mRNA_P-wetherbeei_contig16285.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16285.2.1
Unique NamemRNA_P-wetherbeei_contig16285.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16285.2.1 vs. uniprot
Match: A0A847ZU82_9HYPH (Acyl carrier protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A847ZU82_9HYPH)

HSP 1 Score: 136 bits (342), Expect = 2.360e-40
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    7 MSDVAERVKKIVVEHLGVDGDKVKTEASFIDDLGADSLDTVELVMAFEEEFAIEIPDDAAETIQTVGDAVKFIEKA 234
            MSD+AERVKKIVVEHL VDGDKVK EASFIDDLGADSLDTVELVMAFEEEF IEIPDDAAETIQTVGDAVKFIEKA
Sbjct:    1 MSDIAERVKKIVVEHLSVDGDKVKAEASFIDDLGADSLDTVELVMAFEEEFGIEIPDDAAETIQTVGDAVKFIEKA 76
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BLAST of mRNA_P-wetherbeei_contig16285.2.1 vs. uniprot
Match: A0A6G6WZB7_9HYPH (Acyl carrier protein n=7 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6G6WZB7_9HYPH)

HSP 1 Score: 133 bits (334), Expect = 3.920e-39
Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 1 
Query:    7 MSDVAERVKKIVVEHLGVDGDKVKTEASFIDDLGADSLDTVELVMAFEEEFAIEIPDDAAETIQTVGDAVKFIEKAA 237
            MSDVAERVKKIVVEHLGVD +KV  EASFIDDLGADSLDTVELVMAFEEEF IEIPDDAAETIQTVGDAVKFIEK+A
Sbjct:    1 MSDVAERVKKIVVEHLGVDAEKVNPEASFIDDLGADSLDTVELVMAFEEEFGIEIPDDAAETIQTVGDAVKFIEKSA 77
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BLAST of mRNA_P-wetherbeei_contig16285.2.1 vs. uniprot
Match: A0A7S8C789_9HYPH (Acyl carrier protein n=2 Tax=Parvibaculaceae TaxID=2813035 RepID=A0A7S8C789_9HYPH)

HSP 1 Score: 129 bits (325), Expect = 9.260e-38
Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    7 MSDVAERVKKIVVEHLGVDGDKVKTEASFIDDLGADSLDTVELVMAFEEEFAIEIPDDAAETIQTVGDAVKFIEK 231
            MSD+AERVKKIVVEHLGV+ DKV  +ASFIDDLGADSLDTVELVMAFEEEF IEIPDDAAETIQTVGDAVKFIEK
Sbjct:    1 MSDIAERVKKIVVEHLGVEADKVSEDASFIDDLGADSLDTVELVMAFEEEFGIEIPDDAAETIQTVGDAVKFIEK 75
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BLAST of mRNA_P-wetherbeei_contig16285.2.1 vs. uniprot
Match: UPI0018C58B24 (acyl carrier protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI0018C58B24)

HSP 1 Score: 129 bits (323), Expect = 1.920e-37
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:    7 MSDVAERVKKIVVEHLGVDGDKVKTEASFIDDLGADSLDTVELVMAFEEEFAIEIPDDAAETIQTVGDAVKFIEKAA 237
            MSD A+RVK IVV+HLGV+ DKVK EASFIDDLGADSLDTVELVMAFEEEF IEIPDDAAETIQTVGDAVKFI+KAA
Sbjct:    1 MSDTADRVKNIVVKHLGVEADKVKPEASFIDDLGADSLDTVELVMAFEEEFGIEIPDDAAETIQTVGDAVKFIDKAA 77
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BLAST of mRNA_P-wetherbeei_contig16285.2.1 vs. uniprot
Match: A0A8J3DLU2_9HYPH (Acyl carrier protein n=1 Tax=Limoniibacter endophyticus TaxID=1565040 RepID=A0A8J3DLU2_9HYPH)

HSP 1 Score: 128 bits (321), Expect = 3.770e-37
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = 1 
Query:    7 MSDVAERVKKIVVEHLGVDGDKVKTEASFIDDLGADSLDTVELVMAFEEEFAIEIPDDAAETIQTVGDAVKFIEKA 234
            MSDVAERVKKIV++HLGV+ DKV   ASFIDDLGADSLDTVELVMAFEEEF IEIPDDAAETIQTVGDAVKFIEKA
Sbjct:    1 MSDVAERVKKIVIDHLGVEADKVTEGASFIDDLGADSLDTVELVMAFEEEFGIEIPDDAAETIQTVGDAVKFIEKA 76
[Close]
BLAST of mRNA_P-wetherbeei_contig16285.2.1 vs. uniprot
Match: A0A7V2WMX1_9HYPH (Acyl carrier protein n=2 Tax=root TaxID=1 RepID=A0A7V2WMX1_9HYPH)

