mRNA_P-wetherbeei_contig16223.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16223.1.3
Unique NamemRNA_P-wetherbeei_contig16223.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16223.1.3 vs. uniprot
Match: A0A7S2V3F7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3F7_9STRA)

HSP 1 Score: 161 bits (407), Expect = 5.940e-47
Identity = 78/124 (62.90%), Postives = 103/124 (83.06%), Query Frame = 1
Query:   22 VKINELRPN-SRGNNMVVHVLRNEIVVHKTRVDGSEVRIAEVLLADETGAVLLRGRNEQIDVLRPGSVVVVRNAAVEMFKSYIRLVVTKWGKISPHPDGVESTGPAPPAANVDNNISNVEYQLV 390
            VKI  L+P  + G+N+V  V++ E+V+ K R+DGS  RIAEVLLADETG +++R RNEQID++ PG+VVVVRNA++EMFK Y+RLVVTKWGKI+ HPDG+EST PAP + N +NN+S+VEY+LV
Sbjct:   17 VKIGTLQPGPTHGHNLVGWVVKTEVVLEKPRIDGSSTRIAEVLLADETGCLVVRARNEQIDMMSPGNVVVVRNASIEMFKGYMRLVVTKWGKITAHPDGIESTPPAPSSTNTENNLSSVEYELV 140          
BLAST of mRNA_P-wetherbeei_contig16223.1.3 vs. uniprot
Match: A0A484EGD7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGD7_BRELC)

HSP 1 Score: 139 bits (351), Expect = 1.700e-38
Identity = 69/128 (53.91%), Postives = 93/128 (72.66%), Query Frame = 1
Query:   19 DVKINELRPNSRGNNMVVHVLRNEIVVHKTRVDGSEVRIAEVLLADETGAVLLRGRNEQIDVLRPGSVVVVRNAAVEMFKSYIRLVVTKWGKISPHPDGVESTGPAPPAANVDNNISNVEYQLVPAQS 402
            DVK  +L P S+G+N+V+ V+ +   V K R DG+  RIAEV+LADETG V    RN+QID+L+ G VVV+RN+  ++F  ++RL VT+WGK+S HPDG+ ST P PP+ N DNNIS VEY+LV A +
Sbjct:   26 DVKTTDLTPGSQGHNLVLQVVSSAPTVEKKRFDGTISRIAEVVLADETGCVTFTARNDQIDMLKDGQVVVLRNSNADIFNGFMRLNVTQWGKLSLHPDGIASTPPPPPSVNTDNNISAVEYELVTADT 153          
BLAST of mRNA_P-wetherbeei_contig16223.1.3 vs. uniprot
Match: D0NL22_PHYIT (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=D0NL22_PHYIT)

HSP 1 Score: 138 bits (347), Expect = 5.030e-38
Identity = 70/125 (56.00%), Postives = 91/125 (72.80%), Query Frame = 1
Query:   16 TDVKINELRPNSRGNNMVVHVLRNEIVVHKTRVDGSEVRIAEVLLADETGAVLLRGRNEQIDVLRPGSVVVVRNAAVEMFKSYIRLVVTKWGKISPHPDGVESTGPAPPAANVDNNISNVEYQLV 390
            T VK+ +L P S+G+N+V+ V+     V K R DG+  RIAE +LADETG V L  RN+QID+L+ G  VVVRN+  ++F  ++RL VT+WGK+SPHPDGV ST PAPP  N D+NIS VEY+LV
Sbjct:   15 TYVKVQDLTPGSQGHNLVLQVVSIAPTVEKKRYDGTISRIAEAVLADETGCVTLTARNDQIDMLKEGLDVVVRNSNADIFNGFMRLNVTQWGKLSPHPDGVASTPPAPPKVNTDSNISAVEYELV 139          
BLAST of mRNA_P-wetherbeei_contig16223.1.3 vs. uniprot
Match: A0A662WJV9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WJV9_9STRA)

