mRNA_P-wetherbeei_contig1617.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1617.2.1
Unique NamemRNA_P-wetherbeei_contig1617.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1617.2.1 vs. uniprot
Match: D7FXI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI5_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 2.220e-33
Identity = 71/129 (55.04%), Postives = 94/129 (72.87%), Query Frame = 1
Query:    1 QGLGLGAASAANSGGTFVAILLHKGLAAASLGSVLYRGGITGGQYSAMMFSFALLTPLGAAAGLLVQQGF-GSSVGAGICTALGAGTFVHVAASEILPRELVHDAANKSYKLASLLAGFGILAALSPWV 384
            +GLGLGA+S + + G F AI++HKGLAA SLG + +    +  Q+   M  F+LLTPLGAA G+LV+    GSS GAG+CTALGAGTF+HVAA E+LPREL+HD+  K+ K+A L+ G+   AALS +V
Sbjct:    2 EGLGLGASSESAAPGIFAAIVVHKGLAAFSLGCIFFSSECSRLQFFLCMGVFSLLTPLGAALGMLVRASSDGSSAGAGVCTALGAGTFLHVAAMEVLPRELLHDSRMKNTKMACLVGGYLSFAALSRYV 130          
BLAST of mRNA_P-wetherbeei_contig1617.2.1 vs. uniprot
Match: A0A6H5JI31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI31_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.060e-30
Identity = 72/129 (55.81%), Postives = 94/129 (72.87%), Query Frame = 1
Query:    1 QGLGLGAASAANSGGTFVAILLHKGLAAASLGSVLYRGGITGGQYSAMMFSFALLTPLGAAAGLLVQQGF-GSSVGAGICTALGAGTFVHVAASEILPRELVHDAANKSYKLASLLAGFGILAALSPWV 384
            +GLGLGA+S + + G F AI++HKGLAA SLG + +    +  QY   M  F+LLTPLGAA G+LV+    GSS GAG+CTALGAGTF+HVAA E+LPREL+HD+  K+ K+A L+ G+   AALS +V
Sbjct:  511 EGLGLGASSESAAPGIFAAIVVHKGLAAFSLGCIFFSSECSRLQYFLCMGVFSLLTPLGAAVGMLVRASSDGSSAGAGVCTALGAGTFLHVAAMEVLPRELLHDSRLKNTKMACLVGGYLSFAALSRYV 639          
BLAST of mRNA_P-wetherbeei_contig1617.2.1 vs. uniprot
Match: A0A7S2USU1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USU1_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 9.110e-18
Identity = 56/132 (42.42%), Postives = 78/132 (59.09%), Query Frame = 1
Query:    1 QGLGLGAASAANSGGTFVAILLHKGLAAASLGSVL---YRGGITGGQYSAMMFS-FALLTPLGAAAGLLVQQGFGSSVGAGICTALGAGTFVHVAASEILPRELVHDA-ANKSYKLASLLAGFGILAALSPW 381
            +GLGLGA S A+  G F+AI+ HK +AA S+G++L   Y   I    +   + + FA+ TP+GA  G+ +      + G G+CTALGAGTF+HVA  EI+P EL     A+K  KL  +  GF + A   PW
Sbjct:   77 EGLGLGA-SQAHQFGVFIAIVSHKTMAAMSVGALLSQAYTQRIISQVHMIFLITAFAIATPVGAILGICIDDLLEDTAGPGVCTALGAGTFLHVATMEIIPHELEDKRYASKPTKLLVMAVGFSLFACTVPW 207          
BLAST of mRNA_P-wetherbeei_contig1617.2.1 vs. uniprot
Match: W4FPG1_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPG1_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.830e-17
Identity = 52/129 (40.31%), Postives = 80/129 (62.02%), Query Frame = 1
Query:    1 QGLGLGAASAANSGGTFVAILLHKGLAAASLGSVLYRGGITGGQYSAMMFSFALLTPLGAAAGLLVQQGFGS--SVGAGICTALGAGTFVHVAASEILPRELVHDAANKSYKLASLLAGFGILAALSPW 381
            +GLG+GA S  ++ G F+AI+LHKGLAA +LGS + +  +  G++ A MF F++++ LG   G  + +   S  S  AGIC AL +GTF++VA  EI+P E  H  ++ + K   LL G+ +   L+ W
Sbjct:  189 EGLGIGAQST-SAWGVFLAIILHKGLAAFALGSGMLKSQVHKGKFIAYMFLFSMMSILGIVVGWCIAESESSEESAAAGICLALASGTFIYVAVMEIIPLEFGHGRSDPT-KTLLLLFGYAVFGCLAKW 315          
BLAST of mRNA_P-wetherbeei_contig1617.2.1 vs. uniprot
