mRNA_P-wetherbeei_contig16308.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16308.1.1
Unique NamemRNA_P-wetherbeei_contig16308.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16308.1.1 vs. uniprot
Match: A0A7X8Y0D1_9BURK (Glutamate racemase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8Y0D1_9BURK)

HSP 1 Score: 192 bits (488), Expect = 2.440e-58
Identity = 101/166 (60.84%), Postives = 119/166 (71.69%), Query Frame = 1
Query:   22 MALGRIGVFDSGVGGLTIAGRLMEEAPHLGIHYFGDTAHVPYGGRPPEEVAMLVEQIVEYLVESGCSAVVMACNTSNAVALDRVKSWCPVPVVGIIEPAARAAMAATRNGRIGVIANPITASSGAYERACAPTLQSMYGPSRNVSVYPVGCPKLVPLIEQGLVHSP 519
            M  G IG+FDSGVGGLT+A R+ +E P     YFGDTAHVPYG R  EEV  LV  I  +LV SG   +VMACNTS+A+ALD V++W PVPV+GIIE A+RAA+ ATRNG +GVIANP+TA SGAYE ACA         +  V V PVGCP+LVPL+E G V SP
Sbjct:    1 MRPGLIGIFDSGVGGLTVADRVRQELPGAPFLYFGDTAHVPYGNRSAEEVRHLVSAIARHLVASGAQVLVMACNTSSALALDLVRAWSPVPVIGIIEAASRAAVQATRNGVVGVIANPLTAGSGAYEEACARASSEAGERAGGVRVLPVGCPRLVPLVEAGEVRSP 166          
BLAST of mRNA_P-wetherbeei_contig16308.1.1 vs. uniprot
Match: A0A355TRC3_9BACT (Glutamate racemase n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TRC3_9BACT)

HSP 1 Score: 181 bits (459), Expect = 6.000e-54
Identity = 94/165 (56.97%), Postives = 120/165 (72.73%), Query Frame = 1
Query:   37 IGVFDSGVGGLTIAGRLMEEAPHLGIHYFGDTAHVPYGGRPPEEVAMLVEQIVEYLVESGCSAVVMACNTSNAVALDRVKSWCPVPVVGIIEPAARAAMAATRNGRIGVIANPITASSGAYERACAPT--LQSMYGPS--RNVSVYPVGCPKLVPLIEQGLVHSP 519
            IGVFDSGVGGLT+A ++  E P +   +FGDT HVPYG R   EV  L++ I  +L+ SG   +VMACNTS+A+A D V +W P P++GII+ AA+AA+ ATRNGRIG++ANP+TA+SGAYE+ACA      S+ G +    V V PVGCPKLVPLIE+GLV  P
Sbjct:    7 IGVFDSGVGGLTVAEQIDRELPGVPFIFFGDTQHVPYGNRSVSEVVSLIDAICHHLISSGAEVLVMACNTSSALAFDHVAAWSPAPIIGIIDEAAKAAVRATRNGRIGLMANPLTAASGAYEKACAQAHASASLKGETVASTVKVTPVGCPKLVPLIEKGLVSGP 171          
BLAST of mRNA_P-wetherbeei_contig16308.1.1 vs. uniprot
Match: A0A101EC24_9THEO (Glutamate racemase n=2 Tax=Clostridia TaxID=186801 RepID=A0A101EC24_9THEO)

HSP 1 Score: 152 bits (384), Expect = 9.390e-43
Identity = 82/161 (50.93%), Postives = 109/161 (67.70%), Query Frame = 1
Query:   37 IGVFDSGVGGLTIAGRLMEEAPHLGIHYFGDTAHVPYGGRPPEEVAMLVEQIVEYLVESGCSAVVMACNTSNAVALDRVKSWCPVPVVGIIEPAARAAMAATRNGRIGVIANPITASSGAYERACAPTLQSMYGPSRNVSVYPVGCPKLVPLIEQGLVHSP 519
            +GVFDSGVGGLTIA  ++ + P   I Y+GDTAHVPYG +  +E+    + IV YLVE G  A+V ACNT++AVAL+ ++S   VP++G+IEP  R A+A TRNGRIGV+A   T +SG + R     LQS+      + VYP  CP+LVPL+E G+V  P
Sbjct:    7 VGVFDSGVGGLTIAREIVRQLPAETILYYGDTAHVPYGSKRVDELIRYADAIVAYLVEQGVKAIVDACNTTSAVALNYLQSKYSVPIIGVIEPGVRDALAVTRNGRIGVLATEATIASGLHARL----LQSL---EPRLKVYPQACPRLVPLVEAGIVDGP 160          
BLAST of mRNA_P-wetherbeei_contig16308.1.1 vs. uniprot
Match: D7CIS5_SYNLT (Glutamate racemase n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) TaxID=643648 RepID=D7CIS5_SYNLT)

