mRNA_P-wetherbeei_contig16231.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16231.1.1
Unique NamemRNA_P-wetherbeei_contig16231.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16231.1.1 vs. uniprot
Match: D7FWX3_ECTSI (Axonemal 1-beta dynein heavy chain dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX3_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 7.810e-96
Identity = 153/234 (65.38%), Postives = 184/234 (78.63%), Query Frame = 1
Query:   10 QFWRSRTVDLSGISEQLSRRDVRLATAVLEAAKSSYLAPFMTLSQHIQRGSVEARDNLRFLERLTEPCVQLAAAAPRDIPALLPGLLACVRAVWSLSLYYNTDERLTGLLRKISNEIIRRCCSHIRLDDLFDGSVDSVVVALNESRRCGDQWKAVYRRTAALIRRSTADKKVCRHWDFDEASIFAQIDAFVQRCCDLLEICEGQMQFARKSSATGGKPGPLPEFGGTRGPETAK 711
            +FWR R VDLSGISEQL R DV++  ++L+ A SSYLAPF  LSQ I+ GSVEA +NL+FLE +T PC  L  A P++IPALLPGLL+C+R +W+LS +YNT+ERLTGLLRKISNEII RCC+ I L  +FDG +D+ +  LNESR CG +WKAVYRRTA L+RRST +    RHWDFDEASIFAQIDAFVQRC +LLE+CE Q+Q ARK+   GG+ G LPEFGGTRG E  K
Sbjct:  327 EFWRCRMVDLSGISEQLLRPDVQVVVSILDTANSSYLAPFNVLSQRIKEGSVEANNNLKFLESITTPCQNLTMAKPKEIPALLPGLLSCIRMIWNLSKFYNTEERLTGLLRKISNEIIHRCCAEIDLGAIFDGDIDAAMTVLNESRACGVEWKAVYRRTALLVRRSTPEPS--RHWDFDEASIFAQIDAFVQRCSELLEVCESQIQLARKTMGEGGESGALPEFGGTRGQEITK 558          
BLAST of mRNA_P-wetherbeei_contig16231.1.1 vs. uniprot
Match: A0A835Z4V1_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V1_9STRA)

HSP 1 Score: 305 bits (782), Expect = 6.150e-92
Identity = 150/234 (64.10%), Postives = 182/234 (77.78%), Query Frame = 1
Query:   10 QFWRSRTVDLSGISEQLSRRDVRLATAVLEAAKSSYLAPFMTLSQHIQRGSVEARDNLRFLERLTEPCVQLAAAAPRDIPALLPGLLACVRAVWSLSLYYNTDERLTGLLRKISNEIIRRCCSHIRLDDLFDGSVDSVVVALNESRRCGDQWKAVYRRTAALIRRSTADKKVCRHWDFDEASIFAQIDAFVQRCCDLLEICEGQMQFARKSSATGGKPGPLPEFGGTRGPETAK 711
            QFWRSRTVDLSGIS QL RRDV+   AVLEAA SSYL PF+TLSQ I+ GS EA +NL+FL+ +  PC  LA A P  IPALLP LL C+R +W+LS YYNT+ERL+ LLRKISN+II RCC+ I L+DL+ G VD+V+V L+++R C   WKAVYR+TAAL+ +S +D    RHW FD+AS+FAQIDAF QRC DLLE+CEGQ+QFAR +SA+ G+   LPEFGGTRG E  K
Sbjct:  154 QFWRSRTVDLSGISAQLVRRDVKQLVAVLEAANSSYLGPFLTLSQRIKEGSAEAENNLKFLQTIVAPCKALAVATPAGIPALLPNLLNCIRMIWTLSKYYNTEERLSSLLRKISNQIIHRCCAAISLEDLYSGRVDTVMVVLHQARACASTWKAVYRKTAALVAQSASDP--ARHWTFDDASLFAQIDAFAQRCSDLLELCEGQVQFARATSASRGRALDLPEFGGTRGQELGK 385          
BLAST of mRNA_P-wetherbeei_contig16231.1.1 vs. uniprot
Match: A0A7S1TUK2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUK2_9STRA)

