mRNA_P-wetherbeei_contig1620.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1620.1.2
Unique NamemRNA_P-wetherbeei_contig1620.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1620.1.2 vs. uniprot
Match: A0A7S3L2F1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L2F1_9STRA)

HSP 1 Score: 174 bits (440), Expect = 2.440e-44
Identity = 101/244 (41.39%), Postives = 145/244 (59.43%), Query Frame = 1
Query:  553 EDPWRELAALQNLNADGGHPHVEQLVEAIEDDEFLFKITPWCVDGEAFELIP----LPEAQARRLIRQVLSALSFMHQRNVFHRDVSLENILIERSANGDQSARLGDMGMALNIPLDPQTG--------QRLPIAPQGRCGKPACISPELHGNAQPFDAVAADVWSSGSVLYMLLLGLSPWSCIG--DSLFQVISVEGRLAPLLRTWGLSGRISPEAVDLLQCMLRADPAQRLATVEDVLAHPW 1242
            EDP +E+AA+Q+++ DG H HV  + + +ED+E+L    P+   G+ F  +      PE  AR   +Q+LS L+ + +  V HRD+SLENIL++      + + + D+GM L +P D   G         R  I PQ  CGKP  ISPE+  + +PFD  A D+W++G +L+++L+GL PW      D  F+++ V G L  +LR+W     ISPEAVDLLQ MLR DP QRL+ VE V  HPW
Sbjct:  131 EDPQKEVAAMQHVSRDGVHEHVMGVFDVLEDEEYLLMFMPFASSGDLFGFVQQAGRFPETMARFWFKQILSGLTHLQRLGVCHRDMSLENILVDEY----RKSIIIDLGMCLRVPYDNDGGVIDVSGGTMRRLILPQIPCGKPNYISPEILKSEEPFDGFAIDLWATGVILFIMLVGLPPWEFAREEDPRFKMV-VRGGLGRMLRSW--DREISPEAVDLLQKMLREDPRQRLSLVE-VQDHPW 366          
BLAST of mRNA_P-wetherbeei_contig1620.1.2 vs. uniprot
Match: D7FTS8_ECTSI (SOS2 (SALT OVERLY SENSITIVE 2) kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTS8_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 3.200e-44
Identity = 133/352 (37.78%), Postives = 185/352 (52.56%), Query Frame = 1
Query:  223 FPPATVGRASRLCHSP-LVLWSQSSGRMFYADPRNTKSSR-CQFEGVVAQCREVLLEPESQDNATAAIARSPCGKVFVLRRESPP-FALKVLRKDIVEAKAVRQGRVLGQLSGEDPWRELAALQNLNADGGHPHVEQLVEAIEDDEFLFKITPWCVDGEAFELIP----LPEAQARRLIRQVLSALSFMHQRNVFHRDVSLENILIERSANGDQSARLGDMGMALNIPLDPQTGQRLPIAPQGRCGKPACISPELHGNA--QPFDAVAADVWSSGSVLYMLLLGLSPWSCI---GDSLFQVISVEGRLAPLLRTWGLSGRISPEAVDLLQCMLRADPAQRLATVEDVLAHPW 1242
            FP  T  +A ++  +    L SQ++GR +    R   SSR CQF        EVL   E  D   AA               SP  FA+K L  D +      QGR       EDP RE+AALQ L++   HP+V    EA+ D + ++ +TP+   GE F+ +       E +AR L RQVL AL  +    V HRDVSLEN+L++       + +L D G+AL IP  P  G R+ + PQG CGKP  I+PE+  ++    FD  A DVW+ G +L+++L G+ P+       D   Q+++VE RL  LL  WG+S  +SPEA  L+Q  LR  PA+R  +VE++L HPW
Sbjct:   72 FPMPTFSKALKVMENESYTLRSQATGRRW----RAVSSSRECQFG-------EVLRAVEVTDEEAAA--------------SSPAYFAIKELNLDKLREV---QGRTY-----EDPLREVAALQFLSS---HPNVLPCTEALWDSDSIYIVTPFYSGGEVFDALTDRGRYEEGEARPLFRQVLHALRHLKIHGVCHRDVSLENLLLDEG----NTVKLVDFGLALRIPQKPDGGARV-LLPQGPCGKPFYIAPEVLSSSVSSGFDGFAVDVWACGVLLFVMLTGVPPFEMALPSQDQRCQIVAVEERLVDLLSAWGIS--LSPEAAGLIQSCLRHSPAER-PSVENLLRHPW 379          
BLAST of mRNA_P-wetherbeei_contig1620.1.2 vs. uniprot