HSP 1 Score: 127 bits (320), Expect = 5.360e-37
Identity = 67/77 (87.01%), Postives = 71/77 (92.21%), Query Frame = 1 
Query:    7 MSDVAERVKKIVVEHLGVDGDKVKTEASFIDDLGADSLDTVELVMAFEEEFAIEIPDDAAETIQTVGDAVKFIEKAA 237
            MSD  +RV KIVVEHLGV+ DKVKTEASFIDDLGADSLDTVELVMAFEEEF IEIPDDAAETIQTVGDAV FI+KA+
Sbjct:    1 MSDTTDRVAKIVVEHLGVEADKVKTEASFIDDLGADSLDTVELVMAFEEEFGIEIPDDAAETIQTVGDAVSFIDKAS 77
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BLAST of mRNA_P-wetherbeei_contig16285.2.1 vs. uniprot
Match: ACP_CHESB (Acyl carrier protein n=18 Tax=Hyphomicrobiales TaxID=356 RepID=ACP_CHESB)

HSP 1 Score: 127 bits (318), Expect = 1.080e-36
Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = 1 
Query:    7 MSDVAERVKKIVVEHLGVDGDKVKTEASFIDDLGADSLDTVELVMAFEEEFAIEIPDDAAETIQTVGDAVKFIEKA 234
            MSD AERVKKIVVEHLGVD DKV  +ASFIDDLGADSLDTVELVMAFEEEF +EIPDDAAETI TVGDAVK+IEKA
Sbjct:    1 MSDTAERVKKIVVEHLGVDADKVTEQASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILTVGDAVKYIEKA 76
[Close]
BLAST of mRNA_P-wetherbeei_contig16285.2.1 vs. uniprot
Match: A0A1I5FWD5_9HYPH (Acyl carrier protein n=9 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1I5FWD5_9HYPH)

HSP 1 Score: 126 bits (317), Expect = 1.540e-36
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 1 
Query:    7 MSDVAERVKKIVVEHLGVDGDKVKTEASFIDDLGADSLDTVELVMAFEEEFAIEIPDDAAETIQTVGDAVKFIEKAAN 240
            MSD+AERVKKIV+EHLGVD +KV   ASFIDDLGADSLDTVELVMAFEEEF  EIPDDAAETIQTVGDAV F+ KAAN
Sbjct:    1 MSDIAERVKKIVIEHLGVDAEKVTESASFIDDLGADSLDTVELVMAFEEEFGTEIPDDAAETIQTVGDAVSFLTKAAN 78
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BLAST of mRNA_P-wetherbeei_contig16285.2.1 vs. uniprot
Match: ACP_RHILO (Acyl carrier protein AcpP n=235 Tax=Bacteria TaxID=2 RepID=ACP_RHILO)

HSP 1 Score: 125 bits (315), Expect = 3.110e-36
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 1 
Query:    7 MSDVAERVKKIVVEHLGVDGDKVKTEASFIDDLGADSLDTVELVMAFEEEFAIEIPDDAAETIQTVGDAVKFIEKAA 237
            MSD AERVKKIV+EHLGVD DKV  +ASFIDDLGADSLDTVELVMAFEEEF +EIPDDAAETI TVGDAVK+I+KA+
Sbjct:    1 MSDTAERVKKIVIEHLGVDADKVTEQASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILTVGDAVKYIDKAS 77
[Close]
BLAST of mRNA_P-wetherbeei_contig16285.2.1 vs. uniprot
Match: ACP_BRUA1 (Acyl carrier protein n=151 Tax=Proteobacteria TaxID=1224 RepID=ACP_BRUA1)