Match: A0A397BGH1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A397BGH1_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.010e-15
Identity = 52/137 (37.96%), Postives = 80/137 (58.39%), Query Frame = 1
Query:    1 QGLGLGAASAANSGGTFVAILLHKGLAAASLGSVLYRGGITGGQYSAMMFSFALLTPLGAAAGLLVQQGFGS----------SVGAGICTALGAGTFVHVAASEILPRELVHDAANKSYKLASLLAGFGILAALSPW 381
            +GLG+GA S  ++ G F+AI+LHKGLAA +LGS + +  +  G++ A MF F++++ LG   G  + +   S          S  AGIC AL +GTF++VA  EI+P E  H  ++ + K   LL G+ +   L+ W
Sbjct:  188 EGLGIGAQST-SAWGVFLAIILHKGLAAFALGSGMLKSQVHKGKFIAYMFLFSMMSILGIVVGWCIAESESSEEVVAAPTRFSAAAGICLALASGTFIYVAVMEIIPLEFGHGRSDPT-KTLLLLFGYAVFGCLAKW 322          
BLAST of mRNA_P-wetherbeei_contig1617.2.1 vs. uniprot
Match: A0A1W0A7D8_9STRA (Zinc (Zn2)-Iron (Fe2) Permease (ZIP) family n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7D8_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.560e-15
Identity = 50/129 (38.76%), Postives = 78/129 (60.47%), Query Frame = 1
Query:    1 QGLGLGAASAANSGGTFVAILLHKGLAAASLGSVLYRGGITGGQYSAMMFSFALLTPLGAAAGLLVQQGFGS--SVGAGICTALGAGTFVHVAASEILPRELVHDAANKSYKLASLLAGFGILAALSPW 381
            +GLG+GA S   + G F+AI++HKGLAA +LG+ + +G +T  ++   M  F+L++ +G   G  V     S  S  AGIC AL +GTF++VA  EI+P+E  H  ++   K   L  G+G+  A++ W
Sbjct:  174 EGLGIGAQSTP-AWGVFLAIIIHKGLAAFALGTGMLKGQLTKSKFIGYMLLFSLMSIIGIIIGWAVNAADSSEDSAAAGICLALASGTFIYVAVMEIIPQEFSHGKSSLQ-KTLLLCFGYGVFGAIAKW 300          
BLAST of mRNA_P-wetherbeei_contig1617.2.1 vs. uniprot
Match: A0A7S2UYU5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYU5_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.630e-15
Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 1
Query:   67 HKGLAAASLGSVLYR----GGITGGQYSAMMFSFALLTPLGAAAGLLVQQGFGSSVGAGICTALGAGTFVHVAASEILPRELVHDA-ANKSYKLASLLAGFGILAALSPW 381
            HK +AA S+G++L++    G ++      ++ +F+L TP GA  G+ V      S G+G+CTALGAGTF+HVA  EI+  EL     A++  KL ++LAGF + A   PW
Sbjct:    1 HKAMAALSVGTLLHQARSYGALSHRHLVHLVAAFSLATPGGAVVGMCVNLFVEGSQGSGVCTALGAGTFMHVATMEIMQHELQDTKYASRRAKLVAILAGFSVFACTIPW 110          
BLAST of mRNA_P-wetherbeei_contig1617.2.1 vs. uniprot
Match: A0A1V9ZN15_9STRA (Zinc (Zn2)-Iron (Fe2) Permease (ZIP) family n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZN15_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.180e-15
Identity = 50/129 (38.76%), Postives = 78/129 (60.47%), Query Frame = 1
Query:    1 QGLGLGAASAANSGGTFVAILLHKGLAAASLGSVLYRGGITGGQYSAMMFSFALLTPLGAAAGLLVQQGFGS--SVGAGICTALGAGTFVHVAASEILPRELVHDAANKSYKLASLLAGFGILAALSPW 381
            +GLG+GA S   + G F+AI++HKGLAA +LG+ + +  ++  ++ A M  F+L++  G   G  V     S  S  AGIC AL +GTF++VA  EI+P+E  H  ++   K   L+AG+ I  A++ W
Sbjct:  179 EGLGIGAQSTP-AWGVFLAIIIHKGLAAFALGTGMLKSQLSKAKFIAYMLLFSLMSIFGIIIGWAVNAAESSEDSAAAGICLALASGTFIYVAVMEIIPQEFAHGKSSPK-KTLLLVAGYAIFGAIAKW 305          
BLAST of mRNA_P-wetherbeei_contig1617.2.1 vs. uniprot
Match: A0A5D6XSD1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XSD1_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.150e-14
Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = 1
