mRNA_P-wetherbeei_contig16244.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16244.1.1
Unique NamemRNA_P-wetherbeei_contig16244.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16244.1.1 vs. uniprot
Match: D7FQ81_ECTSI (DUF4206 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ81_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 4.830e-28
Identity = 65/160 (40.62%), Postives = 90/160 (56.25%), Query Frame = 1 
Query:    1 FPDPFELGTLEEKTVKAHFDKLAPAYKASSGLKKVQQRVSEYFRETEKFLHDLSASADRSSDLRDSVCAAVVAFAGSCDVRGMMREQSDVTMSLQPADKVGGGLQPEGNEEALLAAQGHACRGCGCAIGSDFLGMRKDYHPCRHAGALFCRRRCHSDAHR 480
            FPDPFELGTLEEK ++ H DKL P +KA+S  +K+  RV  Y     +FL  L A  +  +D+R  +   +     +CD  G  R + D  + ++  D  GG L     +E  L  Q   C  CG AI ++FLG++KDY PCR+A  LFCR  CH++  R
Sbjct: 1118 FPDPFELGTLEEKILRVHCDKLTPNFKANSPTRKLAARVGSYLSGLLRFLGVLEAVGE--ADVRSRMSRVLHDALSTCDRVGRKRRRGDFALGVRIRDIAGGKLGSGVGDEERLRVQKRRCMSCGRAIAAEFLGIKKDYFPCRYADGLFCRSYCHAEDRR 1275
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BLAST of mRNA_P-wetherbeei_contig16244.1.1 vs. uniprot
Match: A0A6H5KEI0_9PHAE (DUF4206 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI0_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.360e-10
Identity = 35/99 (35.35%), Postives = 51/99 (51.52%), Query Frame = 1 
Query:  184 DLRDSVCAAVVAFAGSCDVRGMMREQSDVTMSLQPADKVGGGLQPEGNEEALLAAQGHACRGCGCAIGSDFLGMRKDYHPCRHAGALFCRRRCHSDAHR 480
            D+R  +   +     +CD  G  R + D  + ++  D  GG L     +E  L  Q   C  CG  I ++FLG++KDY PCR+A  LFCR  CH++  R
Sbjct: 1256 DVRSRMSRVLNDALSTCDRVGRKRRRGDFALGVRIRDIAGGKLGSGVGDEERLRIQKRRCMSCGRTIAAEFLGIKKDYFPCRYADGLFCRSYCHAEDRR 1354
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16244.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ81_ECTSI4.830e-2840.63DUF4206 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KEI0_9PHAE1.360e-1035.35DUF4206 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16244contigP-wetherbeei_contig16244:349..1280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQ81
Preferred namePLEKHM2
PFAMsPH,RUN,zf-RING_9
Model size480
Max annot lvl2759|Eukaryota
KEGG koko:K15348
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0006996,GO:0007030,GO:0008092,GO:0008150,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0016020,GO:0016043,GO:0019894,GO:0031090,GO:0031410,GO:0031982,GO:0032418,GO:0032879,GO:0032880,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051179,GO:0051640,GO:0051641,GO:0065007,GO:0071840,GO:0097708,GO:0098588,GO:0098805,GO:1903525,GO:1903527,GO:1903729
Exons3
Evalue7.93e-29
EggNOG OGsKOG1829@1|root,KOG1829@2759|Eukaryota
Descriptionpositive regulation of ruffle assembly
Cds size480
COG categoryS
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186081.0225997-CDS-P-wetherbeei_contig16244:348..5841683186081.0225997-CDS-P-wetherbeei_contig16244:348..584Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16244 349..584 -
1683186081.033623-CDS-P-wetherbeei_contig16244:816..9731683186081.033623-CDS-P-wetherbeei_contig16244:816..973Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16244 817..973 -