Match: W7TKV7_9STRA (Protein kinase, catalytic domain protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKV7_9STRA)

HSP 1 Score: 170 bits (431), Expect = 3.350e-43
Identity = 111/280 (39.64%), Postives = 165/280 (58.93%), Query Frame = 1
Query:  463 SPPFALKVLRKDIVEAKAVRQGRVLGQLSGEDPWRELAALQNLNADGGHPHVEQLVEAIEDDEFLFKITPWCVDGEAFELIP-----LPEAQARRLIRQVLSALSFMHQRNVFHRDVSLENILIERSANGDQSARLGDMGMALNIPL----------DPQTGQRLPIAPQGRCGKPACISPELHGNAQPFDAVAADVWSSGSVLYMLLLGLSPWS--CIGDSLFQVISVEGRLAPLLRTWGLSGRISPEAVDLLQCMLRADPAQRLATVEDVLAHPWFAG 1251
            S P A+K + K  +E     +GR  G+L  E+P  ELAALQ + A GGH HV++L+E +EDDE ++ ++P+   GE F +I      LPEA+AR    Q+LS L+FMH R + HRD+SLENIL++      Q   + DMGM L +PL          DP+T  R+ +  QG+CGK   + P +  + + FD  A D+W+ G +L++LL G+ P     + D  +++I   G+L  L+  W +  RIS EA  LL+ +L+A P +R A +E+V+ HPW  G
Sbjct:  116 SQPVAIKCVSKQKIE-----EGR--GRLR-ENPIDELAALQMVGAGGGHQHVQRLLECLEDDEAIYAVSPFYQGGELFAVIEARGGGLPEARARTFFSQILSGLAFMHDRRLCHRDMSLENILVD-----GQDGVIIDMGMCLRVPLPPALPPSHPDDPET-PRVLLRKQGQCGKITYMDPVVLED-KDFDGFAVDMWACGVILFILLAGVPPLELPALTDPRYRMIQA-GKLGELMDVWEM--RISREAKHLLESLLKAVPEER-AKMEEVIRHPWLTG 376          
BLAST of mRNA_P-wetherbeei_contig1620.1.2 vs. uniprot
Match: A0A4D9CSW9_9STRA (Protein kinase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSW9_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.230e-42
Identity = 112/280 (40.00%), Postives = 166/280 (59.29%), Query Frame = 1
Query:  463 SPPFALKVLRKDIVEAKAVRQGRVLGQLSGEDPWRELAALQNLNADGGHPHVEQLVEAIEDDEFLFKITPWCVDGEAFELIP-----LPEAQARRLIRQVLSALSFMHQRNVFHRDVSLENILIERSANGDQSARLGDMGMALNIPL----------DPQTGQRLPIAPQGRCGKPACISPELHGNAQPFDAVAADVWSSGSVLYMLLLGLSPWS--CIGDSLFQVISVEGRLAPLLRTWGLSGRISPEAVDLLQCMLRADPAQRLATVEDVLAHPWFAG 1251
            S P A+K + K  +E     +GR  G+L  E+P  ELAALQ + A GGH HV++L+E +EDDE ++ ++P+   GE F +I      LPEA+AR L  Q+LS L+FMH R + HRD+SLENIL++      Q   + DMGM L +PL          DP+T  R+ +  QG+CGK   + P +  + + FD  A D+W+ G +L++LL G+ P     + D  +++I   G+L  L+  W +  RIS EA  LL+ +L+A P +R A +E+V+ HPW  G
Sbjct:  239 SQPVAIKCVSKQKIE-----EGR--GRLR-ENPIDELAALQMVGAGGGHQHVQRLLECLEDDEAIYAVSPFYQGGELFAVIEARGGGLPEARARTLFSQILSGLAFMHDRRLCHRDMSLENILVD-----GQDGVIIDMGMCLRVPLLPALPPSHPDDPET-PRVLLRKQGQCGKITYMDPVVLED-KDFDGFAVDMWACGVILFILLAGVPPLELPALTDPRYRMIQA-GKLGELMDVWQM--RISREAKHLLESLLKAVPEER-AKMEEVIRHPWLTG 499          
BLAST of mRNA_P-wetherbeei_contig1620.1.2 vs. uniprot
Match: B8BR32_THAPS (Protein kinase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR32_THAPS)

HSP 1 Score: 159 bits (403), Expect = 8.170e-41
Identity = 95/247 (38.46%), Postives = 144/247 (58.30%), Query Frame = 1