HSP 1 Score: 259 bits (661), Expect = 4.150e-84
Identity = 128/211 (60.66%), Postives = 156/211 (73.93%), Query Frame = 1
Query:   13 FWRSRTVDLSGISEQLSRRDVRLATAVLEAAKSSYLAPFMTLSQHIQRGSVEARDNLRFLERLTEPCVQLAAAAPRDIPALLPGLLACVRAVWSLSLYYNTDERLTGLLRKISNEIIRRCCSHIRLDDLFDGSVDSVVVALNESRRCGDQWKAVYRRTAALIRRSTADKKVCRHWDFDEASIFAQIDAFVQRCCDLLEICEGQMQFARKSS 645
            FWRSRTVDLSGIS QL R DV+    VLE A SSYL PF TLSQ +  G VEA DNL++LE +T PC  L+ AAP +IP +LP LL  +R +W  S +YNT+ERLT LLRKISNEII RC S+IRLD++FDG+V+  +V L E   CG  WK ++RRT   I  +  DK   +HWDFDEASIFAQ++AFVQRC +L+E+C GQMQFARKS+
Sbjct:   23 FWRSRTVDLSGISAQLEREDVQKVVMVLEIANSSYLLPFETLSQRVIEGGVEAEDNLKYLESITAPCTNLSKAAPSEIPNILPQLLNYIRMIWHHSRFYNTEERLTSLLRKISNEIISRCRSNIRLDEIFDGNVEESMVPLEEGIACGVMWKQIFRRTVRAIEINVQDKG--QHWDFDEASIFAQVEAFVQRCRELIEVCAGQMQFARKSA 231          
BLAST of mRNA_P-wetherbeei_contig16231.1.1 vs. uniprot
Match: A0A0L0H969_SPIPD (Dynein heavy chain, cytoplasmic n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H969_SPIPD)

HSP 1 Score: 273 bits (697), Expect = 1.610e-80
Identity = 137/234 (58.55%), Postives = 172/234 (73.50%), Query Frame = 1
Query:   10 QFWRSRTVDLSGISEQLSRRDVRLATAVLEAAKSSYLAPFMTLSQHIQRGSVEARDNLRFLERLTEPCVQLAAAAPRDIPALLPGLLACVRAVWSLSLYYNTDERLTGLLRKISNEIIRRCCSHIRLDDLFDGSVDSVVVALNESRRCGDQWKAVYRRTAALIRRSTADKKVCRHWDFDEASIFAQIDAFVQRCCDLLEICEGQMQFARKSSATGGKPGPLPEFGGTRGPETAK 711
            QFWRSR  DLSGISEQL+R DV+    VLE AKSSYL  F+ L+  IQ G+ +A++NL+FL  LT+PC  LA   P+ IPA+LP LL C+R +W  S YYNT ERLT LLRK+SNEIIRRCC+ I L+D+F G V   +V+L +S +CG+ WKA+Y+RT   I + +  +     WDFDE+SIFAQIDAFVQRC DLLE+CEGQ+QFARK +  GG+  P+P FGG+RGPE  K
Sbjct:  327 QFWRSRCDDLSGISEQLNRGDVQQILKVLELAKSSYLEQFVRLANLIQEGTAQAQENLKFLSTLTDPCQTLANTEPKSIPAILPKLLNCIRIIWENSRYYNTKERLTSLLRKVSNEIIRRCCAKISLEDIFHGDVQVSMVSLQDSIKCGESWKAIYKRTCQHIAKYSKGR-----WDFDESSIFAQIDAFVQRCRDLLEVCEGQIQFARKIN--GGEKAPIPFFGGSRGPEIGK 553          
BLAST of mRNA_P-wetherbeei_contig16231.1.1 vs. uniprot
Match: A0A4P9WQZ0_9FUNG (Dynein heavy chain, cytoplasmic n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WQZ0_9FUNG)

HSP 1 Score: 267 bits (682), Expect = 1.670e-78
Identity = 135/241 (56.02%), Postives = 170/241 (70.54%), Query Frame = 1
Query:   13 FWRSRTVDLSGISEQLSRRDVRLATAVLEAAKSSYLAPFMTLSQHIQRGSVEARDNLRFLERLTEPCVQLAAAAPRDIPALLPGLLACVRAVWSLSLYYNTDERLTGLLRKISNEIIRRCCSHIRLDDLFDGSVDSVVVALNESRRCGDQWKAVYRRTAALIRRSTADKKVCRH--------WDFDEASIFAQIDAFVQRCCDLLEICEGQMQFARKSSATGGKPGPLPEFGGTRGPETAK 711
