mRNA_P-wetherbeei_contig1632.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1632.4.1
Unique NamemRNA_P-wetherbeei_contig1632.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1632.4.1 vs. uniprot
Match: A0A835Z588_9STRA (CCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z588_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.200e-24
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 3 
Query:  516 VLPHLLAKYADVYNKHGRIGIYNRAEREAILERFRHKRRRRVFRKKIRYSCRKNLADKRLRIKGRFVRMSAEQRAALELELAGGGG 773
             LPHLL KYADVYN+ GRIGIY   EREAI+ R+R KR RRV+RKKIRY+CRKNLADKRLR+KGRFV+M+  QRAAL+L+++ G G
Sbjct:  273 TLPHLLHKYADVYNRSGRIGIYTLQEREAIIARYRAKRARRVWRKKIRYNCRKNLADKRLRVKGRFVKMTPAQRAALQLQISAGDG 358
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BLAST of mRNA_P-wetherbeei_contig1632.4.1 vs. uniprot
Match: A0A835ZBX8_9STRA (CCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX8_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.000e-23
Identity = 64/95 (67.37%), Postives = 77/95 (81.05%), Query Frame = 3 
Query:  483 NGGDASG--VDCGVLPHLLAKYADVYNKHGRIGIYNRAEREAILERFRHKRRRRVFRKKIRYSCRKNLADKRLRIKGRFVRMSAEQRAALELELA 761
            +G DA+G       LPHLL+KY DVYN++GRIGIY   EREAI+ RF+ KR RRV+RKKIRY+CRKNLADKRLRIKGRFV+M+  QRAAL+L+ A
Sbjct:  270 DGDDAAGSAATAVTLPHLLSKYTDVYNRNGRIGIYTAQEREAIIARFKAKRLRRVWRKKIRYNCRKNLADKRLRIKGRFVKMTPAQRAALQLQRA 364
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BLAST of mRNA_P-wetherbeei_contig1632.4.1 vs. uniprot
Match: K8YW04_NANGC (CCT domain-containing protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YW04_NANGC)

HSP 1 Score: 112 bits (280), Expect = 2.730e-22
Identity = 53/73 (72.60%), Postives = 67/73 (91.78%), Query Frame = 3 
Query:  516 VLPHLLAKYADVYNKHGRIGIYNRAEREAILERFRHKRRRRVFRKKIRYSCRKNLADKRLRIKGRFVRMSAEQ 734
            +LPH+LAKY+DVYNKHGRIGIY R ER+AI+ RFR KR+RRV++KKIRYSCRKNLADKR+R+KGRFV++  ++
Sbjct:  440 ILPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKE 512
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BLAST of mRNA_P-wetherbeei_contig1632.4.1 vs. uniprot
Match: A0A4D9CLM4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLM4_9STRA)

HSP 1 Score: 112 bits (280), Expect = 9.410e-22
Identity = 53/73 (72.60%), Postives = 67/73 (91.78%), Query Frame = 3 
Query:  516 VLPHLLAKYADVYNKHGRIGIYNRAEREAILERFRHKRRRRVFRKKIRYSCRKNLADKRLRIKGRFVRMSAEQ 734
            +LPH+LAKY+DVYNKHGRIGIY R ER+AI+ RFR KR+RRV++KKIRYSCRKNLADKR+R+KGRFV++  ++
Sbjct:  798 ILPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKE 870
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BLAST of mRNA_P-wetherbeei_contig1632.4.1 vs. uniprot
Match: D8LD77_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD77_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 3.320e-21
Identity = 55/73 (75.34%), Postives = 67/73 (91.78%), Query Frame = 3 
Query:  537 KYADVYNKHGRIGIYNRAEREAILERFRHKRRRRVFRKKIRYSCRKNLADKRLRIKGRFVRMSAEQRAALELE 755
            +YAD+YNK+GRIGIY R EREAI+ RF+ KR RRV++KKIRY+CRKNLADKRLR+KGRFV+MS EQRAAL+L+
Sbjct:  380 RYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLK 452
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BLAST of mRNA_P-wetherbeei_contig1632.4.1 vs. uniprot
