mRNA_P-wetherbeei_contig1616.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1616.2.1
Unique NamemRNA_P-wetherbeei_contig1616.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1616.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1616contigP-wetherbeei_contig1616:5146..6312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size929
Hectar predicted targeting categoryother localisation
Exons2
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186078.8281505-CDS-P-wetherbeei_contig1616:5145..54391683186078.8281505-CDS-P-wetherbeei_contig1616:5145..5439Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1616 5146..5439 +
1683186078.8390577-CDS-P-wetherbeei_contig1616:5677..58481683186078.8390577-CDS-P-wetherbeei_contig1616:5677..5848Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1616 5678..5848 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186078.8496544-UTR-P-wetherbeei_contig1616:5848..63121683186078.8496544-UTR-P-wetherbeei_contig1616:5848..6312Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1616 5849..6312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1616.2.1prot_P-wetherbeei_contig1616.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1616 5146..5848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1616.2.1

>prot_P-wetherbeei_contig1616.2.1 ID=prot_P-wetherbeei_contig1616.2.1|Name=mRNA_P-wetherbeei_contig1616.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
VGGSRGVGVGGSGGGLGVGRSGGGVGVGGSSGGVGVGGSGSGGGGGSGGN
ERPSDVVIASITYAALFERMRRPEWDRVREVMQFPAHEMFKSSYENLRAA
GVLEETGWTIASGPEFVAALARDKYGIKLKWLPSDEEAGCALVTLMPHGR
RIQQ*
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mRNA from alignment at P-wetherbeei_contig1616:5146..6312+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1616.2.1 ID=mRNA_P-wetherbeei_contig1616.2.1|Name=mRNA_P-wetherbeei_contig1616.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1167bp|location=Sequence derived from alignment at P-wetherbeei_contig1616:5146..6312+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGGAGGCAGCCGCGGGGTCGGTGTCGGAGGCAGCGGCGGCGGGCTCGG
CGTCGGACGCAGCGGCGGCGGGGTCGGCGTCGGAGGCAGTAGTGGCGGGG
TCGGCGTCGGAGGCAGCGGCAGCGGCGGCGGCGGCGGCAGCGGCGGAAAT
GAGCGCCCGAGCGACGTTGTCATTGCAAGCATCACCTACGCCGCGCTCTT
TGAGCGCATGCGGCGGCCGGAATGGGACCGCGTGCGAGAGGTCATGCAGT
TCCCAGCACACGAAATGTTCAAGAGCAGCTACGAGAACCTCCGGGTAGGT
GGCGTTCTGTGTTAGGATTTTTGGAAGCTACAGCGACGCTCCGTTAGATG
GTGTTTCTTCGTCTCCTGCAGTCCCTTCAACATTCTTCATTGCTCTTTTC
CCTTGATTATTCCCGAAAGCAGTCGCCGCCACTATCGAATTTGACCTTCG
AATACACACGCGCCCGGTTCGTCACTCCGTCGCTTCCCTTCCAATCGTGC
CGCCGATCCGCTGGATGGCCGCCGCGATGCAGGCGGCCGGGGTGCTAGAA
GAGACGGGCTGGACCATCGCTTCGGGACCGGAGTTCGTGGCGGCGCTGGC
ACGCGACAAGTACGGCATCAAGCTCAAGTGGCTGCCGTCGGACGAGGAGG
CCGGCTGCGCCCTCGTCACCCTGATGCCCCACGGTCGCCGCATCCAGCAG
TAGTAGGGAGTGACCCAGTGGCTAGTGAGGAATGAGGGAGAAGGCCGGGC
CTTAGGGGGACGGGCGGCCTATGGAAGTGAGGCGGGCGGCTGAAATGAGG
CGGGTGAGCGGGCGGCGTTTTATTTGGGTGCGTGGGATGGAGGTTGTCGG
GAAAGTGTATTGTCGGATACGGGGTGTTGTGGACGGAGAAACGCGTCGCA
TCGTGGGGCCATTTGTTTTGTTTGCTTGCGGGATGGTGTCGAGGGGTGGC
TATATACTATATATGGAGAGCTTGTTTCGGTCGAAGGAGGCGGCGGTATA
TGGGGGTAGTCACAGCGCGCCCGGCGAGGCTTGTGTAAAGGCTGGCCCAC
CACGGTCGCGGTGGGCAACTGCATGGAAAAACTATCGCACAACTGGGCGT
GGAACTTAAAAAGATAGATTGAGAGCAAATCCGCACAGAAGACCATAAAA
GAATGGGAGAAGACCTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1616:5146..6312+

>mRNA_P-wetherbeei_contig1616.2.1 ID=mRNA_P-wetherbeei_contig1616.2.1|Name=mRNA_P-wetherbeei_contig1616.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig1616:5146..6312+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGGAGGCAGCCGCGGGGTCGGTGTCGGAGGCAGCGGCGGCGGGCTCGG
CGTCGGACGCAGCGGCGGCGGGGTCGGCGTCGGAGGCAGTAGTGGCGGGG
TCGGCGTCGGAGGCAGCGGCAGCGGCGGCGGCGGCGGCAGCGGCGGAAAT
GAGCGCCCGAGCGACGTTGTCATTGCAAGCATCACCTACGCCGCGCTCTT
TGAGCGCATGCGGCGGCCGGAATGGGACCGCGTGCGAGAGGTCATGCAGT
TCCCAGCACACGAAATGTTCAAGAGCAGCTACGAGAACCTCCGGGCGGCC
GGGGTGCTAGAAGAGACGGGCTGGACCATCGCTTCGGGACCGGAGTTCGT
GGCGGCGCTGGCACGCGACAAGTACGGCATCAAGCTCAAGTGGCTGCCGT
CGGACGAGGAGGCCGGCTGCGCCCTCGTCACCCTGATGCCCCACGGTCGC
CGCATCCAGCAGTAG
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