HSP 1 Score: 137 bits (345), Expect = 7.910e-38
Identity = 70/130 (53.85%), Postives = 90/130 (69.23%), Query Frame = 1
Query:    1 PILSRTDVKINELRPNSRGNNMVVHVLRNEIVVHKTRVDGSEVRIAEVLLADETGAVLLRGRNEQIDVLRPGSVVVVRNAAVEMFKSYIRLVVTKWGKISPHPDGVESTGPAPPAANVDNNISNVEYQLV 390
            P L   DVK+ +L P S+G+N+V+ V+     V K R DGS  RIAE +LADETG V+   RN QID+L    VVVVRN+  ++F  ++RL VT+WGK+S HPDGVEST P PP+ N  NNIS +EY+LV
Sbjct:    1 PRLCSVDVKVQDLTPGSQGHNLVLQVVSIAPTVEKKRYDGSTSRIAEAVLADETGCVIFTARNGQIDLLEEQLVVVVRNSNADIFNGFMRLNVTQWGKLSLHPDGVESTPPPPPSVNTGNNISAIEYELV 130          
BLAST of mRNA_P-wetherbeei_contig16223.1.3 vs. uniprot
Match: A0A024TNP1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TNP1_9STRA)

HSP 1 Score: 135 bits (340), Expect = 7.040e-37
Identity = 69/150 (46.00%), Postives = 98/150 (65.33%), Query Frame = 1
Query:    1 PILSRTDVKINELRPNSRGNNMVVHVLRNEIVVHKTRVDGSEVRIAEVLLADETGAVLLRGRNEQIDVLRPGSVVVVRNAAVEMFKSYIRLVVTKWGKISPHPDGVESTGPAPPAANVDNNISNVEYQLVPAQSGSGAPTDRNVHEEDDG 450
            P+   T VK+ +L P ++G+ +VV V   +    KTR+DGS VRI E  + DETG V+L  RNEQI ++  G V+V+RNA+ +++  ++RL VT+WGKI+PHPDG+ ST  AP + N  NN+S +EY+LVPA+           HEE DG
Sbjct:    9 PLRRATYVKVKDLAPATKGHCLVVQVHAIDPATEKTRIDGSIVRIVEATVGDETGTVVLNARNEQIKLVEVGRVLVIRNASADVYNGFLRLNVTQWGKIAPHPDGIASTPHAPQSVNTSNNVSGIEYELVPAEDVD--------HEEGDG 150          
BLAST of mRNA_P-wetherbeei_contig16223.1.3 vs. uniprot
Match: A0A3R7G879_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G879_9STRA)

HSP 1 Score: 139 bits (351), Expect = 7.780e-37
Identity = 70/123 (56.91%), Postives = 91/123 (73.98%), Query Frame = 1
Query:   22 VKINELRPNSRGNNMVVHVLRNEIVVHKTRVDGSEVRIAEVLLADETGAVLLRGRNEQIDVLRPGSVVVVRNAAVEMFKSYIRLVVTKWGKISPHPDGVESTGPAPPAANVDNNISNVEYQLV 390
            VK+ +L P S+G+N+V+ V+     V K R DGS  RIAE +LADETG V    RN+QID+L+ G VVVVRN+  ++F  ++RL VT+WGK+S HPDGVEST PAPP+ N DNNIS +EY+LV
Sbjct:  168 VKVQDLTPGSQGHNLVLQVVSIAATVEKKRYDGSISRIAESVLADETGCVTFTARNDQIDMLKEGLVVVVRNSNADIFNGFMRLNVTQWGKLSLHPDGVESTPPAPPSVNSDNNISAIEYELV 290          
BLAST of mRNA_P-wetherbeei_contig16223.1.3 vs. uniprot
Match: A0A0P1AVD7_PLAHL (RFA1, RPA1, rpa n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AVD7_PLAHL)