Query:  553 EDPWRELAALQNLNADGGHPHVEQLVEAIEDDEFLFKITPWCVDGEAFELIP----LPEAQARRLIRQVLSALSFMHQRNVFHRDVSLENILIERSANGDQSARLGDMGMALNIPLDPQTG-----------QRLPIAPQGRCGKPACISPELHGNAQPFDAVAADVWSSGSVLYMLLLGLSP--WSCIGDSLFQVISVEGRLAPLLRTWGLSGRISPEAVDLLQCMLRADPAQRLATVEDVLAHPW 1242
            EDP +E+AA+Q + +DG  P+V    +  +D+++++   P+C  GE F  I       E  A+   RQ+L+AL  + ++ + HRD+SLENIL++++      A + DMGM L +P +  TG            R  I P G+CGKP  ISPE+  N +PFD  A D+W++G VL+++L+GL P  W+   D  ++++   G L  L++ W    +ISP A DLLQ MLR  P  RL T+ DV+ HPW
Sbjct:    7 EDPLKEVAAMQFMCSDGAKPNVLPCWDLFKDEKYIYLCMPFCSSGELFGYIERNGRFDECVAKFWFRQLLNALYHLQKKGICHRDISLENILVDQNTK----ALVIDMGMCLRVPFNSPTGCESVYDSSAGTLRKLIYPAGQCGKPNYISPEVLLNNEPFDGFAVDLWAAGIVLFIMLIGLPPFEWASNDDPRYRLVC-RGGLGQLIQQW--HRQISPLAADLLQKMLREHPTDRL-TLFDVMNHPW 245          
BLAST of mRNA_P-wetherbeei_contig1620.1.2 vs. uniprot
Match: A0A7S1CYY2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CYY2_CYCTE)

HSP 1 Score: 159 bits (402), Expect = 2.790e-40
Identity = 93/247 (37.65%), Postives = 141/247 (57.09%), Query Frame = 1
Query:  553 EDPWRELAALQNLNADGGHPHVEQLVEAIEDDEFLFKITPWCVDGEAFELIP----LPEAQARRLIRQVLSALSFMHQRNVFHRDVSLENILIERSANGDQSARLGDMGMALNIPLDPQTGQ-----------RLPIAPQGRCGKPACISPELHGNAQPFDAVAADVWSSGSVLYMLLLGLSPWSCIG--DSLFQVISVEGRLAPLLRTWGLSGRISPEAVDLLQCMLRADPAQRLATVEDVLAHPW 1242
            EDP +E+AA+Q ++ DG HPHV   ++ ++DDE+L    P+C  G+ F  +      PE  AR   RQ+L  L  + +  V HRD+SLENIL++      +++ + D+GM L +P     G            R+ I P   CGKP  ISPE+  + +PFD  A D+W+SG +L+++L+GL PW      D  ++++ V+G L  +L++W     +SP A DLLQ ML  +P +RL+  E V  HPW
Sbjct:   22 EDPQKEVAAMQFVSRDGVHPHVMGTLDVLQDDEYLLMFMPFCSSGDLFGFVQQAGRFPEPMARYWFRQILDGLCHLQKMGVCHRDMSLENILVDEY----KTSVVIDLGMCLRVPYASDDGDGAVTDVSSGNLRVLIRPLIPCGKPNYISPEILKSEEPFDGFAIDLWASGVILFIMLVGLPPWEFAREEDPRYRMV-VKGGLQRMLQSWNRP--VSPAASDLLQKMLMENPRERLSLCE-VKDHPW 260          
BLAST of mRNA_P-wetherbeei_contig1620.1.2 vs. uniprot
Match: A0A7S2P167_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P167_9STRA)

HSP 1 Score: 161 bits (408), Expect = 6.080e-40
Identity = 99/274 (36.13%), Postives = 155/274 (56.57%), Query Frame = 1
Query:  475 ALKVLRKDIVEAKAVRQGRVLGQLSGEDPWRELAALQNL-NADGGHPHVEQLVEAIEDDEFLFKITPWCVDGEAFELIP----LPEAQARRLIRQVLSALSFMHQRNVFHRDVSLENILIERSANGDQSARLGDMGMALNIPL-DPQTG----------QRLPIAPQGRCGKPACISPELHGNAQPFDAVAADVWSSGSVLYMLLLGLSPWSCIG--DSLFQVISVEGRLAPLLRTWGLSGRISPEAVDLLQCMLRADPAQRLATVEDVLAHPW 1242
            A+K++  D++        R L  +  E+P +E+AA+Q+L N     PHV   ++ + D ++L+   P+C  GE F  +      PE  AR   RQ++  +  + +  + HRD+SLEN+L++ +     +A + D+GM L IP  D  TG          +RL + PQG+CGKP  +SPE+  N++PFD    DVW+ G +L+ +L+GL PW      D  F++I+++G+L  +LR WG S  +SP A DLLQ +LRA P  RL T   ++ H W