Query:    1 QGLGLGAASAANSGGTFVAILLHKGLAAASLGSVLYRGGITGGQYSAMMFSFALLTPLGAAAGLLVQQGFGS-SVGAGICTALGAGTFVHVAASEILPRELVHD--AANKSYKLASLLAGFGILAALSPW 381
            +GLG+GA ++ ++ G F+AI++HKGLAA +LGS L +  ++       M  F+L+T +G  AG +V       S  AGIC AL +GTF++VA  E++P+E      A +   K A+L  G+ I   L+ W
Sbjct:  218 EGLGIGAQTS-SAWGVFLAIIVHKGLAAFALGSGLVQSPLSTAHVVLYMVLFSLMTVVGIIAGWIVAADSSEDSAAAGICVALASGTFIYVAVMEVIPQEFARHGGARDAGAKTAALCVGYAIFGLLAKW 346          
BLAST of mRNA_P-wetherbeei_contig1617.2.1 vs. uniprot
Match: A0A485KNB2_9STRA (Aste57867_9465 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNB2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.010e-13
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 1
Query:    1 QGLGLGAASAANSGGTFVAILLHKGLAAASLGSVLYRGGITGGQYSAMMFSFALLTPLGAAAGLLVQQGFGSS---VGAGICTALGAGTFVHVAASEILPRELVHDAANKSYKLASLLAGFGILAALSPW 381
            +GLG+GA +   + G F+AI++HKGLAA +LGS + +  +   ++   MF F++++ +G   G  +     SS     AGIC AL +GTF++VA  EI+P E  H  ++ + K   LL G+ +   L+ W
Sbjct:  175 EGLGIGAQNT-TAWGVFLAIIMHKGLAAFALGSGMLKSQVNKTKFIGYMFLFSMMSIVGIVIGWGISDASESSEDSAAAGICLALASGTFIYVAVMEIIPLEFSHGRSDVT-KTLLLLFGYAVFGCLAKW 302          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1617.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXI5_ECTSI2.220e-3355.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI31_9PHAE2.060e-3055.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2USU1_9STRA9.110e-1842.42Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W4FPG1_9STRA6.830e-1740.31Uncharacterized protein n=7 Tax=Aphanomyces astaci... [more]
A0A397BGH1_9STRA1.010e-1537.96Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A1W0A7D8_9STRA1.560e-1538.76Zinc (Zn2)-Iron (Fe2) Permease (ZIP) family n=1 Ta... [more]
A0A7S2UYU5_9STRA2.630e-1540.91Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1V9ZN15_9STRA3.180e-1538.76Zinc (Zn2)-Iron (Fe2) Permease (ZIP) family n=1 Ta... [more]
A0A5D6XSD1_9STRA3.150e-1438.46Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A485KNB2_9STRA3.010e-1336.15Aste57867_9465 protein n=1 Tax=Aphanomyces stellat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1617contigP-wetherbeei_contig1617:4445..5656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FXI5
PFAMsZip
Model size387
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons4
Evalue3.64e-34
EggNOG OGs2D4WF@1|root,2SWII@2759|Eukaryota
Ec32 ortholog descriptionZinc/iron permease
Ec32 orthologEc-28_001780.1
DescriptionZIP Zinc transporter
Cds size387
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186079.1769218-CDS-P-wetherbeei_contig1617:4444..45481683186079.1769218-CDS-P-wetherbeei_contig1617:4444..4548Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1617 4445..4548 -
1683186079.1986725-CDS-P-wetherbeei_contig1617:4757..48561683186079.1986725-CDS-P-wetherbeei_contig1617:4757..4856Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1617 4758..4856 -
1683186079.209763-CDS-P-wetherbeei_contig1617:5191..52501683186079.209763-CDS-P-wetherbeei_contig1617:5191..5250Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1617 5192..5250 -
