mRNA_P-wetherbeei_contig1623.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1623.3.2
Unique NamemRNA_P-wetherbeei_contig1623.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1623.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1623contigP-wetherbeei_contig1623:2271..4638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1297
Hectar predicted targeting categoryother localisation
Exons3
Cds size1053
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186080.838547-UTR-P-wetherbeei_contig1623:2270..24551683186080.838547-UTR-P-wetherbeei_contig1623:2270..2455Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1623 2271..2455 -
1683186080.8691082-UTR-P-wetherbeei_contig1623:4579..46381683186080.8691082-UTR-P-wetherbeei_contig1623:4579..4638Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1623 4580..4638 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186080.8461802-CDS-P-wetherbeei_contig1623:2455..31431683186080.8461802-CDS-P-wetherbeei_contig1623:2455..3143Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1623 2456..3143 -
1683186080.8535798-CDS-P-wetherbeei_contig1623:3491..36161683186080.8535798-CDS-P-wetherbeei_contig1623:3491..3616Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1623 3492..3616 -
1683186080.8608735-CDS-P-wetherbeei_contig1623:4339..45791683186080.8608735-CDS-P-wetherbeei_contig1623:4339..4579Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1623 4340..4579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1623.3.2prot_P-wetherbeei_contig1623.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1623 2456..4579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1623.3.2

>prot_P-wetherbeei_contig1623.3.2 ID=prot_P-wetherbeei_contig1623.3.2|Name=mRNA_P-wetherbeei_contig1623.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=351bp
MQRTRKKEEFSSSSSSSLSSSDRRGEGEVKYDGRAEFVAYGWSTGWQFVR
SMLTNELTRVLELYVAPRFVSREVLDKLTKDSYKALKRMHAAGVDQRGAA
AAIIRTTSWGGVLYSSASVIIDDDQGQMGASQGPSVEAPPRPAVRLLLLR
PLREPRTGRRGHWLRDAASRAQPAGTGHSGWRQHFCLRCRCAAVAAQAPA
GSGAAAISAIATIAAAAAKAAGARPKVADRREAGSASLPRLKPEVFAAGR
WWQPQGRRLDRTAASASPVLPALPWEACIGGLPLQGCPPMHHSGAARWMD
SRHRGQRRLGGVASRERPSGLHPGCSELQRRWLWSLVPFPRRSDWLRKAG
*
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mRNA from alignment at P-wetherbeei_contig1623:2271..4638-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1623.3.2 ID=mRNA_P-wetherbeei_contig1623.3.2|Name=mRNA_P-wetherbeei_contig1623.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2368bp|location=Sequence derived from alignment at P-wetherbeei_contig1623:2271..4638- (Phaeothamnion wetherbeei SAG_119_79)
AGGCGCTGCTCGCCGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAAACGAC
GCGGGCTCCATGCAGCGGACAAGAAAAAAGGAGGAATTTTCCTCTTCTTC
TTCCTCCTCCTTGTCTTCTTCCGACCGCCGCGGCGAGGGAGAGGTCAAGT
ACGACGGCCGGGCCGAGTTCGTCGCCTACGGGTGGTCAACTGGCTGGCAA
TTCGTGCGATCCATGCTGACGAACGAGCTCACTCGTGTCCTGGAGCTCTA
CGTCGCGCCGCGGTTCGTCTCTCGCGAGGTGCTCGACAAGCTCACGAAGG
TGCGTTCTTTGGTAGCCGCGGTCATGCAATGGCGGCGTTGGTGGCGGTGG
CGGCGGTGGCGGTGGTGGCAGCAATGGTGACGGTGACGGCACCGGCGCAG
CGCGCTGTGGCAGCGGCAGCGGTTTTGGCACCGTCAGCCTTGGCCGCGGC
GGCGGTGGCGTTGACGGCAGCTCTTGCTGTGGGTGGCGGCGGCGGTGGTG
GTGGTGGCGGCTTTGACGAGCAGCGGCTTTGGTGGCGGCAGTTGCGGGTG
GTGACGGCGACGGCCTCGGGGCCAGCAATGGAAGCAACGGCAATGCAGGC
GACTGGCACCTCCATTTAGGCGGTGGCAGCAGAGGAGAATGGGAAGGCGG