Sbjct:  120 AVKIMDWDLI--------RKLSGVHKEEPLKEIAAMQSLRNTLDACPHVMPTLDVMTDQQYLYSFMPYCSGGELFSYVQRDGRFPEPLARFWFRQLVQGIFHLQKAGICHRDMSLENVLVDGN-----NAVVIDLGMCLRIPFSDDDTGGVTDVTAYTLRRL-MPPQGQCGKPNYMSPEVLENSEPFDGFGVDVWAVGIILFTMLVGLPPWDWATKEDLRFKMIAIDGQLGEMLRQWGRS--VSPLATDLLQGILRAHPRDRL-TFGQIMDHEW 376          
BLAST of mRNA_P-wetherbeei_contig1620.1.2 vs. uniprot
Match: A0A1Z5JLN4_FISSO (Protein kinase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLN4_FISSO)

HSP 1 Score: 160 bits (406), Expect = 1.070e-39
Identity = 98/255 (38.43%), Postives = 149/255 (58.43%), Query Frame = 1
Query:  553 EDPWRELAALQNLNADGGHPHVEQLVEAIEDDEFLFKITPWCVDGEAFELIP----LPEAQARRLIRQVLSALSFMHQRNVFHRDVSLENILIERSANGDQSARLGDMGMALNIPLDP-QTG----------QRLPIAPQGRCGKPACISPELHGNAQPFDAVAADVWSSGSVLYMLLLGLSPWSCIG--DSLFQVISVEGRLAPLLRTWGLSGRISPEAVDLLQCMLRADPAQRLATVEDVLAHPWFAGHGSNA 1266
            EDP +E++A+Q ++  G HPHV  +++ ++D+E+L    P+C  G+ F  +      PE  AR    Q+L  L+ + ++ V HRD+SLENIL++      ++A + D+GM L +P D  +TG          +RL I P   CGKP  ISPE+  +  PFD  A D+W++  +L+++L+GL PW      D  F++++  G L  +LR+W  +  ISP A DLLQ MLR DP QRL+ +E+V  HPW    G  A
Sbjct:  127 EDPIKEVSAMQYISEGGQHPHVMGVLDVLKDEEYLLLFMPFCSSGDLFGFVQQAGRFPEPMARYWFMQILEGLTHLQKKGVCHRDMSLENILVDEY----RTAVVIDLGMCLRVPYDDGETGGVADVSAGTLRRL-INPLIPCGKPNYISPEVLKSEVPFDGFAIDLWATAVMLFIMLVGLPPWEFAREEDPRFRMVA-RGGLERMLRSW--NREISPLAADLLQKMLREDPRQRLS-LEEVKVHPWVLYEGGGA 372          
BLAST of mRNA_P-wetherbeei_contig1620.1.2 vs. uniprot
Match: A0A6V2QHT5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2QHT5_9STRA)

HSP 1 Score: 160 bits (405), Expect = 2.540e-39
Identity = 104/264 (39.39%), Postives = 149/264 (56.44%), Query Frame = 1
Query:  529 RVLGQLSGEDPWRELAALQNLNADGGHPHVEQLVEAIEDDEFLFKITPWCVDGEAFELIP-----------LPEAQARRLIRQVLSALSFMHQRNVFHRDVSLENILIERSANGDQSARLGDMGMALNIPL-DPQTGQ----------RLPIAPQGRCGKPACISPELHGNAQPFDAVAADVWSSGSVLYMLLLGLSPW--SCIGDSLFQVISVEGRLAPLLRTWGLSGRISPEAVDLLQCMLRADPAQRLATVEDVLAHPWFA 1248
            R+ G+L  EDP +E+AA+Q + A  G PHV    E ++DD+FL+ I P+C  G+ F ++            +PE  AR   RQVL  +  +  R V HRD+SLENIL+    N D  A + DMGM L +P  DP   +          R  + PQG CGK   +SPE+  N   FD  A D+W++G +LY++L G  P+  + + D   Q+I+ EG L   L  WG++  +S EA DLLQ M+R +P++RL T+ +V  HPW A
Sbjct:  150 RMRGRLL-EDPVKEIAAMQLIGA--GSPHVLGSTEVLQDDDFLYSIMPYCAGGDLFGVVVNYAEENDGEGGMPEPVARYWFRQVLQGIHHLQSRGVCHRDLSLENILV----NEDNCAII-DMGMCLRVPYSDPFNAEATTDVRAGTMRRLMTPQGVCGKHNYMSPEIFQNQANFDGFAIDMWAAGVILYIMLTGFPPYDQATLADQRLQIIA-EGYLVEQLDDWGIT--LSQEAGDLLQRMMRIEPSERL-TLAEVSGHPWVA 401          
BLAST of mRNA_P-wetherbeei_contig1620.1.2 vs. uniprot