Match: A0A7S1Z2T2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2T2_TRICV)

HSP 1 Score: 103 bits (257), Expect = 1.270e-20
Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 3 
Query:  519 LPHLLAKYADVYNKHGRIGIYNRAEREAILERFRHKRRRRVFRKKIRYSCRKNLADKRLRIKGRFVRMSAEQRAALELEL 758
            LPH L+KY +VYNK+GRIGIY  AER AI+ +F  KR RRV+ KKIRY+CRKNLAD+R+R+KGRFV+ S EQ A L+ +L
Sbjct:  215 LPHSLSKYKEVYNKNGRIGIYTPAERAAIIAKFNSKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAQLKAQL 294
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BLAST of mRNA_P-wetherbeei_contig1632.4.1 vs. uniprot
Match: A0A7S2YJJ2_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YJJ2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.480e-20
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 3 
Query:  516 VLPHLLAKYADVYNKHGRIGIYNRAEREAILERFRHKRRRRVFRKKIRYSCRKNLADKRLRIKGRFVRMSAEQRAALELE 755
             LPH L KY +VYN++GRIGIY  +ER AI+ RF  KR+RRV+ KKIRY CRKNLAD+RLR+KGRFV+ S ++  A EL+
Sbjct:   38 TLPHSLGKYKEVYNRNGRIGIYTPSERAAIIARFNKKRQRRVWNKKIRYGCRKNLADRRLRVKGRFVKRSEQELLAKELQ 117
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BLAST of mRNA_P-wetherbeei_contig1632.4.1 vs. uniprot
Match: A0A6H5K330_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K330_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 3.040e-20
Identity = 54/74 (72.97%), Postives = 67/74 (90.54%), Query Frame = 3 
Query:  534 AKYADVYNKHGRIGIYNRAEREAILERFRHKRRRRVFRKKIRYSCRKNLADKRLRIKGRFVRMSAEQRAALELE 755
            ++YAD+YNK+GRIGIY R EREAI+ RF+ KR RRV++KKIRY+CRKNLADKRLR+KGRFV+MS EQR AL+L+
Sbjct:  509 SEYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRTALKLK 582
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BLAST of mRNA_P-wetherbeei_contig1632.4.1 vs. uniprot
Match: A0A6U6FD34_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6FD34_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.170e-19
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 3 
Query:  519 LPHLLAKYADVYNKHGRIGIYNRAEREAILERFRHKRRRRVFRKKIRYSCRKNLADKRLRIKGRFVRMSAEQRAALELEL 758
            LPH LAKY  VYNK+GRIGIY  AER AI+ +F  KR RRV+ KKIRY+CRKNLAD+R+R+KGRFV+ S EQ A L+ +L
Sbjct:  309 LPHSLAKYKQVYNKNGRIGIYTPAERAAIIAKFNSKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAQLKAQL 388
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BLAST of mRNA_P-wetherbeei_contig1632.4.1 vs. uniprot
Match: A0A6S9FZK2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9FZK2_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.330e-19
Identity = 50/79 (63.29%), Postives = 64/79 (81.01%), Query Frame = 3 
Query:  519 LPHLLAKYADVYNKHGRIGIYNRAEREAILERFRHKRRRRVFRKKIRYSCRKNLADKRLRIKGRFVRMSAEQRAALELE 755
            LPH L+KY ++YNK+GRIG+Y  AER AI+ +F  KR RRV+ KKIRY+CRKNLAD+R+R+KGRFV+ S EQ AAL  +
Sbjct:  281 LPHSLSKYKEIYNKNGRIGVYTPAERAAIIAKFNGKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAALAAQ 359
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1632.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z588_9STRA1.200e-2470.93CCT domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835ZBX8_9STRA1.000e-2367.37CCT domain-containing protein n=1 Tax=Tribonema mi... [more]
K8YW04_NANGC2.730e-2272.60CCT domain-containing protein (Fragment) n=2 Tax=N... [more]
