mRNA_P-wetherbeei_contig16302.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16302.1.1
Unique NamemRNA_P-wetherbeei_contig16302.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16302.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16302contigP-wetherbeei_contig16302:237..1304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size688
Hectar predicted targeting categoryother localisation
Exons2
Cds size687
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186082.678525-CDS-P-wetherbeei_contig16302:236..5741683186082.678525-CDS-P-wetherbeei_contig16302:236..574Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16302 237..574 -
1683186082.6903532-CDS-P-wetherbeei_contig16302:955..13041683186082.6903532-CDS-P-wetherbeei_contig16302:955..1304Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16302 956..1304 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16302.1.1prot_P-wetherbeei_contig16302.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16302 237..1304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16302.1.1

>prot_P-wetherbeei_contig16302.1.1 ID=prot_P-wetherbeei_contig16302.1.1|Name=mRNA_P-wetherbeei_contig16302.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=229bp
EAARADALRRVTWMPLEPPDDCSGGGCAAAEPAQLRPQEGHGAALLHGGR
YVAIIGAWSAFDEIINDVVVVDARRLPKELVWSTARDVGMPPEPSTYGLG
VCAVADDTLAVFGGLLYGGYKGEVNWLYLCRVVPLPAGAAPMDGPDIFHS
GRETVSNAGAFVADWAIPSTAGVVPTGRGYHSFTACPPGAPAASSTAGSA
AAGGTAIGGAAGGAAAATGAARPASVAGG
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mRNA from alignment at P-wetherbeei_contig16302:237..1304-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16302.1.1 ID=mRNA_P-wetherbeei_contig16302.1.1|Name=mRNA_P-wetherbeei_contig16302.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1068bp|location=Sequence derived from alignment at P-wetherbeei_contig16302:237..1304- (Phaeothamnion wetherbeei SAG_119_79)
GAGGCCGCCCGCGCCGACGCGCTGCGGCGCGTGACGTGGATGCCGCTAGA
ACCGCCAGACGACTGCAGCGGTGGCGGCTGCGCGGCGGCGGAGCCGGCGC
AGCTGCGCCCCCAGGAGGGCCACGGCGCTGCCTTGCTCCACGGCGGCCGC
TATGTCGCCATCATCGGCGCTTGGAGCGCCTTCGACGAGATTATCAACGA
CGTCGTTGTCGTGGACGCGCGCCGGCTGCCGAAGGAGCTGGTCTGGTCGA
CGGCGCGTGACGTCGGCATGCCGCCCGAACCGTCGACGTACGGTCTTGGA
GTCTGCGCCGTCGCTGACGACACGCTGGCGGTGTTCGGCGGCCTCCTGTG
TGAGTTTTTCCCGGACGTCTCGTAGTGCGCTTGAATGAGGAATTTGCTTT
CTTTGGCGGGCGGAAATCACGTAATGGAGTAGGGCCGTCCGTGTCTTGGG
CCTGGTCTGATAATGCTCCTCTTTCTGCGATTGGAAGATGTTCTGATTCT
GACTGCATAACTCGTCCATTTCCTCGCTTTGAGCTGTGTGACGAGGGCGG
AAGAAAATTGTTTTCCAAGCGCTCTGCCAAGAGTTGCCGGTTCTCAACGC
ATTTCCGACCTGGATTCCTACTTTGGCGCCCGGTCCGGACGTTTTCTTAT
ACCAGCTCTCCAAACTCACAAATCCAATTCCCCCGCCTCCGCTGACTTAC
GTGACCGATCGCCGTTGACACACGTAACAGACGGCGGTTACAAGGGCGAG
GTGAACTGGCTGTACCTCTGCCGCGTCGTGCCGCTGCCGGCCGGGGCCGC
CCCGATGGACGGCCCCGACATCTTCCATTCTGGCCGGGAGACAGTCAGCA
ACGCCGGCGCCTTCGTCGCGGACTGGGCCATCCCCAGCACCGCCGGCGTC
GTGCCCACGGGCCGGGGCTACCACTCCTTTACTGCATGCCCGCCGGGCGC
CCCCGCAGCCAGTAGCACTGCCGGTTCTGCCGCCGCTGGCGGAACCGCCA
TCGGTGGCGCCGCCGGCGGCGCCGCTGCCGCCACCGGTGCGGCCAGGCCT
GCGAGTGTGGCTGGCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16302:237..1304-

>mRNA_P-wetherbeei_contig16302.1.1 ID=mRNA_P-wetherbeei_contig16302.1.1|Name=mRNA_P-wetherbeei_contig16302.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=687bp|location=Sequence derived from alignment at P-wetherbeei_contig16302:237..1304- (Phaeothamnion wetherbeei SAG_119_79)
GAGGCCGCCCGCGCCGACGCGCTGCGGCGCGTGACGTGGATGCCGCTAGA
ACCGCCAGACGACTGCAGCGGTGGCGGCTGCGCGGCGGCGGAGCCGGCGC
AGCTGCGCCCCCAGGAGGGCCACGGCGCTGCCTTGCTCCACGGCGGCCGC
TATGTCGCCATCATCGGCGCTTGGAGCGCCTTCGACGAGATTATCAACGA
CGTCGTTGTCGTGGACGCGCGCCGGCTGCCGAAGGAGCTGGTCTGGTCGA
CGGCGCGTGACGTCGGCATGCCGCCCGAACCGTCGACGTACGGTCTTGGA
GTCTGCGCCGTCGCTGACGACACGCTGGCGGTGTTCGGCGGCCTCCTGTA
CGGCGGTTACAAGGGCGAGGTGAACTGGCTGTACCTCTGCCGCGTCGTGC
CGCTGCCGGCCGGGGCCGCCCCGATGGACGGCCCCGACATCTTCCATTCT
GGCCGGGAGACAGTCAGCAACGCCGGCGCCTTCGTCGCGGACTGGGCCAT
CCCCAGCACCGCCGGCGTCGTGCCCACGGGCCGGGGCTACCACTCCTTTA
CTGCATGCCCGCCGGGCGCCCCCGCAGCCAGTAGCACTGCCGGTTCTGCC
GCCGCTGGCGGAACCGCCATCGGTGGCGCCGCCGGCGGCGCCGCTGCCGC
CACCGGTGCGGCCAGGCCTGCGAGTGTGGCTGGCGGG
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