Match: A0A7S2P5Y1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P5Y1_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.060e-38
Identity = 97/250 (38.80%), Postives = 136/250 (54.40%), Query Frame = 1
Query:  553 EDPWRELAALQNLNADGGHPHVEQLVEAIEDDEFLFKITPWCVDGEAFELIP-------LPEAQARRLIRQVLSALSFMHQRNVFHRDVSLENILIERSANGDQSARLGDMGMALNIPLDPQTGQ-----------RLPIAPQGRCGKPACISPELHGNAQPFDAVAADVWSSGSVLYMLLLGLSPWSC--IGDSLFQVISVEGRLAPLLRTWGLSGRISPEAVDLLQCMLRADPAQRLATVEDVLAHPW 1242
            EDP +E+A LQ +  D  HP+V      ++D  +L+ ++P+C  G+ FE +        L E +AR   RQ+L  L  +  R + HRD+SLENIL+      D  + + DMGM L +P     G            R  I PQG CGK   +SPE+  N + FD  A D+W++G++LY++L G  PW    + D  F+VI V GRL   L+ W +   IS EA DLLQ ML+ DP  RL T+  V+ HPW
Sbjct:  133 EDPLKEVACLQLIGND--HPNVLGCRVVLQDKNYLYIVSPYCNRGDLFENVTHRAGDEGLYEPEARYWFRQILQGLHHLQSRGICHRDLSLENILVN-----DNDSLIIDMGMCLRVPYSSSAGDGSISDVYNGTARRLIVPQGSCGKLNYMSPEIFANFEAFDGFAIDLWAAGAILYIMLTGFPPWDTPQLTDMRFEVI-VTGRLNEQLQAWEVD--ISDEAADLLQGMLQLDPRNRL-TLAQVMTHPW 371          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1620.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3L2F1_9STRA2.440e-4441.39Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
D7FTS8_ECTSI3.200e-4437.78SOS2 (SALT OVERLY SENSITIVE 2) kinase n=2 Tax=Ecto... [more]
W7TKV7_9STRA3.350e-4339.64Protein kinase, catalytic domain protein n=2 Tax=N... [more]
A0A4D9CSW9_9STRA1.230e-4240.00Protein kinase domain-containing protein n=1 Tax=N... [more]
B8BR32_THAPS8.170e-4138.46Protein kinase domain-containing protein (Fragment... [more]
A0A7S1CYY2_CYCTE2.790e-4037.65Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2P167_9STRA6.080e-4036.13Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1Z5JLN4_FISSO1.070e-3938.43Protein kinase domain-containing protein n=2 Tax=F... [more]
A0A6V2QHT5_9STRA2.540e-3939.39Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2P5Y1_9STRA1.060e-3838.80Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1620contigP-wetherbeei_contig1620:226..3605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps31472
PFAMsPkinase
Model size2206
Max annot lvl2759|Eukaryota
KEGG koko:K08796
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.77e-42
EggNOG OGsKOG0588@1|root,KOG0588@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
Cds size1650
COG categoryT
BRITEko00000,ko01000,ko01001,ko03036,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1620.1.2prot_P-wetherbeei_contig1620.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1620 307..3130 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186080.0303335-UTR-P-wetherbeei_contig1620:225..3061683186080.0303335-UTR-P-wetherbeei_contig1620:225..306Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1620 226..306 +