HSP 1 Score: 152 bits (383), Expect = 1.470e-42
Identity = 76/160 (47.50%), Postives = 106/160 (66.25%), Query Frame = 1
Query:   37 IGVFDSGVGGLTIAGRLMEEAPHLGIHYFGDTAHVPYGGRPPEEVAMLVEQIVEYLVESGCSAVVMACNTSNAVALDRVKSWCPVPVVGIIEPAARAAMAATRNGRIGVIANPITASSGAYERACAPTLQSMYGPSRNVSVYPVGCPKLVPLIEQGLVHS 516
            +GVFDSGVGGLT+   +++  P   I Y GDTA+VPYGG+PP+E+  L + I+++L+  G  AVV ACNTS++V++  ++  CPVPV+ +I P A  A A TRNGR+GVIA   T  +GAY R        +   S  +SVY V CP+ VPL+EQG++  
Sbjct:    7 VGVFDSGVGGLTVVKEIIKRLPCENIIYIGDTANVPYGGKPPQELIRLGKNIIDFLINQGAKAVVAACNTSSSVSIPILRDMCPVPVIDVIVPGAANAAAVTRNGRVGVIATEATVKTGAYTR-------HIKALSPGISVYEVACPRFVPLVEQGVLEG 159          
BLAST of mRNA_P-wetherbeei_contig16308.1.1 vs. uniprot
Match: A0A829ZQV6_9THEO (Glutamate racemase n=1 Tax=Thermanaeromonas sp. C210 TaxID=2731925 RepID=A0A829ZQV6_9THEO)

HSP 1 Score: 151 bits (382), Expect = 1.870e-42
Identity = 80/161 (49.69%), Postives = 107/161 (66.46%), Query Frame = 1
Query:   37 IGVFDSGVGGLTIAGRLMEEAPHLGIHYFGDTAHVPYGGRPPEEVAMLVEQIVEYLVESGCSAVVMACNTSNAVALDRVKSWCPVPVVGIIEPAARAAMAATRNGRIGVIANPITASSGAYERACAPTLQSMYGPSRNVSVYPVGCPKLVPLIEQGLVHSP 519
            +GVFDSGVGGLT+   ++ + P   I Y+GDTAHVPYG +  EE+    + IV YLVE G  A+V ACNT++A+ALD +K+   VP++G+IEP  R A+A TR+GRIGV+A   T +SG + R     LQS+      + VYP  CP+LVPL+E G V  P
Sbjct:    7 VGVFDSGVGGLTVVREIVRQLPAETIIYYGDTAHVPYGSKKVEELIAYADAIVSYLVEQGVKAIVDACNTTSAIALDYLKNKYSVPIIGVIEPGVREALAVTRSGRIGVLATEATIASGIHARL----LQSL---EPRLKVYPQACPRLVPLVEAGRVEGP 160          
BLAST of mRNA_P-wetherbeei_contig16308.1.1 vs. uniprot
Match: A0A7V6ZV27_9FIRM (Glutamate racemase n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=A0A7V6ZV27_9FIRM)

