mRNA_P-wetherbeei_contig16205.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16205.2.1
Unique NamemRNA_P-wetherbeei_contig16205.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16205.2.1 vs. uniprot
Match: A0A015L5N4_RHIIW (DUF659 domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015L5N4_RHIIW)

HSP 1 Score: 58.5 bits (140), Expect = 1.250e-5
Identity = 46/186 (24.73%), Postives = 80/186 (43.01%), Query Frame = 3 
Query:  612 DTMHPPFAACCCFAELFAKAIDEIGPEKVAAICTDGAAAMTKGRRDLVSQPKYRHILDLRCQMHAFNLLYGSFFGHPVPKSIMRTAQQIVMFVRASHKVGELVRQKAREMGKKVAALKTSNKTRFTSGEASLSSIAELVDVLQSVYVDAPALFQHKPELVAVLSDRWHD--FWRQLREFVKLLLPI 1163
            D  + P        +   K +D IGPE++AA+ +D A      +  ++   KY HIL++RC  H  NL+      H      +R    +  +   SH   + ++   + +  K   LK+  KTR+++    +SSI  L      V      L +H+ ++   + D  HD  F+   R    +L P+
Sbjct:   28 DYSNVPHHTGAFLGDEIIKIVDNIGPERLAAVVSDNAPDARVAQ--IILCAKYPHILNIRCMAHCINLITKDLCKHSFVVDTIRKVGIVHQYFTMSHAPYQFLKDSVKILQIKGEGLKSYTKTRWSTMWDCVSSIVRLELAFARV------LSEHENDIKNRVKDILHDRNFYENCRIIASILHPL 205
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16205.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A015L5N4_RHIIW1.250e-524.73DUF659 domain-containing protein n=1 Tax=Rhizophag... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16205contigP-wetherbeei_contig16205:160..1425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog6087.XP_004207781.1
PFAMsDUF659,Dimer_Tnp_hAT
Model size1266
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.5e-08
EggNOG OGs2CU6P@1|root,2RJJK@2759|Eukaryota,3A09E@33154|Opisthokonta,3BPSP@33208|Metazoa
DescriptionProtein of unknown function (DUF 659)
Cds size570
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186080.1480498-UTR-P-wetherbeei_contig16205:159..2381683186080.1480498-UTR-P-wetherbeei_contig16205:159..238Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16205 160..238 -
1683186080.1714232-UTR-P-wetherbeei_contig16205:808..14251683186080.1714232-UTR-P-wetherbeei_contig16205:808..1425Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16205 809..1425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186080.159547-CDS-P-wetherbeei_contig16205:238..8081683186080.159547-CDS-P-wetherbeei_contig16205:238..808Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16205 239..808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16205.2.1prot_P-wetherbeei_contig16205.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16205 239..808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16205.2.1

