mRNA_P-wetherbeei_contig163.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig163.4.1
Unique NamemRNA_P-wetherbeei_contig163.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig163.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig163contigP-wetherbeei_contig163:3042..4018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size978
Hectar predicted targeting categoryother localisation
Exons1
Cds size519
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186082.4694076-UTR-P-wetherbeei_contig163:3041..34991683186082.4694076-UTR-P-wetherbeei_contig163:3041..3499Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig163 3042..3499 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186082.479565-CDS-P-wetherbeei_contig163:3499..40181683186082.479565-CDS-P-wetherbeei_contig163:3499..4018Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig163 3500..4018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig163.4.1prot_P-wetherbeei_contig163.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig163 3500..4018 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig163.4.1

>prot_P-wetherbeei_contig163.4.1 ID=prot_P-wetherbeei_contig163.4.1|Name=mRNA_P-wetherbeei_contig163.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
LAAEKAEEKARLAAEKAEEKVKLAEEKARLAAEKAEEKARLAAEEKASLK
LDYEIRLIKTEMSREALLAAANSKYLALTRSRNICGAVELWAQMYRLGLK
KKGEKSPPPGVSLEFHRVFLSLDSGLFVAATLMICRGLQNPSPTPSFARP
SSCSLKAPLGMRARIAHSSGTS*
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mRNA from alignment at P-wetherbeei_contig163:3042..4018-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig163.4.1 ID=mRNA_P-wetherbeei_contig163.4.1|Name=mRNA_P-wetherbeei_contig163.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=977bp|location=Sequence derived from alignment at P-wetherbeei_contig163:3042..4018- (Phaeothamnion wetherbeei SAG_119_79)
CTCGCGGCCGAGAAGGCCGAAGAGAAGGCGAGGCTCGCGGCCGAGAAGGC
CGAAGAGAAGGTGAAGCTCGCCGAAGAGAAGGCGAGGCTCGCGGCCGAGA
AGGCCGAAGAGAAGGCGAGGCTCGCGGCCGAAGAGAAGGCTTCTTTGAAG
CTGGACTACGAAATTCGACTCATTAAGACCGAGATGAGCCGCGAGGCTCT
CCTTGCTGCGGCCAACAGCAAATATCTGGCGCTAACACGCAGTCGAAATA
TTTGCGGCGCCGTCGAGCTCTGGGCGCAGATGTATCGATTAGGGCTCAAG
AAGAAAGGGGAGAAGAGCCCACCTCCTGGGGTGAGTTTGGAGTTTCATCG
TGTTTTTCTTTCACTGGATTCTGGTTTGTTTGTTGCGGCAACGCTCATGA
TATGCCGAGGGCTGCAAAACCCCTCCCCCACCCCTTCCTTCGCCCGCCCG
TCATCTTGCAGCCTCAAGGCGCCCTTAGGCATGCGCGCGAGAATAGCGCA
TTCTTCCGGAACGTCCTAGCCGCGATCGCGAAGAGCCAGAATGTCGACGC
CAAGCACCTCGACCAATGCTTTGATGGTCTCTACCATTCACTATCCAAGA
CACACCATGGCTCAGAGGACGTCGTCCAGCTTCGTTTCGACGAGATCACG
GCGCCCGGCGAGCGCGTGGTGCTTGCCGCCATCTTTGCTGTTGCACATAT
ACCGTATGTTGTGGTGCCGGAGGGTGGCCTGGAGGGGTTAGAGGGCTCAC
AGTCCCCGCTCTATGTGGACCTGCATAGCGCAGAGCTGGTGCCCCACGAC
GGGAAGGATCTGACGCTGGAACACCCATGGCTCTGACGTTGACGGAGGTA
AATTTTGCTGTTCATTCATGAAGTCTTGTGGACTAGCAGCTACTCTCACC
ACCGCAATTCATTTAGCTTTTCGCCCGTTTGATCTTTCATTGCTTTGTTT
CTCGCCTTCTTGCCCCATTTTTATGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig163:3042..4018-

>mRNA_P-wetherbeei_contig163.4.1 ID=mRNA_P-wetherbeei_contig163.4.1|Name=mRNA_P-wetherbeei_contig163.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig163:3042..4018- (Phaeothamnion wetherbeei SAG_119_79)
CTCGCGGCCGAGAAGGCCGAAGAGAAGGCGAGGCTCGCGGCCGAGAAGGC
CGAAGAGAAGGTGAAGCTCGCCGAAGAGAAGGCGAGGCTCGCGGCCGAGA
AGGCCGAAGAGAAGGCGAGGCTCGCGGCCGAAGAGAAGGCTTCTTTGAAG
CTGGACTACGAAATTCGACTCATTAAGACCGAGATGAGCCGCGAGGCTCT
CCTTGCTGCGGCCAACAGCAAATATCTGGCGCTAACACGCAGTCGAAATA
TTTGCGGCGCCGTCGAGCTCTGGGCGCAGATGTATCGATTAGGGCTCAAG
AAGAAAGGGGAGAAGAGCCCACCTCCTGGGGTGAGTTTGGAGTTTCATCG
TGTTTTTCTTTCACTGGATTCTGGTTTGTTTGTTGCGGCAACGCTCATGA
TATGCCGAGGGCTGCAAAACCCCTCCCCCACCCCTTCCTTCGCCCGCCCG
TCATCTTGCAGCCTCAAGGCGCCCTTAGGCATGCGCGCGAGAATAGCGCA
TTCTTCCGGAACGTCCTAG
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