HSP 1 Score: 135 bits (339), Expect = 8.080e-37
Identity = 67/123 (54.47%), Postives = 88/123 (71.54%), Query Frame = 1
Query:   22 VKINELRPNSRGNNMVVHVLRNEIVVHKTRVDGSEVRIAEVLLADETGAVLLRGRNEQIDVLRPGSVVVVRNAAVEMFKSYIRLVVTKWGKISPHPDGVESTGPAPPAANVDNNISNVEYQLV 390
            VK  +L P S G+N+V+ V+     V K R DGS  RIAEV+LADETG V    RN+QID+L+ G VVV+RN+  +++  ++RL VT WGK+S HPDG+EST P PP+ N DNNIS +EY+LV
Sbjct:   17 VKAKDLTPGSHGHNLVLQVVSVAATVEKKRYDGSVSRIAEVVLADETGCVTFTARNDQIDMLKEGLVVVLRNSNADIYNGFMRLNVTLWGKLSLHPDGIESTPPPPPSINTDNNISAIEYELV 139          
BLAST of mRNA_P-wetherbeei_contig16223.1.3 vs. uniprot
Match: A0A3M6VUP1_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VUP1_9STRA)

HSP 1 Score: 133 bits (334), Expect = 4.710e-36
Identity = 66/125 (52.80%), Postives = 90/125 (72.00%), Query Frame = 1
Query:   16 TDVKINELRPNSRGNNMVVHVLRNEIVVHKTRVDGSEVRIAEVLLADETGAVLLRGRNEQIDVLRPGSVVVVRNAAVEMFKSYIRLVVTKWGKISPHPDGVESTGPAPPAANVDNNISNVEYQLV 390
            T VK+ +L P S+G+N+V+ V+    VV K R DG+  RIAE +LADETG V    RN+QIDVL+ G V+V+RN   ++F  ++RL VT+WGK+S HPDGV ST P PP+ N +NN+S +EY+LV
Sbjct:   16 TYVKVQDLTPGSQGHNLVLQVVSVAPVVEKKRYDGAVSRIAEAVLADETGCVTFTARNDQIDVLKEGLVLVMRNTNADIFNGFMRLNVTQWGKMSVHPDGVASTPPPPPSINTENNMSAIEYELV 140          
BLAST of mRNA_P-wetherbeei_contig16223.1.3 vs. uniprot
Match: A0A3F2RK22_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RK22_9STRA)