            FWRSR  DLSGISEQL+R DVR   +VLE AKSSYL  FM L+  IQ G+++A+DNLRFL  L + C  LA A P+ IP++LP LL C+R +W+ S YYN+ ERLT LLRK+SNEIIRRCC+ I LD++F G +   +++L +S  CG+ WK +Y             KK+C+H        WDFD++SIFAQIDAFVQRC DLLE+CEGQ+QFARK    GG+  P+P FGG+RGPE AK
Sbjct:  243 FWRSRCDDLSGISEQLNRSDVRQIISVLELAKSSYLEQFMRLANLIQEGTIQAQDNLRFLSTLNDSCYVLAEAEPKSIPSILPKLLNCIRIIWANSRYYNSKERLTSLLRKVSNEIIRRCCAKISLDEIFHGDMQISIISLQDSINCGEAWKVIY-------------KKMCQHVVKFSRGVWDFDQSSIFAQIDAFVQRCRDLLEVCEGQIQFARKID--GGEKAPIPFFGGSRGPEIAK 468          
BLAST of mRNA_P-wetherbeei_contig16231.1.1 vs. uniprot
Match: A0A2R5GWD4_9STRA (Dynein heavy chain 2, axonemal n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWD4_9STRA)

HSP 1 Score: 267 bits (682), Expect = 1.670e-78
Identity = 138/235 (58.72%), Postives = 170/235 (72.34%), Query Frame = 1
Query:   10 QFWRSRTVDLSGISEQLSRRDVRLATAVLEAAKSSYLAPFMTLSQHIQRGSVEARDNLRFLERLTEPCVQLAAAAPRDIPALLPGLLACVRAVWSLSLYYNTDERLTGLLRKISNEIIRRCCSHIRLDDLFDGSVDSVVVALNESRRCGDQWKAVYRRTAALIRRSTADKKVCRHWDFDEASIFAQIDAFVQRCCDLLEICEGQMQFARKS-SATGGKPGPLPEFGGTRGPETAK 711
            QFWRSRT DLSGIS+QL +  ++   AVLE  KSSYLAPF +++  IQRGS EA DNL FL  L +PC  L+ A P DIP +LP +LA +R + + S +YNT+ERLTGLLRK+SNEIIR CC  IRL ++FDG V++ +V L+ES   G  WK +Y+RTA  +   T D+   +HW+FD ASIFAQ+DAFVQRC DLLE+CEGQ+QFARKS     G   PLP FGGTRG E AK
Sbjct:  343 QFWRSRTQDLSGISQQLEKPGIQKIVAVLECVKSSYLAPFQSIADMIQRGSQEATDNLHFLSLLFDPCFSLSRAKPSDIPKILPEILAFIRIICTASKFYNTEERLTGLLRKVSNEIIRCCCGKIRLSEIFDGDVEASMVQLHESIAGGVAWKQLYKRTADAVAMHTKDES--KHWNFDIASIFAQVDAFVQRCRDLLEVCEGQIQFARKSRDLPRGVRAPLPVFGGTRGAEIAK 575          
BLAST of mRNA_P-wetherbeei_contig16231.1.1 vs. uniprot
Match: A0A8J6CA31_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CA31_DIALT)

HSP 1 Score: 266 bits (679), Expect = 4.220e-78
Identity = 137/235 (58.30%), Postives = 168/235 (71.49%), Query Frame = 1
Query:   10 QFWRSRTVDLSGISEQLSRRDVRLATAVLEAAKSSYLAPFMTLSQHIQRGSVEARDNLRFLERLTEPCVQLAAAAPRDIPALLPGLLACVRAVWSLSLYYNTDERLTGLLRKISNEIIRRCCSHIRLDDLFDGSVDSVVVALNESRRCGDQWKAVYRRT-AALIRRSTADKKVCRHWDFDEASIFAQIDAFVQRCCDLLEICEGQMQFARKSSATGGKPGPLPEFGGTRGPETAK 711