A0A4D9CLM4_9STRA9.410e-2272.60Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
D8LD77_ECTSI3.320e-2175.34CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S1Z2T2_TRICV1.270e-2065.00Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2YJJ2_9STRA1.480e-2062.50Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A6H5K330_9PHAE3.040e-2072.97CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6U6FD34_9STRA1.170e-1966.25Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6S9FZK2_9STRA4.330e-1963.29Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1632contigP-wetherbeei_contig1632:4568..6862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LD77
PFAMsCCT
Model size2295
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.87e-23
EggNOG OGs2E1UC@1|root,2S94C@2759|Eukaryota
DescriptionCCT motif
Cds size1020
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186083.3608725-UTR-P-wetherbeei_contig1632:4567..46411683186083.3608725-UTR-P-wetherbeei_contig1632:4567..4641Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1632 4568..4641 +
1683186083.382335-UTR-P-wetherbeei_contig1632:5661..68621683186083.382335-UTR-P-wetherbeei_contig1632:5661..6862Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1632 5662..6862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186083.374622-CDS-P-wetherbeei_contig1632:4641..56611683186083.374622-CDS-P-wetherbeei_contig1632:4641..5661Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1632 4642..5661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1632.4.1prot_P-wetherbeei_contig1632.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1632 4642..5661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1632.4.1

>prot_P-wetherbeei_contig1632.4.1 ID=prot_P-wetherbeei_contig1632.4.1|Name=mRNA_P-wetherbeei_contig1632.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=340bp
MELHGWGGGASSLAAARSVPFCVDSPLSAGGGVFGPIREEDEEDARALRS
LRASFVKPELSESGGGGGGFVGRTRSGSDVGVRGGSDRPSLDAGSGGYPR
ACFWAAAAAAPAGHRFSGDAGASSSGFSDRASSGGLNGGDASGVDCGVLP
HLLAKYADVYNKHGRIGIYNRAEREAILERFRHKRRRRVFRKKIRYSCRK
NLADKRLRIKGRFVRMSAEQRAALELELAGGGGGVAGVGASGTGEGGGVA
APGSGGEMAGGGGRVQRRGRGVSLGSEGDRGYGDDEAGYGGGYCGYGDDD
GSDRTGQGDDADGEDGGDDIDAEEPPVPGVRVRRHSIAY*
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mRNA from alignment at P-wetherbeei_contig1632:4568..6862+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1632.4.1 ID=mRNA_P-wetherbeei_contig1632.4.1|Name=mRNA_P-wetherbeei_contig1632.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2295bp|location=Sequence derived from alignment at P-wetherbeei_contig1632:4568..6862+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCCGCGGTGGCGGCGACGGTGACGCGGTCGCAGACACGAAACCGACCG
CGGTCCATCTCGTGCCCCGAGGGGATGGAGCTGCACGGGTGGGGCGGTGG
CGCATCGTCGCTGGCGGCGGCACGCAGCGTCCCATTCTGCGTGGACAGCC
CTCTGTCGGCTGGCGGCGGCGTCTTCGGGCCGATCCGAGAGGAAGACGAG
GAGGACGCGCGGGCCCTGCGCAGTCTGCGCGCCAGCTTTGTCAAGCCCGA
GCTCTCCGAAAGCGGTGGCGGCGGCGGCGGGTTTGTTGGCCGCACCCGCA
GTGGCAGCGACGTCGGCGTCCGCGGCGGCAGCGACCGCCCCAGCTTGGAC
GCCGGCTCCGGCGGCTACCCGCGGGCCTGCTTTTGGGCCGCCGCCGCCGC
GGCGCCGGCCGGCCACCGCTTTAGTGGCGACGCCGGCGCCAGCAGCAGCG
GTTTCAGTGATCGAGCCAGCAGCGGCGGCTTGAACGGCGGAGATGCGTCG
GGGGTGGACTGCGGCGTGCTGCCGCACCTGCTGGCGAAGTACGCGGACGT