HSP 1 Score: 149 bits (376), Expect = 1.530e-41
Identity = 77/162 (47.53%), Postives = 104/162 (64.20%), Query Frame = 1
Query:   37 IGVFDSGVGGLTIAGRLMEEAPHLGIHYFGDTAHVPYGGRPPEEVAMLVEQIVEYLVESGCSAVVMACNTSNAVALDRVKSWCPVPVVGIIEPAARAAMAATRNGRIGVIANPITASSGAYERACAPTLQSMYGPSR-NVSVYPVGCPKLVPLIEQGLVHSP 519
            +GVFDSGVGGLT+   ++ + PH  + YFGDTAHVPYG R PEE+     +I EYLV  GC  +++ACNTS ++A + +K   PVP++G+IEPA   A++ T+N  IGV+A   T +S +Y        Q+M    R  V VYP  CP  VPLIE+G+V  P
Sbjct:    9 LGVFDSGVGGLTVVKEILRQLPHESVFYFGDTAHVPYGSRSPEELQGFAFKITEYLVAQGCKMIIIACNTSTSLAYELLKEKFPVPMIGVIEPAVDKALSMTQNNCIGVLATEATINSQSY--------QTMLRSKRPRVEVYPQACPAFVPLIEKGIVDGP 162          
BLAST of mRNA_P-wetherbeei_contig16308.1.1 vs. uniprot
Match: UPI00168475C0 (glutamate racemase n=2 Tax=unclassified Microcoleus TaxID=2642155 RepID=UPI00168475C0)

HSP 1 Score: 149 bits (377), Expect = 1.950e-41
Identity = 85/173 (49.13%), Postives = 112/173 (64.74%), Query Frame = 1
Query:    1 PSFLGGKMALGRIGVFDSGVGGLTIAGRLMEEAPHLGIHYFGDTAHVPYGGRPPEEVAMLVEQIVEYLVESGCSAVVMACNTSNAVALDRVKSWCPVPVVGIIEPAARAAMAATRNGRIGVIANPITASSGAYERACAPTLQSMYGPSRNVSVYPVGCPKLVPLIEQGLVHSP 519
            PS   G+    RIG+FDSGVGGLT+   L  + PH  I YFGDTA +PYG R   E+   V +I+ ++V+ G   V+MACNTS+A+AL+ V+S  P+P++G+I P ARAA+   R  RIGVIA P TA+S AY RA    +  M   +R   V+ VGCP+ VPLIEQG +  P
Sbjct:   12 PSSFTGEPQRDRIGIFDSGVGGLTVLRELYRQLPHESILYFGDTARLPYGTRSQAEILQFVREILTWMVQQGVKMVIMACNTSSALALEAVRSEFPLPILGVILPGARAAVQQGR--RIGVIATPATAASNAYRRA----ILEMDAEAR---VWQVGCPEFVPLIEQGRIDEP 175          
BLAST of mRNA_P-wetherbeei_contig16308.1.1 vs. uniprot
Match: A0A3A6MR21_9FIRM (Glutamate racemase n=1 Tax=Candidatus Desulforudis sp. TaxID=2093368 RepID=A0A3A6MR21_9FIRM)

HSP 1 Score: 147 bits (370), Expect = 1.220e-40
Identity = 77/161 (47.83%), Postives = 111/161 (68.94%), Query Frame = 1
Query:   37 IGVFDSGVGGLTIAGRLMEEAPHLGIHYFGDTAHVPYGGRPPEEVAMLVEQIVEYLVESGCSAVVMACNTSNAVALDRVKSWCPVPVVGIIEPAARAAMAATRNGRIGVIANPITASSGAYERACAPTLQSMYGPSRNVSVYPVGCPKLVPLIEQGLVHSP 519
            +G+FDSGVGGLT+AGR+ E+ P L I YFGDTAHVPYG R PEE+    + I+ +L   G   ++ ACNTS++++L+ +++   +P++G+I P A+AA+ ATR+GR+G+IA   T  SGAYERA    ++S+   S    VY V  P+LVPL+E G +  P
Sbjct:    6 VGLFDSGVGGLTVAGRVFEKLPGLPILYFGDTAHVPYGNRSPEELVRYADGIISFLTGQGARYIIFACNTSSSLSLEIMRTRHALPMMGLIVPGAKAAVDATRSGRVGIIATQGTVKSGAYERA----IRSL---SPGTVVYSVPAPRLVPLVEAGQMDGP 159          
BLAST of mRNA_P-wetherbeei_contig16308.1.1 vs. uniprot
Match: A0A2T0AWA6_9THEO (Glutamate racemase n=1 Tax=Moorella humiferrea TaxID=676965 RepID=A0A2T0AWA6_9THEO)