1683186081.0432103-CDS-P-wetherbeei_contig16244:1193..12801683186081.0432103-CDS-P-wetherbeei_contig16244:1193..1280Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16244 1194..1280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16244.1.1prot_P-wetherbeei_contig16244.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16244 349..1280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16244.1.1

>prot_P-wetherbeei_contig16244.1.1 ID=prot_P-wetherbeei_contig16244.1.1|Name=mRNA_P-wetherbeei_contig16244.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
FPDPFELGTLEEKTVKAHFDKLAPAYKASSGLKKVQQRVSEYFRETEKFL
HDLSASADRSSDLRDSVCAAVVAFAGSCDVRGMMREQSDVTMSLQPADKV
GGGLQPEGNEEALLAAQGHACRGCGCAIGSDFLGMRKDYHPCRHAGALFC
RRRCHSDAHR
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mRNA from alignment at P-wetherbeei_contig16244:349..1280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16244.1.1 ID=mRNA_P-wetherbeei_contig16244.1.1|Name=mRNA_P-wetherbeei_contig16244.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=932bp|location=Sequence derived from alignment at P-wetherbeei_contig16244:349..1280- (Phaeothamnion wetherbeei SAG_119_79)
TTTCCAGACCCGTTCGAGCTGGGAACGCTCGAGGAGAAGACCGTCAAAGC
GCATTTCGACAAGCTTGCGCCGGCGTACAAGGCAAGCGTTTTCCGTAGAA
ATGAGGGAGAGAGAGTGTGGTTTATGGCCAGGGTACTGAGAAGCGGGGGC
TCCCATATATGTGAGGGCGGTACGTATTTTCTTAGGTTATGCCATTTGCA
GTGTGCGTGTGCTGCTTCTGTTGATATGCCTGACAGCACTCTTACCGCAC
CTTAACGGCCGTCCTGTCATCCTTCCTTTGACCGCCTCGAGAATAAAACA
GGTTAAGTCGGGCCTCAAAAAGGTGCAGCAGCGGGTGTCAGAATATTTCA
GAGAAACCGAAAAGTTTCTCCACGACCTGTCTGCTTCTGCGGACCGCAGC
AGCGATCTGCGCGATAGCGTCTGCGCCGCTGTAGTCGCCTTTGCCGGCTC
CTGTGACGTCAGAGGTAAGTCGCAGACCGGCGGCAGATGAGCATCGCTGT
TGCACCCACCGGCTATCTGACAAGAGAGAAGCAAACTTGTGCAGTTCGAA
TCGGTGCCACCACTGCTGGTCGTAATACCACCACTTTCGCCCCCGTTGCC
GCTATTTCTTCTGCTGCTTCCACCACACCTGCCATCATCGCTGCTCTACT
ACGCTGTCGCTGTCGTCGCCTCCGCCGCTGCCGCTGCTGCGGCCAGGGAT
GATGCGGGAGCAGTCGGATGTGACGATGTCGCTGCAGCCGGCCGACAAGG
TGGGCGGCGGGCTGCAGCCGGAGGGCAACGAAGAGGCGTTGCTCGCGGCC
CAGGGCCACGCCTGCCGCGGCTGCGGCTGCGCCATCGGCTCGGACTTTTT
GGGGATGCGCAAAGACTACCACCCGTGCCGGCACGCCGGCGCGCTTTTCT
GCCGCCGCCGCTGCCACTCGGACGCGCACAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16244:349..1280-

>mRNA_P-wetherbeei_contig16244.1.1 ID=mRNA_P-wetherbeei_contig16244.1.1|Name=mRNA_P-wetherbeei_contig16244.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig16244:349..1280- (Phaeothamnion wetherbeei SAG_119_79)
TTTCCAGACCCGTTCGAGCTGGGAACGCTCGAGGAGAAGACCGTCAAAGC
GCATTTCGACAAGCTTGCGCCGGCGTACAAGGCAAGCTCGGGCCTCAAAA
AGGTGCAGCAGCGGGTGTCAGAATATTTCAGAGAAACCGAAAAGTTTCTC
CACGACCTGTCTGCTTCTGCGGACCGCAGCAGCGATCTGCGCGATAGCGT
CTGCGCCGCTGTAGTCGCCTTTGCCGGCTCCTGTGACGTCAGAGGGATGA
TGCGGGAGCAGTCGGATGTGACGATGTCGCTGCAGCCGGCCGACAAGGTG
GGCGGCGGGCTGCAGCCGGAGGGCAACGAAGAGGCGTTGCTCGCGGCCCA
GGGCCACGCCTGCCGCGGCTGCGGCTGCGCCATCGGCTCGGACTTTTTGG
GGATGCGCAAAGACTACCACCCGTGCCGGCACGCCGGCGCGCTTTTCTGC
CGCCGCCGCTGCCACTCGGACGCGCACAGG
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