HSP 1 Score: 139 bits (351), Expect = 5.630e-36
Identity = 71/125 (56.80%), Postives = 92/125 (73.60%), Query Frame = 1
Query:   16 TDVKINELRPNSRGNNMVVHVLRNEIVVHKTRVDGSEVRIAEVLLADETGAVLLRGRNEQIDVLRPGSVVVVRNAAVEMFKSYIRLVVTKWGKISPHPDGVESTGPAPPAANVDNNISNVEYQLV 390
            T VK+ +L P S+G+N+V+ V+     V K R DGS  RIAE +LADETG V    RN+QID+L+ G VVVVRN+  ++F  ++RL VT+WGK+S HPDGVEST PAPP+ N DNNIS +EY+LV
Sbjct:  260 TYVKVQDLTPGSQGHNLVLQVVSIAATVEKKRYDGSISRIAESVLADETGYVTFTARNDQIDMLKEGLVVVVRNSNADIFNGFMRLNVTQWGKLSLHPDGVESTPPAPPSVNSDNNISAIEYELV 384          
BLAST of mRNA_P-wetherbeei_contig16223.1.3 vs. uniprot
Match: A0A5D6XHX4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHX4_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.500e-35
Identity = 64/125 (51.20%), Postives = 88/125 (70.40%), Query Frame = 1
Query:   16 TDVKINELRPNSRGNNMVVHVLRNEIVVHKTRVDGSEVRIAEVLLADETGAVLLRGRNEQIDVLRPGSVVVVRNAAVEMFKSYIRLVVTKWGKISPHPDGVESTGPAPPAANVDNNISNVEYQLV 390
            T  K+ +L P S+G+N+V+ V+       K R DG+  RIAE +LADETG V    RNEQID+L  G+V+VVRN+  ++F  ++RL VT+WGK++PHPDG+ ST  AP   N DNN+S+VEY+LV
Sbjct:   19 TYAKVKDLTPGSQGHNLVLRVVNVAPTTEKKRYDGTVSRIAEAMLADETGCVTFTARNEQIDLLHKGAVLVVRNSNADIFNGFMRLNVTQWGKLAPHPDGIASTPKAPVDTNTDNNVSSVEYELV 143          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16223.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V3F7_9STRA5.940e-4762.90Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A484EGD7_BRELC1.700e-3853.91Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
D0NL22_PHYIT5.030e-3856.00Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]
A0A662WJV9_9STRA7.910e-3853.85Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A024TNP1_9STRA7.040e-3746.00Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A3R7G879_9STRA7.780e-3756.91Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A0P1AVD7_PLAHL8.080e-3754.47RFA1, RPA1, rpa n=1 Tax=Plasmopara halstedii TaxID... [more]
A0A3M6VUP1_9STRA4.710e-3652.80Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A3F2RK22_9STRA5.630e-3656.80Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A5D6XHX4_9STRA1.500e-3551.20Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16223contigP-wetherbeei_contig16223:2..1516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog325452.fgenesh_scip_prom.46568.5131
Model size657
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons5
Evalue6.59e-31
EggNOG OGs2CY2W@1|root,2S1JY@2759|Eukaryota,3QCM6@4776|Peronosporales
Cds size444
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16223.1.3prot_P-wetherbeei_contig16223.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16223 152..1453 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186080.5253606-UTR-P-wetherbeei_contig16223:1..1511683186080.5253606-UTR-P-wetherbeei_contig16223:1..151Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16223 2..151 -
1683186080.573954-UTR-P-wetherbeei_contig16223:1453..15161683186080.573954-UTR-P-wetherbeei_contig16223:1453..1516Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16223 1454..1516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186080.533866-CDS-P-wetherbeei_contig16223:151..2851683186080.533866-CDS-P-wetherbeei_contig16223:151..285Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16223 152..285 -
1683186080.5416546-CDS-P-wetherbeei_contig16223:501..5891683186080.5416546-CDS-P-wetherbeei_contig16223:501..589Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16223 502..589 -
1683186080.5497155-CDS-P-wetherbeei_contig16223:774..8691683186080.5497155-CDS-P-wetherbeei_contig16223:774..869Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16223 775..869 -
1683186080.5576444-CDS-P-wetherbeei_contig16223:1200..12491683186080.5576444-CDS-P-wetherbeei_contig16223:1200..1249Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16223 1201..1249 -
1683186080.5657063-CDS-P-wetherbeei_contig16223:1375..14531683186080.5657063-CDS-P-wetherbeei_contig16223:1375..1453Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16223 1376..1453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16223.1.3

