGCCTGCCGGTTGATCGGCCGTTTAGCCGCTTTCTTCAGCC
GTTTCAGGGAGCCGTTTTTCAGATTCTCGACTGTCTTCATCGGCGAACCG
TTTTCAACTGCTGGCTGTTTTAATTCGGCCCACTGCTTTTAACGGCCGGC
TGTCTTCATTGGCCACCTAGATGGCTAGCCGCTTTATCTGCTGGCCGTTT
TATTTGCGACAGGGTGCCGAGAGGAAGAAAATGCGTTACAGAAGGAGAAA
ATGGGAGGACAGAGGAAAGGGAGGGAAACAGCGAAACAACGCTTGCTATC
CTGGCCCCCGCTCAGTGGCTGATCCCTCGTTTATACCGCGGCTGCCGCCG
TTTATTCCCCGCCCGCTCCCTTGTTTTCCGTATTACTTTCTGTATTTACT
TCTTTCTTCAGGTGAGCCGCTGCCTGAAGCACCTGCTCGGCGACGCAGAC
TTCCAGCGACATGACGGGAGCGGCAGCCCGTTCTCAACCACTGGCGAGCT
GTTCGGCGTCGCCTTCGAGGCGTTCCAGCGGCTTGTGGAGCGTGCACTGT
TCTGGGTCCAGAGCGTCGCTGCCCACACCGGGGCCGCCACCGCCGCCGCC
GACGCCGCCGACGCTGCTGACGACACCAACAACGATGCGGAGAGCGGCGC
AGGCTGCAGTGACGGCGGCAGTGACGGCCGCGGCGGCGGGGGCGGCGGCG
GCAGTGGCGGGGGCGGCATTGCGTCGGTCACCGCCGCGAAGGCTGCTTAC
GACAGCGCGGCCGCGATGGTGAGCCAGTGGAGCTCCCTTGATGTGGCGGC
GGTGGCGCTCTTCGCGCATATGTGCGGCCTCGCGCGGTTCCTCAACGCAC
GGGCGCTAGTCTGCCTCCGCTCCTCCGGGCACCACCACCGCCACACGCGG
GTCGGCTGCGACGGCGGCGGCGGCGGCGGCAGCATTGGCGGCGGTAGCGG
CATTGGCGGTGGCATTGGTTGCATCGGCGGCGGTAGCGGCATTGGCGGCG
GCATTGGTTGCATCGGCGACGGCATCGGCGACATCGGCGGCATCGGCGGC
ATGGGCGGCAGCAGCGGTTACACGGCGGCGGGCGGCCAGCCGTGGCTGTT
TGTGGAGGACGGCAGATACTCGGCGTCGCAGCTGCTGCAGGCCATTCCGA
GGGCTCTCTTCCGCCTCGTGCAGCTTGACAAGAAGGTGGCGTTCGTCATG
GCTGAGGTGAGCTTGTTTCTTTTTCCGTTTGCGGTTGTTGCAGCATCGCC
TGTCGTTGCTGGCGTTTTACTTTAGTTTTCCGCACTTTTCGCCACCTGTC
CACGCCGTCCTTGTCGTGACCGCGGTTGGCTCCCGGCGCGGGCCGCAGCG
GCGGCGGCTCCCCCCCTCCTGCGTGCGTGGTCTTCCGGATTCGAGAAATC
GCAACCGCCGATAGGACATGAGAGCGCTCGACTCTTGTTACGTTGCGGCG
GTTTAATAACGATGAGCGTGTCTCTGAGGGATTTCTTGTTTATACGAAGG
GGAAAAGAAACGGGGGACGATGAAGAAAACGGGCCGCTGCCGAATCGTGT
TCCAAGCCGACCGCCCGGCAGGCCATCTAATCTCAAACCAGCCTCTATTA
ATAATGCTTTCCGCTCTCGCGGGGGCGGGGGCGTTTTCTCTCCGCGCGGT
TTCCCTCCGCAGAACGTCTACGTCGAAACGCTGCGTGGCGTCGTGCCGCG
GCTGGCGACGGCGGCGAAGGGAGCTCCCGATGCCGGCGCCAGCGTCGATG