            QFWRSRT++L GISEQL R  V+   AVL  AKSSYL PF+ LS  IQ G+ EA DNLRFLE+L EPC +LAAA P+ IP +LP +L C R +WS S +YNT ++LTGLLRK+S+E+I RCC+ I L D+FDG V S +V L+ES   G+ W+  Y +   A+ R + AD    R W+FDE+SIFAQIDAFVQRC DLL++CEGQ+QFARK  A GG    LP FGG R  E AK
Sbjct:  268 QFWRSRTINLGGISEQLERDGVKQIVAVLALAKSSYLEPFLKLSHLIQVGTTEAVDNLRFLEKLQEPCERLAAAKPKQIPQILPAILNCARLIWSTSRFYNTPDKLTGLLRKVSSEVIARCCAQISLPDIFDGDVLSSIVTLHESIEAGEAWRKAYGQALVAMGRAAAADGGRARLWEFDESSIFAQIDAFVQRCRDLLDVCEGQIQFARK--AAGGAQTALPSFGGARAVEVAK 500          
BLAST of mRNA_P-wetherbeei_contig16231.1.1 vs. uniprot
Match: A0A507E164_9FUNG (Dynein heavy chain, cytoplasmic n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E164_9FUNG)

HSP 1 Score: 258 bits (660), Expect = 1.510e-75
Identity = 132/234 (56.41%), Postives = 169/234 (72.22%), Query Frame = 1
Query:   10 QFWRSRTVDLSGISEQLSRRDVRLATAVLEAAKSSYLAPFMTLSQHIQRGSVEARDNLRFLERLTEPCVQLAAAAPRDIPALLPGLLACVRAVWSLSLYYNTDERLTGLLRKISNEIIRRCCSHIRLDDLFDGSVDSVVVALNESRRCGDQWKAVYRRTAALIRRSTADKKVCRHWDFDEASIFAQIDAFVQRCCDLLEICEGQMQFARKSSATGGKPGPLPEFGGTRGPETAK 711
            QFWRSR  DLSGIS+QL+R DV+    +L+ AKSSYL  F+ L   IQ G+++A++NL+FL  LT+PC  LA   P+ IPA+LP LL C+R +W+ S YYNT ERLT LLRK+SNEIIRRC + I LD +F G V S ++ L ES  CG+ WKA+Y+RT   I + +  +     WDFDE+SIFAQIDAFVQRC DLLE+CEGQ+QFARK +  GG+  P+P FGG++G E  K
Sbjct:  288 QFWRSRCEDLSGISDQLNRADVQQILKILDMAKSSYLEQFVRLVNLIQEGTMQAQENLKFLSTLTDPCEILANTEPKSIPAILPRLLNCIRLIWANSNYYNTKERLTSLLRKVSNEIIRRCGAKISLDGIFHGDVQSSMMNLQESINCGESWKAIYKRTCHHIAKFSKGR-----WDFDESSIFAQIDAFVQRCRDLLEVCEGQIQFARKLN--GGEKAPIPFFGGSKGLEIGK 514          
BLAST of mRNA_P-wetherbeei_contig16231.1.1 vs. uniprot
Match: A0A5B8MZU6_9CHLO (Heavy chain of dynein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MZU6_9CHLO)

HSP 1 Score: 254 bits (650), Expect = 3.320e-74
Identity = 127/234 (54.27%), Postives = 166/234 (70.94%), Query Frame = 1
Query:   10 QFWRSRTVDLSGISEQLSRRDVRLATAVLEAAKSSYLAPFMTLSQHIQRGSVEARDNLRFLERLTEPCVQLAAAAPRDIPALLPGLLACVRAVWSLSLYYNTDERLTGLLRKISNEIIRRCCSHIRLDDLFDGSVDSVVVALNESRRCGDQWKAVYRRTAALIRRSTADKKVCRHWDFDEASIFAQIDAFVQRCCDLLEICEGQMQFARKSSATGGKPGPLPEFGGTRGPETAK 711
            +FWRSR+VDL GI EQL    V+    VLEA+KSSYLAPF++LS +IQR ++ A DNL+FL  L +PC  LA A+P++IP LLP LL C+R +W++S +YNT ERLTGLLRK+SNEII+RCC+ I L ++F+G V+  +V L ES + G++WK  Y +TA  + +S A     + WDFD +SIFA  DAFVQRC D+LE+CE Q+QFA K+         LP FGGT GPE  K