HSP 1 Score: 146 bits (368), Expect = 2.420e-40
Identity = 79/161 (49.07%), Postives = 104/161 (64.60%), Query Frame = 1
Query:   37 IGVFDSGVGGLTIAGRLMEEAPHLGIHYFGDTAHVPYGGRPPEEVAMLVEQIVEYLVESGCSAVVMACNTSNAVALDRVKSWCPVPVVGIIEPAARAAMAATRNGRIGVIANPITASSGAYERACAPTLQSMYGPSRNVSVYPVGCPKLVPLIEQGLVHSP 519
            +GVFDSGVGGLT+A  +  + P   I Y+GDTAHVPYG R  EE+    + I  +LVE G  A+V ACNT++AVAL  +K    VP++G+IEP  + A+ ATRNGRIGVIA   T +S A+E+A       +   + +V V+   CPKLVPL+E G V  P
Sbjct:    7 VGVFDSGVGGLTVALEISRQLPAETIVYYGDTAHVPYGSRTVEELIFFADTITRFLVEQGAKAIVDACNTTSAVALPYLKQKYDVPIIGVIEPGVKEALKATRNGRIGVIATEATIASRAHEKA-------VQAHAADVQVFGRACPKLVPLVEAGKVSGP 160          
BLAST of mRNA_P-wetherbeei_contig16308.1.1 vs. uniprot
Match: UPI0019B2FB79 (Glutamate racemase n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=UPI0019B2FB79)

HSP 1 Score: 145 bits (367), Expect = 3.170e-40
Identity = 77/161 (47.83%), Postives = 102/161 (63.35%), Query Frame = 1
Query:   37 IGVFDSGVGGLTIAGRLMEEAPHLGIHYFGDTAHVPYGGRPPEEVAMLVEQIVEYLVESGCSAVVMACNTSNAVALDRVKSWCPVPVVGIIEPAARAAMAATRNGRIGVIANPITASSGAYERACAPTLQSMYGPSRNVSVYPVGCPKLVPLIEQGLVHSP 519
            IGVFDSG+GGLT+   +M   PH  + Y GDTA VPYG + PE V     QI  +L+E    A+V+ACNT+ A AL+ ++  CPVPV+G+++P ARAA+ ATRN RIGVI    T +SGAY RA A         + + +V+   CP  VPL+E+G V  P
Sbjct:    6 IGVFDSGIGGLTVVAAIMHALPHERVVYVGDTARVPYGPKSPETVVRYSRQIATWLLEQQVKAIVIACNTATAHALELLQRECPVPVIGVVQPGARAAVRATRNARIGVIGTSGTINSGAYHRAIASL-------APDATVFGAACPLFVPLVEEGWVDHP 159          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16308.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X8Y0D1_9BURK2.440e-5860.84Glutamate racemase n=1 Tax=Burkholderiales bacteri... [more]
A0A355TRC3_9BACT6.000e-5456.97Glutamate racemase n=1 Tax=bacterium UBP9_UBA11836... [more]
A0A101EC24_9THEO9.390e-4350.93Glutamate racemase n=2 Tax=Clostridia TaxID=186801... [more]
D7CIS5_SYNLT1.470e-4247.50Glutamate racemase n=1 Tax=Syntrophothermus lipoca... [more]
A0A829ZQV6_9THEO1.870e-4249.69Glutamate racemase n=1 Tax=Thermanaeromonas sp. C2... [more]
A0A7V6ZV27_9FIRM1.530e-4147.53Glutamate racemase n=1 Tax=Clostridia bacterium Ta... [more]
UPI00168475C01.950e-4149.13glutamate racemase n=2 Tax=unclassified Microcoleu... [more]
A0A3A6MR21_9FIRM1.220e-4047.83Glutamate racemase n=1 Tax=Candidatus Desulforudis... [more]
A0A2T0AWA6_9THEO2.420e-4049.07Glutamate racemase n=1 Tax=Moorella humiferrea Tax... [more]
UPI0019B2FB793.170e-4047.83Glutamate racemase n=1 Tax=Gemmatimonadaceae bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16308contigP-wetherbeei_contig16308:2..520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog643648.Slip_2056
Preferred namemurI
PFAMsAsp_Glu_race
Model size519
Max annot lvl186801|Clostridia
KEGG rclassRC00302
KEGG koko:K01776
KEGG ReactionR00260
KEGG Pathwayko00471,ko01100,map00471,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.33e-43
EggNOG OGsCOG0796@1|root,COG0796@2|Bacteria,1TPPR@1239|Firmicutes,249MB@186801|Clostridia,42K38@68298|Syntrophomonadaceae
EC5.1.1.3
DescriptionProvides the (R)-glutamate required for cell wall biosynthesis
Cds size498
COG categoryM
BRITEko00000,ko00001,ko01000,ko01011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186082.8076956-CDS-P-wetherbeei_contig16308:1..4991683186082.8076956-CDS-P-wetherbeei_contig16308:1..499Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16308 2..499 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186082.819854-UTR-P-wetherbeei_contig16308:499..5201683186082.819854-UTR-P-wetherbeei_contig16308:499..520Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16308 500..520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16308.1.1prot_P-wetherbeei_contig16308.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16308 2..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16308.1.1