HSP 1 Score: 125 bits (315), Expect = 3.110e-36
Identity = 67/77 (87.01%), Postives = 70/77 (90.91%), Query Frame = 1 
Query:    7 MSDVAERVKKIVVEHLGVDGDKVKTEASFIDDLGADSLDTVELVMAFEEEFAIEIPDDAAETIQTVGDAVKFIEKAA 237
            MSD AERVKKIVVEHLGVD DKV   ASFIDDLGADSLDTVELVMAFEEEF +EIPDDAAETI TVGDAVKFI+KA+
Sbjct:    1 MSDTAERVKKIVVEHLGVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILTVGDAVKFIDKAS 77
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16285.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A847ZU82_9HYPH2.360e-4094.74Acyl carrier protein n=2 Tax=Hyphomicrobiales TaxI... [more]
A0A6G6WZB7_9HYPH3.920e-3992.21Acyl carrier protein n=7 Tax=Alphaproteobacteria T... [more]
A0A7S8C789_9HYPH9.260e-3890.67Acyl carrier protein n=2 Tax=Parvibaculaceae TaxID... [more]
UPI0018C58B241.920e-3788.31acyl carrier protein n=1 Tax=Aestuariivirga litora... [more]
A0A8J3DLU2_9HYPH3.770e-3789.47Acyl carrier protein n=1 Tax=Limoniibacter endophy... [more]
A0A7V2WMX1_9HYPH5.360e-3787.01Acyl carrier protein n=2 Tax=root TaxID=1 RepID=A0... [more]
ACP_CHESB1.080e-3688.16Acyl carrier protein n=18 Tax=Hyphomicrobiales Tax... [more]
A0A1I5FWD5_9HYPH1.540e-3684.62Acyl carrier protein n=9 Tax=Alphaproteobacteria T... [more]
ACP_RHILO3.110e-3684.42Acyl carrier protein AcpP n=235 Tax=Bacteria TaxID... [more]
ACP_BRUA13.110e-3687.01Acyl carrier protein n=151 Tax=Proteobacteria TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16285contigP-wetherbeei_contig16285:752..994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1380380.JIAX01000009_gene1676
Preferred nameacpP
PFAMsPP-binding
Model size243
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02078
Hectar predicted targeting categoryother localisation
GOsGO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509
Exons1
Evalue2.82e-38
EggNOG OGsCOG0236@1|root,COG0236@2|Bacteria,1MZ4P@1224|Proteobacteria,2UBWW@28211|Alphaproteobacteria
DescriptionCarrier of the growing fatty acid chain in fatty acid biosynthesis
Cds size237
COG categoryIQ
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186082.0549328-CDS-P-wetherbeei_contig16285:751..9881683186082.0549328-CDS-P-wetherbeei_contig16285:751..988Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16285 752..988 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186082.0654485-UTR-P-wetherbeei_contig16285:988..9941683186082.0654485-UTR-P-wetherbeei_contig16285:988..994Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16285 989..994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16285.2.1prot_P-wetherbeei_contig16285.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16285 752..988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16285.2.1

>prot_P-wetherbeei_contig16285.2.1 ID=prot_P-wetherbeei_contig16285.2.1|Name=mRNA_P-wetherbeei_contig16285.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
MSDVAERVKKIVVEHLGVDGDKVKTEASFIDDLGADSLDTVELVMAFEEE
FAIEIPDDAAETIQTVGDAVKFIEKAAN*
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mRNA from alignment at P-wetherbeei_contig16285:752..994-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16285.2.1 ID=mRNA_P-wetherbeei_contig16285.2.1|Name=mRNA_P-wetherbeei_contig16285.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig16285:752..994- (Phaeothamnion wetherbeei SAG_119_79)
TTAAACATGAGTGACGTTGCTGAGCGGGTAAAAAAGATCGTTGTCGAGCA
CCTCGGTGTGGACGGCGATAAAGTGAAAACCGAGGCAAGCTTTATTGACG
ACCTCGGTGCCGACAGCCTCGACACGGTTGAGCTCGTCATGGCATTCGAA
GAAGAATTCGCCATTGAAATTCCCGACGACGCTGCCGAAACAATCCAGAC
TGTTGGCGATGCAGTGAAGTTTATTGAGAAGGCAGCAAACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16285:752..994-

>mRNA_P-wetherbeei_contig16285.2.1 ID=mRNA_P-wetherbeei_contig16285.2.1|Name=mRNA_P-wetherbeei_contig16285.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig16285:752..994- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGACGTTGCTGAGCGGGTAAAAAAGATCGTTGTCGAGCACCTCGG
TGTGGACGGCGATAAAGTGAAAACCGAGGCAAGCTTTATTGACGACCTCG
GTGCCGACAGCCTCGACACGGTTGAGCTCGTCATGGCATTCGAAGAAGAA
TTCGCCATTGAAATTCCCGACGACGCTGCCGAAACAATCCAGACTGTTGG
CGATGCAGTGAAGTTTATTGAGAAGGCAGCAAACTGA
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