Sbjct:  234 EFWRSRSVDLGGIREQLEYEKVKDIVKVLEASKSSYLAPFLSLSNNIQRQTMAAEDNLKFLLSLEKPCQLLAKASPKEIPHLLPKLLHCIRMIWNISRFYNTPERLTGLLRKVSNEIIQRCCAKISLAEIFEGDVEKCMVLLQESIKAGEEWKQAYLKTAKAVSKSKA-----KPWDFDVSSIFAHTDAFVQRCRDMLEVCEAQLQFAPKTD--------LPSFGGTHGPEVTK 454          
BLAST of mRNA_P-wetherbeei_contig16231.1.1 vs. uniprot
Match: A0A507FN43_9FUNG (Dynein heavy chain, cytoplasmic n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FN43_9FUNG)

HSP 1 Score: 254 bits (649), Expect = 4.530e-74
Identity = 131/235 (55.74%), Postives = 164/235 (69.79%), Query Frame = 1
Query:   10 QFWRSRTVDLSGISEQLSRRDVRLATAVLEAAKSSYLAPFMTLSQHIQRGSVEARDNLRFLERLTEPCVQLAAAAPRDIPALLPGLLACVRAVWSLSLYYNTDERLTGLLRKISNEIIRRCCSHIRLDDLFDGSVDSVVVALNESRRCGDQWKAVYRRTAALIRRSTADKKVCRH-WDFDEASIFAQIDAFVQRCCDLLEICEGQMQFARKSSATGGKPGPLPEFGGTRGPETAK 711
            QFWRSR  DLSGISEQL+R D++   AVLE AKSSYL  F+ LS  I+ G+ +A+DNL+FL  LTEPC  L  + P+DI  +LP LL C+R +W+ S  YNT ERLT LLRK+S+EII RCC+ I L+++F G V   + +L +S  CG+ WK  Y++    I       K C   WDFD++SIFAQIDAFVQRC DLLE+CEGQ+QFARK    GG   P+P FGGT+GPE AK
Sbjct:  254 QFWRSRCDDLSGISEQLNRTDLKEILAVLELAKSSYLEQFLRLSNLIKEGTSQAQDNLKFLSTLTEPCQVLNTSEPKDIIVILPRLLNCIRMIWANSKNYNTKERLTSLLRKVSSEIISRCCAKISLEEIFHGDVHVSMTSLQDSINCGESWKNAYKKQVTHI------AKFCESTWDFDQSSIFAQIDAFVQRCRDLLEVCEGQIQFARK--VVGGDKAPIPTFGGTKGPEIAK 480          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16231.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWX3_ECTSI7.810e-9665.38Axonemal 1-beta dynein heavy chain dynein heavy ch... [more]
A0A835Z4V1_9STRA6.150e-9264.10Dynein heavy chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S1TUK2_9STRA4.150e-8460.66Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A0L0H969_SPIPD1.610e-8058.55Dynein heavy chain, cytoplasmic n=2 Tax=Spizellomy... [more]
A0A4P9WQZ0_9FUNG1.670e-7856.02Dynein heavy chain, cytoplasmic n=1 Tax=Blyttiomyc... [more]
A0A2R5GWD4_9STRA1.670e-7858.72Dynein heavy chain 2, axonemal n=1 Tax=Hondaea fer... [more]
A0A8J6CA31_DIALT4.220e-7858.30Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A507E164_9FUNG1.510e-7556.41Dynein heavy chain, cytoplasmic n=1 Tax=Powellomyc... [more]
A0A5B8MZU6_9CHLO3.320e-7454.27Heavy chain of dynein n=1 Tax=Chloropicon primus T... [more]
A0A507FN43_9FUNG4.530e-7455.74Dynein heavy chain, cytoplasmic n=1 Tax=Chytriomyc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16231contigP-wetherbeei_contig16231:132..1448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FWX3