GCGGCGACGGCGGCGGCGACGGCGGCCCCTACTTCCTCTTGGCCAACCCG
CTGAGCTGGCTGGGGCGTCACCTGCTGAGCTGGGCGCAGTGCCTCGTTGG
CCTCGAGGGCGAGCTCGCGCGGATGCGGGGCGCGACCGTCGCTCGCCTCT
GTGAGTGTTTTTGTGTGCGATTTTAACACCAGGCTGGCTTTGCTTAGGGC
CTTGTGTGGTCCGCGATGGGTCGGTTCGCCGCCGGTCGGTCAGTGGATAT
GAATTTTCTTGGCTGTTGTCGGCGGGGCGGCTGGGCGGCCGGCCGTCGTT
GCTGGGAGGTTAGGCGAGACTTGCGCAGCTTTTGCCTTTTTTAATTGGAA
AATCAGGTTTTCGGAGCTTTTGGTGTAGCAGGTTTCCACTTGCTCACATT
TCGCCTGCGCCAGGGAGGTCTATTAGTCATTCGAAGTTGCTGGCCACTCG
GTCTCTCCCTTTCTGTCTTTCTCTTGCTCTTTCTGTTACGTCTTTTGCGC
ATCCACTGATTGACACTTCTAGAATCCCCCTCCTCCATCGCTTCACCCTT
GTTGCGGCGGCGGCAATCGGCGGCGACGGGTTGCTGCGGCGGTGGCAATT
GGCGGCGGCCTTCGGCGGTGACGGAAAATCGGCGGAAATCTGCAATCGCC
CGCGGTGAATATGGTGGCGACGACGACGCCGTGCAGCCATCGCCCTGGTG
CACATGGCGCTGCTCCGCGGGGACTGGACCGAGGCGTGCGAGATCTGCGC
ACAATTGCTCAATGATTTGGACGACCTACTGAGGCGCGGCGGCGGCAGCG
GTGGCGAAGACGTGTGCATCGGGCGCGCCGTCACGGCCTTCGCCGGCGAT
CTCTTTTGGATCGTCGCGTCAGACTGCCACCGGAGCCTGCCCGGCGGCGG
CGGCGGTGGCAGCAGCGGCGGAGGGGTGGGCGGGCCGCACTACTCGTGCG
CGGTGCTGGTGCGAAACGAGAGTGTCTTCAGGCTGCTCGACGCGCTGGCG
GAGAAGGTAGGTGTGGGCAGATCGTCTTCCCCTCTTCTTTCTGTCTTTCG
TTTGCCGTTTGCCTATTGAGGTTCTCGTAAACCTCGTTAAAGTCCAGCAT
ATTCCCGGTGGGTACGGTTCATCTTGTTCAAGCGAGAGACAGACATTCTC
AATTCAATTCGGACGGCATTACTTCGGGTTCGTCACGCGCAGGCGCTCGG
CGATATCGCACGGGACGATATGCAGTTCTTCGTCTCCGAGGCGGCAGGCG
CCTTCAGCGATGCAGTGGAGGCATTCGCTGCGCTGGTTGGCTACGAAGAC
GAGATGGCGGCGGCGGCGCAGGCGGCGCAGGCGGCGCAGGCGGCGGCGAC
CGCGCAAATGGCGCATGGGACGGCGCAAATGGCGCATGGGGCGGTAGAGC
GCCTTGCAGCGCAGGAAAAGGGCGATGGCGCCGTCGGTGACGGAGGCGCT
AGCGGCGAAGCCAATGATAATGGCGGCGATGAAGGTGATGGCGCCAATAG
AGGCGGCGGCGTCGCTGCGACCACAATGACGACATCGGACAGCGCCAGCC
GTATGGAAGAGGAAGCCAACACCCCGGCGGCGGAGCCAGCGCCGTCTGGG
GCCCTTCCCGCAACGGCTGCTGTGCGAGACGTTGCGCCTGACGCGCCACC
GCCGGAGACGGCCGCTGCTGCCGACACTGGTGGTTGCGGCGACGGCGAGG
GCCATGGCACCAGCGGCGGCGGCAGTTCCTGTAAGAGGCGCAAGGCGGCG
CTGTCGCACGGCGATGAGATTGCAGCCGCATTCGCGAACCTCGACGCTGC