1683186079.2188976-CDS-P-wetherbeei_contig1617:5531..56561683186079.2188976-CDS-P-wetherbeei_contig1617:5531..5656Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1617 5532..5656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1617.2.1prot_P-wetherbeei_contig1617.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1617 4445..5656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1617.2.1

>prot_P-wetherbeei_contig1617.2.1 ID=prot_P-wetherbeei_contig1617.2.1|Name=mRNA_P-wetherbeei_contig1617.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
QGLGLGAASAANSGGTFVAILLHKGLAAASLGSVLYRGGITGGQYSAMMF
SFALLTPLGAAAGLLVQQGFGSSVGAGICTALGAGTFVHVAASEILPREL
VHDAANKSYKLASLLAGFGILAALSPWV*
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mRNA from alignment at P-wetherbeei_contig1617:4445..5656-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1617.2.1 ID=mRNA_P-wetherbeei_contig1617.2.1|Name=mRNA_P-wetherbeei_contig1617.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1212bp|location=Sequence derived from alignment at P-wetherbeei_contig1617:4445..5656- (Phaeothamnion wetherbeei SAG_119_79)
CAGGGGTTGGGCTTGGGTGCGGCGAGCGCTGCAAACTCGGGAGGCACCTT CGTGGCGATACTGCTGCACAAGGGGCTCGCCGCAGCGTCGCTCGGGAGCG TCCTCTATAGAGGCGGCATCACTGGGTGAGCCGGTGTTGACGGCCGGCAA AGGAAAGGGATGAAGGTCTACTGCTTTTGGAAGGCAGTTTTTTATGTTGT TGATGCCATTGTGGTATTTTTTCTGCTATAAGAGCGAACTGCGGCCTCCA AGCGTTGCTTGTACGGCACAGTGGAAACCTAACGACCGGAACCAGTTCCT GCTTCTTGTGCTGAATGCAATTTTTGATTATTTACACTCCTGCTTTCCTT CCTGGCTTCTCGCCTCCGTCCATGCGATCTGACGGCCGGCCGGCGTCTCC GCACAGGGGTCAGTACTCGGCGATGATGTTCTCCTTCGCTCTTCTGACGC CCCTGGGCGCAGCTGGTAAGGTGCTTGCTGTCGGTTAAAGTGGTTGGCAT CCGTTGGTTCGGGGTCGAGGCTGTCGACGGCTGTGCCGAGGGTTCGAAAC AGGGTATCCGTAACATTTGATGCTGCCAGTTTTACCGGTCGATTACCCTT GTAGGCGGCGGTTTCTTTGCTCCATGAGCTCTTGTCTGTCCCGGCACTGC GCGGTCGCTTTATTCGTTGACCGCTGTGGTATCGAAAGTCGCCCTGCTAT GCCCTGGCACCATCGCCGCCGCCGCCGCCGCCGCCGTTGCCGCCGCCGCC GCTGCCACAAAACCCCGTTGCCGTGGGCTTTTGGTATCGACAAAACACAG CGGGTCTTCTGGTGCAACAAGGATTTGGAAGCAGCGTCGGCGCCGGCATC TGCACCGCCCTCGGCGCAGGGACTTTTGTCCACGTCGCTGCATCAGAAAG TGAGTCAGGGTGCCAATCCAGTGCTTTCTCGGAGTAACAGTCCTTGCTGA GACATTTCAATGGTTTGACTCTTGATCACGAAGAACTTTGGGACGTCGCA CATATGGAATTTTATGCGCTTTGTATGTTCCTAGCCGCCTTCCTGCCGAG CGAATATTTTTAACAGGCATTCCTCGTGTCGAGCCCGCCCCACCGCCCCC GTCACCAGTTTTGCCTCGAGAGTTGGTGCATGACGCAGCCAACAAGAGCT ACAAACTGGCGAGTCTCCTCGCAGGCTTCGGGATCCTCGCGGCTCTCTCG CCGTGGGTATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1617:4445..5656-

>mRNA_P-wetherbeei_contig1617.2.1 ID=mRNA_P-wetherbeei_contig1617.2.1|Name=mRNA_P-wetherbeei_contig1617.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig1617:4445..5656- (Phaeothamnion wetherbeei SAG_119_79)
CAGGGGTTGGGCTTGGGTGCGGCGAGCGCTGCAAACTCGGGAGGCACCTT
CGTGGCGATACTGCTGCACAAGGGGCTCGCCGCAGCGTCGCTCGGGAGCG
TCCTCTATAGAGGCGGCATCACTGGGGGTCAGTACTCGGCGATGATGTTC
TCCTTCGCTCTTCTGACGCCCCTGGGCGCAGCTGCGGGTCTTCTGGTGCA
ACAAGGATTTGGAAGCAGCGTCGGCGCCGGCATCTGCACCGCCCTCGGCG
CAGGGACTTTTGTCCACGTCGCTGCATCAGAAATTTTGCCTCGAGAGTTG
GTGCATGACGCAGCCAACAAGAGCTACAAACTGGCGAGTCTCCTCGCAGG
CTTCGGGATCCTCGCGGCTCTCTCGCCGTGGGTATAG
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