Preferred nameDNAH2
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size711
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008017,GO:0008092,GO:0008150,GO:0008569,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0031514,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036156,GO:0036159,GO:0040011,GO:0042623,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045503,GO:0045505,GO:0048870,GO:0051179,GO:0051674,GO:0051959,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494,GO:1990939
Exons3
Evalue1.28e-96
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size711
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186080.9441886-CDS-P-wetherbeei_contig16231:131..3141683186080.9441886-CDS-P-wetherbeei_contig16231:131..314Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16231 132..314 -
1683186080.9553213-CDS-P-wetherbeei_contig16231:599..7971683186080.9553213-CDS-P-wetherbeei_contig16231:599..797Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16231 600..797 -
1683186080.9637432-CDS-P-wetherbeei_contig16231:1118..14481683186080.9637432-CDS-P-wetherbeei_contig16231:1118..1448Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16231 1119..1448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16231.1.1prot_P-wetherbeei_contig16231.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16231 132..1448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16231.1.1

>prot_P-wetherbeei_contig16231.1.1 ID=prot_P-wetherbeei_contig16231.1.1|Name=mRNA_P-wetherbeei_contig16231.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=237bp
MLRQFWRSRTVDLSGISEQLSRRDVRLATAVLEAAKSSYLAPFMTLSQHI
QRGSVEARDNLRFLERLTEPCVQLAAAAPRDIPALLPGLLACVRAVWSLS
LYYNTDERLTGLLRKISNEIIRRCCSHIRLDDLFDGSVDSVVVALNESRR
CGDQWKAVYRRTAALIRRSTADKKVCRHWDFDEASIFAQIDAFVQRCCDL
LEICEGQMQFARKSSATGGKPGPLPEFGGTRGPETAK
back to top

mRNA from alignment at P-wetherbeei_contig16231:132..1448-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16231.1.1 ID=mRNA_P-wetherbeei_contig16231.1.1|Name=mRNA_P-wetherbeei_contig16231.