>prot_P-wetherbeei_contig16223.1.3 ID=prot_P-wetherbeei_contig16223.1.3|Name=mRNA_P-wetherbeei_contig16223.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
MVVHVLRNEIVVHKTRVDGSEVRIAEVLLADETGAVLLRGRNEQIDVLRP
GSVVVVRNAAVEMFKSYIRLVVTKWGKISPHPDGVESTGPAPPAANVDNN
ISNVEYQLVPAQSGSGAPTDRNVHEEDDGGDGMDDDGATEAAAPAEP*
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mRNA from alignment at P-wetherbeei_contig16223:2..1516-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16223.1.3 ID=mRNA_P-wetherbeei_contig16223.1.3|Name=mRNA_P-wetherbeei_contig16223.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1515bp|location=Sequence derived from alignment at P-wetherbeei_contig16223:2..1516- (Phaeothamnion wetherbeei SAG_119_79)
CCGATCTTATCGCGCACAGATGTGAAGATCAACGAGTTACGGCCAAATTC CCGAGGGAACAACATGGTCGTGCATGTTTTACGCAACGAAATCGTAGTGC ACAAGACCCGAGTGGACGGATCGGAAGTGCGGATCGCGGAGGTGAGAAAA GGGAGCGACGTGACGTAGTACACTCCTAACGCGCTACCGGTGGCGCCATC TTGACGCACATCTTTCTTTTTAGTGTGGACATCCTGCCTCTCGCGCTCTG TCCTCCTGTGTCACTAGGTGCTTCTGGCGGACGAAACGGGCGCCGTCTTG CTGCGAGGAAGAAATGGTGAGTCTGGAAAGAGGGCAGCCGGAGTTGCTGC ATCGCGGCTATGCTGCCTCTGGAACGTAGTAGGCAGTTGCATCTGGCATG GCATTTCCTGTGATGATTGCTTTTTTTACATACTGGAATTACCGTCTGAA TCTTGTTGACGAGATCAAAGCGGCTGTATCTGAGGGACCGTGCCATTTGC AACTCTAGTACACCGGAAAGCTTAAATTCCTCCTTCGTCTCGCATGGTCG GATGATTGAAGGTTCCAACGGGCCACCGCCATGATTTGCGCTGTCCTTTG CTTTGGTCGAATTCCTTCTCCTCGACGCTTTCGCTCTTTCCTTGCAGAAC AGATTGATGTTTTGCGGCCGGGGAGTGTCGTCGTCGTGAGAAACGCCGCG GTGGAGATGTTCAAGTCCTACATCCGCCTCGTCGTAACCAAGGTACGATG CCACTGCGCGATGAAAGAAGCCTTTCTTTTGCTTTTGTGCGGCTCGCTAA TTAATATGGCGGTTGGCGCCAGCGCTCTTTAGTAGCACGGTCGCGCCTTT CCAGAACGCTTTGCAAACGCTGCATTCCTGAGGTAATCGCCAGTGGTGCC TCCCGCCGCCACTACGCCAATGCGCAGTGGGGCAAGATCTCGCCGCATCC CGACGGTGTCGAGTCCACCGGCCCGGCCCCGCCAGCTGCCAACGTTGACA ACAACATCTCAAACGGTAAGAAGAACGGGAGAGGGCTGTGGACACAGCTT CCCATGGAACTCTTGTTTCCTATTTCGGAAGAAATCTGGGCATCCTGAGG TAGAGTTCGATAGATTTGATCGCTGCTTCTAGCTTTAGCATCGCCGCAGA CGGTGGATCTTTGCTTTCATCGATACTTCTCTCATTGTCTCGTCATTTGC GCTTCCCGTTTCCCCGAAAACAAACATGCAGTCGAATATCAACTCGTGCC GGCCCAGTCTGGCTCTGGAGCGCCAACGGACCGAAATGTGCACGAGGAAG ATGACGGAGGCGACGGCATGGATGACGATGGCGCAACGGAGGCGGCCGCC CCTGCTGAGCCGTAGTCGGTGCTATATTGGGGACACGGAGCGCCATCATG GGCAGCACGGCATGTATACATACAGAAAGCGCGGTTCACATGGGAAAGAA GGCTAGGTAAGCTGAAAGTGGGCGACATGGTTAGTTATAGATACCAGAAA GAGTGGAACGACAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16223:2..1516-

>mRNA_P-wetherbeei_contig16223.1.3 ID=mRNA_P-wetherbeei_contig16223.1.3|Name=mRNA_P-wetherbeei_contig16223.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig16223:2..1516- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGTGCATGTTTTACGCAACGAAATCGTAGTGCACAAGACCCGAGT
GGACGGATCGGAAGTGCGGATCGCGGAGGTGCTTCTGGCGGACGAAACGG
GCGCCGTCTTGCTGCGAGGAAGAAATGAACAGATTGATGTTTTGCGGCCG
GGGAGTGTCGTCGTCGTGAGAAACGCCGCGGTGGAGATGTTCAAGTCCTA
CATCCGCCTCGTCGTAACCAAGTGGGGCAAGATCTCGCCGCATCCCGACG
GTGTCGAGTCCACCGGCCCGGCCCCGCCAGCTGCCAACGTTGACAACAAC
ATCTCAAACGTCGAATATCAACTCGTGCCGGCCCAGTCTGGCTCTGGAGC
GCCAACGGACCGAAATGTGCACGAGGAAGATGACGGAGGCGACGGCATGG
ATGACGATGGCGCAACGGAGGCGGCCGCCCCTGCTGAGCCGTAG
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