CATGCGGTGGCTTTTCCTCTTCGGCGCCCGCGCCGACTACCGTGAGGGGA
TGTGCGACTTCTGCTCGCCGTCGTTCGAGCAGCTGCGGCGGCTTGCCGCC
GGGCGCGACGATAACTATGGTAAGATTGCCGAGGGTGTGCTGAGCTACAC
TCAGCGCACGTCGCCCCTGCGGGCGGCGCTGGCGGCGGCGGCGGCGGCGG
CGGATTGGGTGAGGGACGATGGGGAGCGGGAGGCGGTGGCGACGGGGGCG
GCGGCAGCCGAGGCAGCGGCGGCGGCCCGCGAGGCGGCGGCGTCGGTGGC
GATCGGCGGTGAGCCGGCGTGGGGACCGCCTTGCGCGCCGCCGGGGATGG
AGGAGGAGACGGCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1633:5..4369+

>mRNA_P-wetherbeei_contig1633.1.2 ID=mRNA_P-wetherbeei_contig1633.1.2|Name=mRNA_P-wetherbeei_contig1633.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2781bp|location=Sequence derived from alignment at P-wetherbeei_contig1633:5..4369+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGGGGGGGGGTTCTCCGCGTTCATATATGAAGGAGCTCACGCCGCAGC
CGCTACCATCCTTTGCGCTTTGCGTGGTGCCCGCTTTCTCCGAGTGTGCT
GCGCCCGCTGCTCGCTGAACGCCACCGATGTTGCCGCCGCCCTCGTCTTT
TTGCGTGGCGGCTTCTGTTTCCTCGACGACTCTTTCTTTTCTGTCGCCTG
CCTGCGTGCTGACTGTTATGGGCAACGACTGGACTGTAACCGGACTTCGG
CCGGCCCGGACGTTTTACCGGACGGGATGTTATCGTGCCGGGCCGCAATT
TGCTATTGTCGCTCTCCTAAACGGGGAATTGTTGCACCGGGCCGCTTCTC
GTGGATGCAGCTGCTGGAGCAGGTGCTGTGGCTGCACGGTGACCACTGGG
CGCACGAGACGCACGTGCTGTTCCTGCAATTCCTGCAGAAGGGCGGGCTC
GGTCAGGTGAGCCGCTGCCTGAAGCACCTGCTCGGCGACGCAGACTTCCA
GCGACATGACGGGAGCGGCAGCCCGTTCTCAACCACTGGCGAGCTGTTCG
GCGTCGCCTTCGAGGCGTTCCAGCGGCTTGTGGAGCGTGCACTGTTCTGG
GTCCAGAGCGTCGCTGCCCACACCGGGGCCGCCACCGCCGCCGCCGACGC
CGCCGACGCTGCTGACGACACCAACAACGATGCGGAGAGCGGCGCAGGCT
GCAGTGACGGCGGCAGTGACGGCCGCGGCGGCGGGGGCGGCGGCGGCAGT
GGCGGGGGCGGCATTGCGTCGGTCACCGCCGCGAAGGCTGCTTACGACAG
CGCGGCCGCGATGGTGAGCCAGTGGAGCTCCCTTGATGTGGCGGCGGTGG
CGCTCTTCGCGCATATGTGCGGCCTCGCGCGGTTCCTCAACGCACGGGCG
CTAGTCTGCCTCCGCTCCTCCGGGCACCACCACCGCCACACGCGGGTCGG
CTGCGACGGCGGCGGCGGCGGCGGCAGCATTGGCGGCGGTAGCGGCATTG
GCGGTGGCATTGGTTGCATCGGCGGCGGTAGCGGCATTGGCGGCGGCATT