1683186080.0781095-UTR-P-wetherbeei_contig1620:3130..36051683186080.0781095-UTR-P-wetherbeei_contig1620:3130..3605Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1620 3131..3605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186080.0386767-CDS-P-wetherbeei_contig1620:306..7081683186080.0386767-CDS-P-wetherbeei_contig1620:306..708Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1620 307..708 +
1683186080.0458658-CDS-P-wetherbeei_contig1620:1058..12171683186080.0458658-CDS-P-wetherbeei_contig1620:1058..1217Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1620 1059..1217 +
1683186080.0557742-CDS-P-wetherbeei_contig1620:1484..16331683186080.0557742-CDS-P-wetherbeei_contig1620:1484..1633Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1620 1485..1633 +
1683186080.0632205-CDS-P-wetherbeei_contig1620:1904..21581683186080.0632205-CDS-P-wetherbeei_contig1620:1904..2158Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1620 1905..2158 +
1683186080.0704896-CDS-P-wetherbeei_contig1620:2444..31301683186080.0704896-CDS-P-wetherbeei_contig1620:2444..3130Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1620 2445..3130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1620.1.2

>prot_P-wetherbeei_contig1620.1.2 ID=prot_P-wetherbeei_contig1620.1.2|Name=mRNA_P-wetherbeei_contig1620.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=550bp
MVWNRSPNRVRERRLAVVLPKRKRRVARMTPSLMSTASSLTGAVPPPFPP
ATVGRASRLCHSPLVLWSQSSGRMFYADPRNTKSSRCQFEGVVAQCREVL
LEPESQDNATAAIARSPCGKVFVLRRESPPFALKVLRKDIVEAKAVRQGR
VLGQLSGEDPWRELAALQNLNADGGHPHVEQLVEAIEDDEFLFKITPWCV
DGEAFELIPLPEAQARRLIRQVLSALSFMHQRNVFHRDVSLENILIERSA
NGDQSARLGDMGMALNIPLDPQTGQRLPIAPQGRCGKPACISPELHGNAQ
PFDAVAADVWSSGSVLYMLLLGLSPWSCIGDSLFQVISVEGRLAPLLRTW
GLSGRISPEAVDLLQCMLRADPAQRLATVEDVLAHPWFAGHGSNAGDAGN
YGGGHDFGGGRGGRGSVGGVRGHHHGISNGGGGGCGGGGGGGGGAGGDSI
DSVGATASFDDGSCGSGHVLNGGGGSSSGGDFMSYGGDGSAGGSSSGGDG
WNNGSGWNGSSEDGETSGSTAGGAAAAVAAAHTSAAGGMDEEIMFGGTP*
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mRNA from alignment at P-wetherbeei_contig1620:226..3605+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1620.1.2 ID=mRNA_P-wetherbeei_contig1620.1.2|Name=mRNA_P-wetherbeei_contig1620.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3380bp|location=Sequence derived from alignment at P-wetherbeei_contig1620:226..3605+ (Phaeothamnion wetherbeei SAG_119_79)