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1317bp|location=Sequence derived from alignment at P-wetherbeei_contig16231:132..1448- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCGTCAGTTCTGGCGGAGCCGGACGGTGGATCTCAGCGGTATCTC GGAGCAGCTTTCCCGCCGCGACGTCCGCCTCGCCACCGCCGTCCTCGAGG CGGCCAAGTCCTCCTACCTGGCCCCCTTCATGACGCTCAGCCAGCACATC CAGCGCGGCTCCGTGGAGGCGCGCGACAATCTCCGCTTTCTGGAGCGGCT GACAGAGCCGTGCGTGCAGCTGGCAGCGGCGGCGCCGCGGGACATTCCCG CACTGCTGCCGGGCCTGTTAGCGTGCGTGCGGGCGGTGTGGAGCCTCAGC CTCTACTACAACACGGACGAGCGCCTCACGGTGGGTGGTGGAGTCCGATG TCGGAGTCCTTCCTGGGCTTTTCTTTGTTCCTTCCTTCTTTTCGCCGCTG AATGCACGGCTTGGTTGTCGTGCGGATAACTCCCTTCTGGTGCTATGCTG TTTCTTTTGCAGATGTTCGGAGCACAGGAAAAGCCCGCCCGCCTTTCTCT GCCGTTCCATCCACTCCCCATCCATCGCTAATGGGATTCTCGGCACACTG AAGCCTCCAATTCCTCCTGCCCGCTTGCGCCACTGCTACCGCCAGCTGCC GCCACCACCCTCACCCCGTCACCAAACAATAACCCAACCGATTGATCCCA GGGTCTGTTGCGGAAGATCAGCAACGAGATCATCCGGCGCTGCTGCAGCC ACATCCGGCTGGACGACCTCTTTGACGGCAGCGTCGACTCGGTGGTGGTC GCGCTTAACGAGAGCCGCCGCTGCGGCGACCAGTGGAAGGCCGTCTACCG CCGCACCGCCGCCCTCATTCGCCGCAGCACCGCGGACAAGAAGGTCTGTG TATTTTAGAAGAGAAGAAGGGCAAATTGAGTTTGGTTTCGGAGATTGATG CCATTTTCTGAAGAATCATGCTGCCGTGGACAGAAGGAGCCAACGTTGAG GATGTTGGCGCTGAAAAGTGGCCTGTCGGGGTGCTGCTTTTCCGCATTCA CGTCTGCGGCTTCTTTTTGGGGCGCCAGTCTGACACCTTCCTGCTCTTTG TTGCTCGCCGCCACTGTCGGCACTGATTCCCCACGCCGCCGCTGGCGCTT CGCCGCTGACTGGCTGCTTGGCTCATCGCGGCAGCGGCACTGGGACTTCG ACGAGGCGTCCATCTTCGCGCAGATCGACGCCTTCGTGCAGCGTTGCTGT GACCTGCTCGAGATCTGCGAGGGGCAGATGCAGTTCGCCCGCAAGAGCAG CGCTACCGGCGGCAAGCCGGGACCACTGCCCGAGTTTGGCGGCACCCGCG GGCCGGAGACCGCCAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig16231:132..1448-

>mRNA_P-wetherbeei_contig16231.1.1 ID=mRNA_P-wetherbeei_contig16231.1.1|Name=mRNA_P-wetherbeei_contig16231.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=711bp|location=Sequence derived from alignment at P-wetherbeei_contig16231:132..1448- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCGTCAGTTCTGGCGGAGCCGGACGGTGGATCTCAGCGGTATCTC
GGAGCAGCTTTCCCGCCGCGACGTCCGCCTCGCCACCGCCGTCCTCGAGG
CGGCCAAGTCCTCCTACCTGGCCCCCTTCATGACGCTCAGCCAGCACATC
CAGCGCGGCTCCGTGGAGGCGCGCGACAATCTCCGCTTTCTGGAGCGGCT
GACAGAGCCGTGCGTGCAGCTGGCAGCGGCGGCGCCGCGGGACATTCCCG
CACTGCTGCCGGGCCTGTTAGCGTGCGTGCGGGCGGTGTGGAGCCTCAGC
CTCTACTACAACACGGACGAGCGCCTCACGGGTCTGTTGCGGAAGATCAG
CAACGAGATCATCCGGCGCTGCTGCAGCCACATCCGGCTGGACGACCTCT
TTGACGGCAGCGTCGACTCGGTGGTGGTCGCGCTTAACGAGAGCCGCCGC
TGCGGCGACCAGTGGAAGGCCGTCTACCGCCGCACCGCCGCCCTCATTCG
CCGCAGCACCGCGGACAAGAAGGTCTGTCGGCACTGGGACTTCGACGAGG
CGTCCATCTTCGCGCAGATCGACGCCTTCGTGCAGCGTTGCTGTGACCTG
CTCGAGATCTGCGAGGGGCAGATGCAGTTCGCCCGCAAGAGCAGCGCTAC
CGGCGGCAAGCCGGGACCACTGCCCGAGTTTGGCGGCACCCGCGGGCCGG
AGACCGCCAAG
back to top