AGAGCTTTTTTGGCAAGAAAGGCGGCTGGAAGGGCTGATAGAGGACTGTG
GTACTCTTTTCTTTCTGGATCTACCCGAGGACCTCTTGACATCTGCGACT
TCGTCAGTTCCTACCCAATGACTGCCGACTGCAAGCCTCCCAGCTCCTCG
GCAGTCATTGGGAAAGTAGAACGGGCGGTTCTTGCTGCGAAGGAGCGCAA
AGGGATGCAGGCGTGGCGGCTCAGCCTTTTCCAAACAAATCACTCGCATC
TTTCTGACTTCCCAAACCGACGGCTTCTCTCTGCGTTGGCAATGGTGGTA
TGATGCGGACAACGATGATGGAGCGGTGCGAACTATGGCGGCGATGGCTG
CTACTGGAACGGCATATGACAGGACTCGTACAAGGCGCTCAAACGGATGC
ACGCAGCCGGCGTCGACCAGCGGGGGGCGGCAGCGGCGATCATCCGCACC
ACGTCGTGGGGCGGCGTGCTCTATTCCTCCGCCTCCGTCATTATTGATAT
GTGCCGGGAGGCCTACACGCTCTTCCACGCAACGTATCGTTGCTTTCTAT
TTAACGTTCCGATGTGGTCTGTTTTCTGCGCCGCCTTGTCATGTCTGCAG
CAGTCCTCTCGGCAGTACGATACGTGCTCTTTCACCTCATCTTCTGCTAT
GCTTGAAGCATATGTTGCTGGTGTTTGATTTCCCCTTTTTTTGTTGATAA
ATGGGTATTGCCGGTCGTGCTGAGTTACCTCGCAAGCCTTACCGCAACCA
TGCTGTCCGCCGCCGCCACCTGTCGCTGTACGCTACCGCCGCCGCTGCCG
CTGCCAACGGCCGCCGTTCTTTCCTGCCGCCGCCACCGCCGCAAACGACG
ACCAGGGGCAGATGGGCGCTTCCCAGGGACCCAGCGTGGAAGCGCCGCCT
CGCCCGGCGGTTCGCCTACTACTTCTACGTCCACTTCGCGAGCCTCGGAC
TGGGCGCCGTGGGCACTGGCTTCGTGACGCTGCTTCTCGGGCCCAGCCAG
CCGGGACTGGCCATTCAGGGTGGCGGCAGCATTTTTGCCTTCGGTGCAGA
TGCGCTGCTGTCGCTGCCCAAGCTCCTGCGGGATCGGGAGCTGCCGCCAT
TTCCGCCATTGCCACCATCGCCGCCGCAGCAGCAAAAGCGGCTGGGGCCC
GGCCGAAGGTAGCCGACCGGCGGGAGGCGGGCAGCGCGTCGCTACCCAGA
CTAAAACCCGAGGTCTTCGCAGCCGGGAGGTGGTGGCAGCCGCAGGGCAG
GCGACTGGACCGGACGGCCGCTTCAGCATCGCCTGTGCTCCCTGCACTTC
CCTGGGAAGCGTGCATTGGGGGTTTACCATTGCAGGGTTGTCCGCCGATG
CATCACTCTGGCGCGGCGCGGTGGATGGATAGCCGGCATCGCGGCCAGAG
GCGGCTGGGAGGTGTCGCCAGCCGTGAAAGGCCAAGCGGGCTACACCCCG
GCTGCAGTGAATTGCAACGCCGGTGGCTGTGGTCGTTGGTGCCATTCCCG
CGTCGTTCGGACTGGTTGCGAAAGGCTGGCTGAAAGGCGCCGTTTCAGTC
TGGTGTCTGGCGCACTATGCAGGCGACACCGGCCCACCTTCCTGTCGCCT
ATGGCCTGCAGCCACTGAACTTTAGAAGGAGCGAGGTGACACTGCTTTAC
ACTGGACTCGATGTCGAAATTAAGAAGACTATAACATTCTTTCGGAAGAA
AGAAGAAAGTAAAAGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1623:2271..4638-

>mRNA_P-wetherbeei_contig1623.3.2 ID=mRNA_P-wetherbeei_contig1623.3.2|Name=mRNA_P-wetherbeei_contig1623.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1053bp|location=Sequence derived from alignment at P-wetherbeei_contig1623:2271..4638- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCGGACAAGAAAAAAGGAGGAATTTTCCTCTTCTTCTTCCTCCTC
CTTGTCTTCTTCCGACCGCCGCGGCGAGGGAGAGGTCAAGTACGACGGCC
GGGCCGAGTTCGTCGCCTACGGGTGGTCAACTGGCTGGCAATTCGTGCGA
TCCATGCTGACGAACGAGCTCACTCGTGTCCTGGAGCTCTACGTCGCGCC
GCGGTTCGTCTCTCGCGAGGTGCTCGACAAGCTCACGAAGGACTCGTACA
AGGCGCTCAAACGGATGCACGCAGCCGGCGTCGACCAGCGGGGGGCGGCA
GCGGCGATCATCCGCACCACGTCGTGGGGCGGCGTGCTCTATTCCTCCGC
CTCCGTCATTATTGACGACGACCAGGGGCAGATGGGCGCTTCCCAGGGAC
CCAGCGTGGAAGCGCCGCCTCGCCCGGCGGTTCGCCTACTACTTCTACGT
CCACTTCGCGAGCCTCGGACTGGGCGCCGTGGGCACTGGCTTCGTGACGC
TGCTTCTCGGGCCCAGCCAGCCGGGACTGGCCATTCAGGGTGGCGGCAGC
ATTTTTGCCTTCGGTGCAGATGCGCTGCTGTCGCTGCCCAAGCTCCTGCG
GGATCGGGAGCTGCCGCCATTTCCGCCATTGCCACCATCGCCGCCGCAGC
AGCAAAAGCGGCTGGGGCCCGGCCGAAGGTAGCCGACCGGCGGGAGGCGG
GCAGCGCGTCGCTACCCAGACTAAAACCCGAGGTCTTCGCAGCCGGGAGG
TGGTGGCAGCCGCAGGGCAGGCGACTGGACCGGACGGCCGCTTCAGCATC
GCCTGTGCTCCCTGCACTTCCCTGGGAAGCGTGCATTGGGGGTTTACCAT
TGCAGGGTTGTCCGCCGATGCATCACTCTGGCGCGGCGCGGTGGATGGAT
AGCCGGCATCGCGGCCAGAGGCGGCTGGGAGGTGTCGCCAGCCGTGAAAG
GCCAAGCGGGCTACACCCCGGCTGCAGTGAATTGCAACGCCGGTGGCTGT
GGTCGTTGGTGCCATTCCCGCGTCGTTCGGACTGGTTGCGAAAGGCTGGC
TGA
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