GTATAACAAGCACGGCCGCATCGGCATCTACAACCGGGCTGAACGCGAGG
CCATCCTCGAGCGCTTTCGTCATAAGCGCCGCCGCCGCGTCTTCCGCAAG
AAGATCCGCTACTCGTGCCGCAAAAACCTCGCCGATAAGCGCCTGCGGAT
AAAGGGCCGCTTTGTGCGCATGAGCGCCGAGCAGCGGGCCGCCCTCGAGC
TCGAACTCGCCGGCGGTGGCGGGGGTGTTGCTGGCGTCGGGGCTTCTGGT
ACCGGAGAGGGTGGCGGGGTGGCTGCGCCCGGCAGCGGCGGGGAGATGGC
AGGCGGCGGCGGCCGTGTGCAGCGGCGCGGACGGGGTGTCAGCCTGGGCA
GCGAGGGCGATCGCGGCTACGGCGATGACGAGGCGGGCTACGGCGGCGGC
TACTGTGGTTATGGCGATGACGACGGCTCGGACCGGACAGGCCAAGGTGA
CGACGCCGATGGGGAGGACGGCGGGGACGACATCGACGCCGAGGAGCCGC
CGGTGCCCGGCGTCCGCGTCCGCCGCCACTCTATCGCTTACTGAGCCCGC
GGGGTTGGTCAGTAAAGCTGCGGAACCATGGCACGTGCGGCTGCAGCCTC
TTGAGATAGGCCGGCGGCTGTCATGGCTTTCGCGGCGGCCGGCGTTGCAA
CGCCGGCCGCCGCCGGCCTGCCGCAGGGGCAGCGGATCGGCGGAGGCGGC
GGCGGCGTCATTGCGTGGCGCCGGTTTCCCGCGGCGGCAGCGCTGCCGGG
CGCTGCGGCGGGCCGGGCCCAGGATCAAATTCCGGCCGCCAGGAATCGAC
GAAGACGAAGAAACGGGAACAGATGTTGGGGGCTGCGTGTGTGTAACGGC
TGTATATAGAGAAGAAAAAAGCCGGCACGGGTGAACTTGGGGGGTGGGAT
GATAGGAGGATCGGGCGGGCAACCGTGGAAACAAGTGGGTTTTAATGCCC
CCGCCGGTCGGCCATCCTTTCCGTCAAAGGATCCGACCGGCGGCCGCAGC
GGCGGGCGGCATTCAGTCATCGGCCGGCGTTCGGCCTGAAGGCGCCGTTT
AGCAGCACAGTCCGCGTAATTTTTTTACATTGGGCGCTGGCTGCGGCAAA
GCGAAGTGGTGCTTCCCTTCTTGTGGACTGGCGCGGCGAGGCGAGGCGGA
GAACGCAGCAGCACCAGCAGTTCGTCATCGTCGTCAGCAATTGCCGTCGG
CAAGGAGCAGAACAAGCAACCGAGCACGAGCTCATGGATTTCAAGGAGAC
ACCTGTTCATCACCAATCACGGGCCCGCCTTTGCGGCAAAATTCGCCAGG
GGAGCTCCCTCTTTGGTGCCGCCGCGGCCGCCGTGAGCGCCGCTTGCGGC
GCTCAGTGACGGTGATGGAGACGGATTTGGGCGGGGGAGGCGACGAGGGA
CGACGGACGGACGGGTACCGGAGGTTGCCCGCCGCTGCCCGTCGCCGGTC
GTGCTGAGGGAAAGCTCCCGCAGCAGTATTGGCGGCGGCGGCGGAACGGG
ACGGCGGCACGCAGAGCCGCCCAACGGGGAGGTTGGGGGCAGACCAACCG
CCGGCGGTCACCGGACCCAGAGTCATGCACGGGCAGAAAGCAGGCGGGTT
TTCGGGGCTGGCGGACTTGGCGGGATGCAGAAAGACGGATCACGAGCGCC
TCTGGCTGGCACAACAATAGAAGAGAGACGGGGAAGGGAAAGAGGAATAG
CAGCACAGGAGGTCCCGGCGCCGGACGGGGAAGGGCGGGGGCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1632:4568..6862+

>mRNA_P-wetherbeei_contig1632.4.1 ID=mRNA_P-wetherbeei_contig1632.4.1|Name=mRNA_P-wetherbeei_contig1632.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1020bp|location=Sequence derived from alignment at P-wetherbeei_contig1632:4568..6862+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCTGCACGGGTGGGGCGGTGGCGCATCGTCGCTGGCGGCGGCACG
CAGCGTCCCATTCTGCGTGGACAGCCCTCTGTCGGCTGGCGGCGGCGTCT
TCGGGCCGATCCGAGAGGAAGACGAGGAGGACGCGCGGGCCCTGCGCAGT
CTGCGCGCCAGCTTTGTCAAGCCCGAGCTCTCCGAAAGCGGTGGCGGCGG
CGGCGGGTTTGTTGGCCGCACCCGCAGTGGCAGCGACGTCGGCGTCCGCG
GCGGCAGCGACCGCCCCAGCTTGGACGCCGGCTCCGGCGGCTACCCGCGG
GCCTGCTTTTGGGCCGCCGCCGCCGCGGCGCCGGCCGGCCACCGCTTTAG
TGGCGACGCCGGCGCCAGCAGCAGCGGTTTCAGTGATCGAGCCAGCAGCG
GCGGCTTGAACGGCGGAGATGCGTCGGGGGTGGACTGCGGCGTGCTGCCG
CACCTGCTGGCGAAGTACGCGGACGTGTATAACAAGCACGGCCGCATCGG
CATCTACAACCGGGCTGAACGCGAGGCCATCCTCGAGCGCTTTCGTCATA
AGCGCCGCCGCCGCGTCTTCCGCAAGAAGATCCGCTACTCGTGCCGCAAA
AACCTCGCCGATAAGCGCCTGCGGATAAAGGGCCGCTTTGTGCGCATGAG
CGCCGAGCAGCGGGCCGCCCTCGAGCTCGAACTCGCCGGCGGTGGCGGGG
GTGTTGCTGGCGTCGGGGCTTCTGGTACCGGAGAGGGTGGCGGGGTGGCT
GCGCCCGGCAGCGGCGGGGAGATGGCAGGCGGCGGCGGCCGTGTGCAGCG
GCGCGGACGGGGTGTCAGCCTGGGCAGCGAGGGCGATCGCGGCTACGGCG
ATGACGAGGCGGGCTACGGCGGCGGCTACTGTGGTTATGGCGATGACGAC
GGCTCGGACCGGACAGGCCAAGGTGACGACGCCGATGGGGAGGACGGCGG
GGACGACATCGACGCCGAGGAGCCGCCGGTGCCCGGCGTCCGCGTCCGCC
GCCACTCTATCGCTTACTGA
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