GGTTGCATCGGCGACGGCATCGGCGACATCGGCGGCATCGGCGGCATGGG
CGGCAGCAGCGGTTACACGGCGGCGGGCGGCCAGCCGTGGCTGTTTGTGG
AGGACGGCAGATACTCGGCGTCGCAGCTGCTGCAGGCCATTCCGAGGGCT
CTCTTCCGCCTCGTGCAGCTTGACAAGAAGGTGGCGTTCGTCATGGCTGA
GAACGTCTACGTCGAAACGCTGCGTGGCGTCGTGCCGCGGCTGGCGACGG
CGGCGAAGGGAGCTCCCGATGCCGGCGCCAGCGTCGATGGCGGCGACGGC
GGCGGCGACGGCGGCCCCTACTTCCTCTTGGCCAACCCGCTGAGCTGGCT
GGGGCGTCACCTGCTGAGCTGGGCGCAGTGCCTCGTTGGCCTCGAGGGCG
AGCTCGCGCGGATGCGGGGCGCGACCGTCGCTCGCCTCTCCATCGCCCTG
GTGCACATGGCGCTGCTCCGCGGGGACTGGACCGAGGCGTGCGAGATCTG
CGCACAATTGCTCAATGATTTGGACGACCTACTGAGGCGCGGCGGCGGCA
GCGGTGGCGAAGACGTGTGCATCGGGCGCGCCGTCACGGCCTTCGCCGGC
GATCTCTTTTGGATCGTCGCGTCAGACTGCCACCGGAGCCTGCCCGGCGG
CGGCGGCGGTGGCAGCAGCGGCGGAGGGGTGGGCGGGCCGCACTACTCGT
GCGCGGTGCTGGTGCGAAACGAGAGTGTCTTCAGGCTGCTCGACGCGCTG
GCGGAGAAGGCGCTCGGCGATATCGCACGGGACGATATGCAGTTCTTCGT
CTCCGAGGCGGCAGGCGCCTTCAGCGATGCAGTGGAGGCATTCGCTGCGC
TGGTTGGCTACGAAGACGAGATGGCGGCGGCGGCGCAGGCGGCGCAGGCG
GCGCAGGCGGCGGCGACCGCGCAAATGGCGCATGGGACGGCGCAAATGGC
GCATGGGGCGGTAGAGCGCCTTGCAGCGCAGGAAAAGGGCGATGGCGCCG
TCGGTGACGGAGGCGCTAGCGGCGAAGCCAATGATAATGGCGGCGATGAA
GGTGATGGCGCCAATAGAGGCGGCGGCGTCGCTGCGACCACAATGACGAC
ATCGGACAGCGCCAGCCGTATGGAAGAGGAAGCCAACACCCCGGCGGCGG
AGCCAGCGCCGTCTGGGGCCCTTCCCGCAACGGCTGCTGTGCGAGACGTT
GCGCCTGACGCGCCACCGCCGGAGACGGCCGCTGCTGCCGACACTGGTGG
TTGCGGCGACGGCGAGGGCCATGGCACCAGCGGCGGCGGCAGTTCCTGTA
AGAGGCGCAAGGCGGCGCTGTCGCACGGCGATGAGATTGCAGCCGCATTC
GCGAACCTCGACGCTGCCATGCGGTGGCTTTTCCTCTTCGGCGCCCGCGC
CGACTACCGTGAGGGGATGTGCGACTTCTGCTCGCCGTCGTTCGAGCAGC
TGCGGCGGCTTGCCGCCGGGCGCGACGATAACTATGGTAAGATTGCCGAG
GGTGTGCTGAGCTACACTCAGCGCACGTCGCCCCTGCGGGCGGCGCTGGC
GGCGGCGGCGGCGGCGGCGGATTGGGTGAGGGACGATGGGGAGCGGGAGG
CGGTGGCGACGGGGGCGGCGGCAGCCGAGGCAGCGGCGGCGGCCCGCGAG
GCGGCGGCGTCGGTGGCGATCGGCGGTGAGCCGGCGTGGGGACCGCCTTG
CGCGCCGCCGGGGATGGAGGAGGAGACGGCG
back to top