CGAGCAAACTACTTTGCGGGCAGCTGCCCTCTCAGGAAAGGGACGGCCGG CCTTTTCCGCTTGGCGGAACCACCATCATTAATGGTGTGGAACAGATCTC CAAATCGCGTGCGCGAACGAAGACTCGCAGTGGTTTTGCCCAAGAGAAAG CGACGCGTTGCAAGGATGACGCCCTCACTTATGAGCACAGCCAGCTCTCT CACTGGCGCCGTGCCGCCACCTTTTCCACCTGCAACGGTGGGCAGAGCGT CGCGGCTTTGTCATTCGCCGCTCGTGCTCTGGAGCCAATCCTCTGGCCGG ATGTTTTACGCGGATCCGCGAAATACCAAGTCGAGCCGCTGCCAGTTCGA AGGCGTCGTCGCACAGTGCAGAGAGGTTTTACTCGAGCCGGAGTCGCAGG ACAATGCAACGGCCGCCATTGCGCGGTCTCCCTGCGGCAAAGTGTTTGTG CTCCGACGCGAAAGTCCGCCGTTCGCGCTGAAGGTGAGCATGAAACTTCA ACTTTGCACTAGGGTAAGGATTGTGTCCATTCTTGTTAAATCAGTTATAG TACAGATGGAGCGCGCCCAAAACCTGTGCACCACATCCTTCAGTTGAGGA TTCACATGTTGAAATTTGTTTTCCTTCTTGCATCGCATATATGCGACTAT CGCCCGACGCTGAAAAGGAGAAGGAGCTTTATGACTTGCAGGAGTTTATG ACGTAGATGCGATGCGGAAAGAGAAGTTTTCCCTGTGCGGCCGTGCATCC CCGTCTCACACCTGCGTTGACGCCTGGCTCTCCCGCCGTCGCTTCCCTCC CATCAACCCCGCCGCCGCCACCGCCGCCGCCAGGTCTTGCGCAAGGACAT CGTGGAGGCGAAGGCGGTGCGGCAAGGCCGGGTGCTGGGGCAGCTCTCGG GTGAGGACCCGTGGCGGGAGCTGGCAGCGCTTCAAAACCTCAACGCCGAC GGCGGCCACCCGCACGTTGAGCAGCTGGTCGAGGCTATCGAGGTGCGGAT CGGAAAAGATGCCAGCGTCCCAGCATATATATTGTTTCTGCTTTTTCCCT CTCTTCGTTTTTCCCTATTTGTATTTCGGAGTTGGTCGTTTGGCTGTTGC TACTCGACGTACTTCTCTTTTGGAAGAGGAGAGGGCAATTGGTGCCCCTT GCCTCACAGAAGAAAGCCGGCTAATCGCACCGGAAGGCATGCTCTTTTTG GCTCAAAGCTTCCTGCCTGCCTGGCATTCCCTTTGATTAGTTTTCTTTCT TCTCCACAGGACGACGAGTTTCTGTTCAAAATCACGCCGTGGTGCGTCGA CGGCGAGGCCTTCGAGCTGATTCCACTGCCTGAGGCCCAGGCGCGGCGCC TCATCCGCCAGGTACTCTCAGCCCTTAGCTTCATGCACCAGCGGAACGTC TTCCACAGGTGAGACTGCATCGCAACGAAGAGTTCTTGGCCCGCCGCCAC CTTCACCGCCACATACGTGCCGTGTTAATTCGGCTCTGTCTATTTTGCTT CTCGGTGCGTCGCCTGATTGGATCTATTTCTGTTCTTGCCGCCGTCCGCC CGCGTGCGTGCCGGCTTGCCTGCTCGGCCTCTGCTGTCGCCGTTAAGTAA TCGCTTTCGAAACCGTTGTTTGCCGCCGCCCGCCGCCGCCGCACCGCCGT GACAAACGCAAACTGGAAAACACCAACAGGGATGTATCGCTCGAGAACAT ACTCATCGAGCGGTCGGCGAACGGCGATCAGTCGGCGCGCCTCGGAGACA TGGGCATGGCCCTCAACATCCCGCTGGATCCCCAGACAGGGCAGCGGCTG CCGATCGCGCCGCAGGGCCGCTGCGGCAAGCCCGCCTGCATCAGCCCGGA ACTGCACGGCAACGCGCAGCCCTTCGACGCCGTCGCCGCCGACGTGTGGT CAAGCGGGAGCGTGCTCTACATGCTCCTTTTAGGTGAGTCTTTTGTTCGA TATTTGCAGAGTGCTGTGAGGTCCTGCTGAAAAGAACGCAGATAGAAGCG GTGACGTTTGTTTCTATTGCTATAGTTAAGGGAGCATAAGCTTCACTTGC TTAGTGGCATAGGTGAATGGCGTGCAGCTTGGCAAGGTGTGCCAGAGCCC GTCGGTTTCCATGAAAGCACACACTCCTCCCGTCAATGGCAACAAAAGAG AAGCCTTCCTTAGCCCCATCTTCCTTCTCGTCTTCGTATCCTCCTGATGC GCACTTGTGCCCTCGGCAGGCCTGAGCCCGTGGAGCTGCATCGGCGACTC CCTCTTCCAGGTCATCAGCGTCGAAGGCCGCCTGGCACCCCTGCTCCGGA CTTGGGGCCTCTCCGGCCGCATCTCCCCCGAGGCTGTCGACCTCCTGCAG TGCATGCTCCGGGCCGATCCAGCGCAGCGGCTGGCCACCGTCGAGGACGT GCTGGCGCACCCGTGGTTCGCCGGCCACGGCAGCAACGCAGGCGATGCCG GCAACTACGGCGGTGGCCACGACTTTGGCGGCGGCCGCGGCGGCCGCGGT AGCGTCGGTGGCGTCCGCGGCCACCACCACGGCATTAGCAATGGCGGCGG CGGCGGCTGCGGCGGCGGCGGCGGGGGTGGTGGCGGTGCTGGGGGCGACA GCATTGACAGTGTCGGGGCCACCGCCAGCTTTGACGACGGCAGCTGCGGC AGCGGCCACGTTTTGAACGGAGGCGGCGGGAGCAGCAGTGGTGGCGACTT CATGAGCTATGGCGGCGACGGCAGCGCCGGCGGCAGCAGCAGCGGTGGCG ACGGTTGGAACAACGGCAGTGGCTGGAACGGCAGCAGCGAGGACGGGGAA ACGAGCGGCAGCACTGCCGGCGGCGCCGCGGCCGCCGTGGCTGCTGCGCA