>prot_P-wetherbeei_contig16205.2.1 ID=prot_P-wetherbeei_contig16205.2.1|Name=mRNA_P-wetherbeei_contig16205.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=190bp
MHPPFAACCCFAELFAKAIDEIGPEKVAAICTDGAAAMTKGRRDLVSQPK
YRHILDLRCQMHAFNLLYGSFFGHPVPKSIMRTAQQIVMFVRASHKVGEL
VRQKAREMGKKVAALKTSNKTRFTSGEASLSSIAELVDVLQSVYVDAPAL
FQHKPELVAVLSDRWHDFWRQLREFVKLLLPISSQGRSS*
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mRNA from alignment at P-wetherbeei_contig16205:160..1425-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16205.2.1 ID=mRNA_P-wetherbeei_contig16205.2.1|Name=mRNA_P-wetherbeei_contig16205.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1266bp|location=Sequence derived from alignment at P-wetherbeei_contig16205:160..1425- (Phaeothamnion wetherbeei SAG_119_79)
CAGCACTGCGGGAGAACTACCTCATGAAGGAGTGGATGCGCGTGATTAGG
GCCACGCATGCCGCCCTTGCAGAGTGCGAGAGCGTCACCATCATGCTCGA
CGGCTGGACGGATCGCCAGGGCAAGTCTGTCGTCGCTGTGCTCGCCGTGA
CGGCACAGCGCAAGACGCACCTGCTAGATGTGATGGATTGCTCTGCCGAC
AGTCATACCGCTGCATACAACACAGGTAAAATATCAAAACGCACTCCTCA
CGAACCGGGCGTGGCACTTATTTTTAATTTCTGCGAATGGGGGTGCGCAC
ACTATCATTTGCCACTTGGGGGGGCGGCCGGTTAGCAGCACATCAGGAGG
CATATCTGTGTTCCCGTTGATATATTCCTTCCCCTCCCTCCCTCACGAAA
CGTGCCTGGCTTCAGCGCGCCTGTATTGTTCGCGAGACAACACGTCCCTG
CCAATCCGTCGCTCCTGTTTTGCCTTTCCTTGGCGAAATTGTCGCTCCGC
GCTCTCTTCTCCGACAAGTCCGCCGCCGCCCCGCTCCCTGGCCTCTGTCT
CATTTTTCCTCTTCCAAATCTACTAGGCAAGGGCGATAAAATCAAGGGGT
GAAGAGGGGACGACACCATGCACCCGCCCTTTGCTGCCTGCTGCTGTTTT
GCAGAGCTTTTCGCTAAGGCAATTGACGAGATCGGCCCGGAAAAGGTTGC
GGCCATTTGCACCGACGGTGCGGCAGCCATGACTAAGGGCCGCCGGGATC
TAGTGTCGCAGCCTAAGTACCGCCACATCCTGGATCTCCGCTGCCAGATG
CATGCCTTCAATCTGCTGTACGGCTCATTCTTCGGGCATCCCGTCCCCAA
GAGCATCATGCGAACCGCCCAGCAGATCGTCATGTTTGTGCGTGCCTCGC
ACAAGGTCGGCGAGCTCGTGCGCCAGAAAGCGAGGGAGATGGGCAAGAAG
GTCGCTGCCCTCAAGACATCCAACAAGACACGGTTCACCTCCGGTGAGGC
GAGTCTTTCTTCCATTGCAGAGCTCGTGGACGTGCTGCAGAGCGTCTATG
TGGACGCGCCTGCTCTCTTCCAGCATAAGCCGGAGCTCGTCGCTGTGCTG
TCCGACCGCTGGCATGACTTCTGGCGTCAGCTCCGTGAATTTGTCAAGCT
GCTGTTGCCCATTAGCAGCCAAGGTCGCTCATCATGATGGTGCAGTCCGA
TGAGTGCACGCTCGCCGACATCACGCGCTTCTGGCTCTACCTCGCGAAGG
ACCTGGTGGGCGTTAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16205:160..1425-

>mRNA_P-wetherbeei_contig16205.2.1 ID=mRNA_P-wetherbeei_contig16205.2.1|Name=mRNA_P-wetherbeei_contig16205.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig16205:160..1425- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACCCGCCCTTTGCTGCCTGCTGCTGTTTTGCAGAGCTTTTCGCTAA
GGCAATTGACGAGATCGGCCCGGAAAAGGTTGCGGCCATTTGCACCGACG
GTGCGGCAGCCATGACTAAGGGCCGCCGGGATCTAGTGTCGCAGCCTAAG
TACCGCCACATCCTGGATCTCCGCTGCCAGATGCATGCCTTCAATCTGCT
GTACGGCTCATTCTTCGGGCATCCCGTCCCCAAGAGCATCATGCGAACCG
CCCAGCAGATCGTCATGTTTGTGCGTGCCTCGCACAAGGTCGGCGAGCTC
GTGCGCCAGAAAGCGAGGGAGATGGGCAAGAAGGTCGCTGCCCTCAAGAC
ATCCAACAAGACACGGTTCACCTCCGGTGAGGCGAGTCTTTCTTCCATTG
CAGAGCTCGTGGACGTGCTGCAGAGCGTCTATGTGGACGCGCCTGCTCTC
TTCCAGCATAAGCCGGAGCTCGTCGCTGTGCTGTCCGACCGCTGGCATGA
CTTCTGGCGTCAGCTCCGTGAATTTGTCAAGCTGCTGTTGCCCATTAGCA
GCCAAGGTCGCTCATCATGA
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