>prot_P-wetherbeei_contig16308.1.1 ID=prot_P-wetherbeei_contig16308.1.1|Name=mRNA_P-wetherbeei_contig16308.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
MALGRIGVFDSGVGGLTIAGRLMEEAPHLGIHYFGDTAHVPYGGRPPEEV
AMLVEQIVEYLVESGCSAVVMACNTSNAVALDRVKSWCPVPVVGIIEPAA
RAAMAATRNGRIGVIANPITASSGAYERACAPTLQSMYGPSRNVSVYPVG
CPKLVPLIEQGLVHSP
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mRNA from alignment at P-wetherbeei_contig16308:2..520-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16308.1.1 ID=mRNA_P-wetherbeei_contig16308.1.1|Name=mRNA_P-wetherbeei_contig16308.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig16308:2..520- (Phaeothamnion wetherbeei SAG_119_79)
CCGAGTTTTTTGGGAGGTAAGATGGCTTTAGGGCGAATCGGCGTATTCGA CTCCGGAGTTGGTGGTCTGACGATTGCGGGGAGACTCATGGAAGAGGCTC CTCATCTGGGAATTCACTATTTTGGCGACACGGCTCACGTGCCGTATGGC GGACGTCCGCCGGAAGAAGTCGCGATGCTCGTCGAGCAGATCGTCGAATA TCTCGTGGAGAGCGGATGCAGCGCTGTTGTTATGGCCTGCAATACCTCCA ACGCAGTGGCTCTCGATCGCGTAAAAAGCTGGTGTCCGGTTCCCGTGGTG GGCATCATTGAACCCGCCGCTCGGGCCGCGATGGCCGCTACGCGCAACGG CCGCATCGGCGTCATCGCCAATCCCATCACGGCTTCCAGCGGCGCCTACG AACGTGCCTGCGCTCCCACGCTGCAATCGATGTATGGCCCGAGTCGCAAC GTCTCGGTCTATCCCGTCGGCTGTCCCAAGCTTGTTCCCCTCATCGAGCA GGGCCTCGTGCACTCGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16308:2..520-

>mRNA_P-wetherbeei_contig16308.1.1 ID=mRNA_P-wetherbeei_contig16308.1.1|Name=mRNA_P-wetherbeei_contig16308.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig16308:2..520- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTTTAGGGCGAATCGGCGTATTCGACTCCGGAGTTGGTGGTCTGAC
GATTGCGGGGAGACTCATGGAAGAGGCTCCTCATCTGGGAATTCACTATT
TTGGCGACACGGCTCACGTGCCGTATGGCGGACGTCCGCCGGAAGAAGTC
GCGATGCTCGTCGAGCAGATCGTCGAATATCTCGTGGAGAGCGGATGCAG
CGCTGTTGTTATGGCCTGCAATACCTCCAACGCAGTGGCTCTCGATCGCG
TAAAAAGCTGGTGTCCGGTTCCCGTGGTGGGCATCATTGAACCCGCCGCT
CGGGCCGCGATGGCCGCTACGCGCAACGGCCGCATCGGCGTCATCGCCAA
TCCCATCACGGCTTCCAGCGGCGCCTACGAACGTGCCTGCGCTCCCACGC
TGCAATCGATGTATGGCCCGAGTCGCAACGTCTCGGTCTATCCCGTCGGC
TGTCCCAAGCTTGTTCCCCTCATCGAGCAGGGCCTCGTGCACTCGCCC
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