CACGAGCGCAGCAGGAGGGATGGACGAAGAAATTATGTTCGGGGGGACGC CCTAACAGCGAAAGAAAGAGGGGAAGGGAGAGACGGCGAGGGCGGGTCCG CAACGAGTAAGGCGGGGGGAAGTAATTGGTTTTGTAGACAGAGCTGGCTG GCTGGTCGTTCCAGAAGAAGACATTATCAGACCAGAGCGAGCCAACGGGC CACCCCGCACTGCAGATGAGCGATGCTGGGCGTGTGGAAGGATGGAGGAG GGCAGGCAGGTACCGGACCGTTACAAGCAACGACGGCGGAACGAAACTAC CTGATGGGAGGAGGGAGGGGGAGGAAGCACAGGAAGTGGGCACGTAGATA GGATGGGATGGGGCGGGGCGGAAGCGCGTCTCGCACTGAATTCCGCCCCG GCGTGGCACAAGGCTCTTATAGTGGGAATGGCAGGCAGCGGACAAGTGGA CAGAAAAAAGCGGCACAAACATCTGGCAGCCTTTAGCGCCATTCTTTTCA CGACGATTAAGTGGAAATTTTCGCTCTCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1620:226..3605+

>mRNA_P-wetherbeei_contig1620.1.2 ID=mRNA_P-wetherbeei_contig1620.1.2|Name=mRNA_P-wetherbeei_contig1620.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1650bp|location=Sequence derived from alignment at P-wetherbeei_contig1620:226..3605+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGTGGAACAGATCTCCAAATCGCGTGCGCGAACGAAGACTCGCAGT
GGTTTTGCCCAAGAGAAAGCGACGCGTTGCAAGGATGACGCCCTCACTTA
TGAGCACAGCCAGCTCTCTCACTGGCGCCGTGCCGCCACCTTTTCCACCT
GCAACGGTGGGCAGAGCGTCGCGGCTTTGTCATTCGCCGCTCGTGCTCTG
GAGCCAATCCTCTGGCCGGATGTTTTACGCGGATCCGCGAAATACCAAGT
CGAGCCGCTGCCAGTTCGAAGGCGTCGTCGCACAGTGCAGAGAGGTTTTA
CTCGAGCCGGAGTCGCAGGACAATGCAACGGCCGCCATTGCGCGGTCTCC
CTGCGGCAAAGTGTTTGTGCTCCGACGCGAAAGTCCGCCGTTCGCGCTGA
AGGTCTTGCGCAAGGACATCGTGGAGGCGAAGGCGGTGCGGCAAGGCCGG
GTGCTGGGGCAGCTCTCGGGTGAGGACCCGTGGCGGGAGCTGGCAGCGCT
TCAAAACCTCAACGCCGACGGCGGCCACCCGCACGTTGAGCAGCTGGTCG
AGGCTATCGAGGACGACGAGTTTCTGTTCAAAATCACGCCGTGGTGCGTC
GACGGCGAGGCCTTCGAGCTGATTCCACTGCCTGAGGCCCAGGCGCGGCG
CCTCATCCGCCAGGTACTCTCAGCCCTTAGCTTCATGCACCAGCGGAACG
TCTTCCACAGGGATGTATCGCTCGAGAACATACTCATCGAGCGGTCGGCG
AACGGCGATCAGTCGGCGCGCCTCGGAGACATGGGCATGGCCCTCAACAT
CCCGCTGGATCCCCAGACAGGGCAGCGGCTGCCGATCGCGCCGCAGGGCC
GCTGCGGCAAGCCCGCCTGCATCAGCCCGGAACTGCACGGCAACGCGCAG
CCCTTCGACGCCGTCGCCGCCGACGTGTGGTCAAGCGGGAGCGTGCTCTA
CATGCTCCTTTTAGGCCTGAGCCCGTGGAGCTGCATCGGCGACTCCCTCT
TCCAGGTCATCAGCGTCGAAGGCCGCCTGGCACCCCTGCTCCGGACTTGG
GGCCTCTCCGGCCGCATCTCCCCCGAGGCTGTCGACCTCCTGCAGTGCAT
GCTCCGGGCCGATCCAGCGCAGCGGCTGGCCACCGTCGAGGACGTGCTGG
CGCACCCGTGGTTCGCCGGCCACGGCAGCAACGCAGGCGATGCCGGCAAC
TACGGCGGTGGCCACGACTTTGGCGGCGGCCGCGGCGGCCGCGGTAGCGT
CGGTGGCGTCCGCGGCCACCACCACGGCATTAGCAATGGCGGCGGCGGCG
GCTGCGGCGGCGGCGGCGGGGGTGGTGGCGGTGCTGGGGGCGACAGCATT
GACAGTGTCGGGGCCACCGCCAGCTTTGACGACGGCAGCTGCGGCAGCGG
CCACGTTTTGAACGGAGGCGGCGGGAGCAGCAGTGGTGGCGACTTCATGA
GCTATGGCGGCGACGGCAGCGCCGGCGGCAGCAGCAGCGGTGGCGACGGT
TGGAACAACGGCAGTGGCTGGAACGGCAGCAGCGAGGACGGGGAAACGAG
CGGCAGCACTGCCGGCGGCGCCGCGGCCGCCGTGGCTGCTGCGCACACGA
GCGCAGCAGGAGGGATGGACGAAGAAATTATGTTCGGGGGGACGCCCTAA
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