mRNA_P-wetherbeei_contig1614.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1614.3.1
Unique NamemRNA_P-wetherbeei_contig1614.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1614.3.1 vs. uniprot
Match: A0A835Z0R4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0R4_9STRA)

HSP 1 Score: 296 bits (758), Expect = 6.390e-95
Identity = 150/244 (61.48%), Postives = 192/244 (78.69%), Query Frame = 2
Query:  278 MKVATGLRGDIVDQLGLNGRRDVDRIAAILGGLVVGSFLGSSAVIQALPGPDIIRWTVSWSIAFLPYGFLSLGLAKPGLLQAAVVWLQRLDGDFRERLLRHEAGHFLMGHLCGLPVQEYQADAVTNAVQFYPLSDSSAGGSLWRRRGLSHDDVTRLAIVSLGGIVAECAAYGNSEGGYADLSQLQEFVRMAEPPLTDREQQERVRFAAVMAHTYLKTHDAPFEALLAAFRRKASVAECMKALED 1009
            M  ATG+RGDI+D+LGLNGRRD+DRIA IL GLVVGSFL S+++I+ LPGPDI+R+T SW IAF+PYGFL+LG+AKP LLQ ++V    ++ ++RERL RHEAGHFL+G+LCG+P++ YQAD+VTNAV F+P   SS   ++ RR  +   ++ RLA VSLGGIVAEC  +G SEGGYADL QL   +R  E  L+DREQQ+RVRFAAVMAH+YLKTH    + L AA +R ASV +C++A+ED
Sbjct:    1 MMAATGIRGDIIDKLGLNGRRDIDRIAFILFGLVVGSFLSSTSLIEFLPGPDIVRFTASWVIAFIPYGFLTLGIAKPALLQKSLVKAFSVNPEYRERLARHEAGHFLVGYLCGMPIESYQADSVTNAVAFFPAFYSS--DAMLRR--IPEPELLRLAAVSLGGIVAECLRFGTSEGGYADLMQLNALLRCGEERLSDREQQDRVRFAAVMAHSYLKTHGDALDRLTAAVQRSASVTDCIRAIED 240          
BLAST of mRNA_P-wetherbeei_contig1614.3.1 vs. uniprot
Match: A0A7S4D6I6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6I6_HETAK)

HSP 1 Score: 234 bits (597), Expect = 6.190e-69
Identity = 133/330 (40.30%), Postives = 193/330 (58.48%), Query Frame = 2
Query:  197 VMSALAALKEDGQLSLYNSSNPFY----LAEMKVATGLRG--DIVDQLGLNGRRDVDRIAAILGGLVVGSFLGSSAVIQALPGPDIIRWTVSWSIAFLPYGFLSLGLAKPGLLQAAVVWLQR-LDGDFRERLLRHEAGHFLMGHLCGLPVQEYQADAVTNAVQFYPLSDS----------------------------------------------------SAGGSLWRRRGLSHDDVTRLAIVSLGGIVAECAAYGNSEGGYADLSQLQEFVRMAEPPLTDREQQERVRFAAVMAHTYLKTHDAPFEALLAAFRRKASVAECMKALED 1009
            V++ +  +K +G ++L+NS+  +Y    + ++++ T +RG  D++  LGL+G+ D+D+IA+IL  ++VGS L S  V+Q LPGP+I+RW+V+W +AF PYG+L+LGL+ P +LQ  ++ + R +D  +RERLL HEAGHFL+G+L G+PVQ Y ADA  NAVQFYPL+                                                        G ++ RR  LS D + RL + SL G++AE    G  EGGYADL QLQ F+   E  LTD++QQE VR+ AV A T L+   A   AL+ AFRR ASV EC++ +E+
Sbjct:   40 VVAIMEIMKSNGDINLWNSTFLYYQRYGVGDVRMLTRIRGEKDLIQTLGLDGKSDIDKIASILFAVIVGSILSSLTVLQNLPGPEIVRWSVTWLLAFAPYGYLALGLSFPAVLQRLLIQIFRAVDPAYRERLLYHEAGHFLVGYLVGMPVQSYSADAPINAVQFYPLAGLPQEIKQRSRNTEIPPESVKRNAKEEEEMSIEKLRQLWTKINQDPNGPTRRAVEEGAAIGRRGALSLDQLQRLTVTSLAGVMAEVVQLGEGEGGYADLVQLQNFLYFCEQRLTDQQQQEYVRWGAVQAFTLLEVRRAELAALVEAFRRGASVPECLRVIEE 369          
BLAST of mRNA_P-wetherbeei_contig1614.3.1 vs. uniprot
Match: A0A7S0XV52_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XV52_HEMAN)

HSP 1 Score: 183 bits (464), Expect = 1.900e-50
Identity = 117/282 (41.49%), Postives = 167/282 (59.22%), Query Frame = 2
Query:  197 VMSALAALKEDGQLSLYNSSNPFY--LAEMKVATGLRGDIV-DQLGLNGRRDVDRIAAILGGLVVGSFLGSSAVIQALPGPDI-------IRWTVSWSIAFLPYGFLSLGLAKPGLLQAAVVWLQRL-DGDFRERLLRHEAGHFLMGHLCGLPVQEYQAD-AVTNAVQFYPLSDSSAGGSLWRRRGLSHDDVTRLAIVSLGGIVAECAAYGNSEGGYADLSQLQEFVRMAEPPLTDREQQERVRFAAVMAHTYLKTHDAPFEALLAAFRRKASVAECMKALE 1006
            VM AL   K  G+ +++N++ P +  + + +V    RG I  D +   G  D++ ++      +  S L S+    A+P  D+        R+ V+ +I   P+ FL +GL+ PGLLQA ++  +RL  G+FR+RL+RHEAGHFL+G+  G+P+ EY+AD A+ NA QF+   DS   G     R LSHD V  L  VS+ G+VAE   Y    GGYADLSQLQ F+  A P L D+EQQERVR+ +V+A+T L+TH   FEAL+    R  SV  C+K +E
Sbjct:   15 VMKALNDAKGAGEAAVWNNTQPMFRRVRQGEVRMLTRGVIKEDTIDTRGDDDMEVLSTSFYATLATSMLLSTWASIAIPNMDLPFLRGSDTRFFVTIAIGSTPFAFLGMGLSLPGLLQAILIQARRLVSGEFRDRLIRHEAGHFLVGYCLGVPIAEYKADDAILNACQFF--EDSFDTGPA---RRLSHDQVDTLCAVSMAGVVAESITYEKGLGGYADLSQLQGFLSRATPILNDKEQQERVRWGSVLAYTVLRTHGEAFEALVECMGRGESVESCVKVIE 291          
BLAST of mRNA_P-wetherbeei_contig1614.3.1 vs. uniprot
Match: A0A7S0V097_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V097_9CRYP)

HSP 1 Score: 172 bits (437), Expect = 1.370e-46
Identity = 110/276 (39.86%), Postives = 163/276 (59.06%), Query Frame = 2
Query:  188 GKAVMSALAALKEDGQLSLYNSSNPFY--LAEMKVATGLRGDIV-DQLGLNGRRDVDRIAAILGGLVVGSFLGSSAVIQALPGPDI-------IRWTVSWSIAFLPYGFLSLGLAKPGLLQAAVVWLQR-LDGDFRERLLRHEAGHFLMGHLCGLPVQEYQA-DAVTNAVQFYPLSDSSAGGSLWRRRGLSHDDVTRLAIVSLGGIVAECAAYGNSEGGYADLSQLQEFVRMAEPPLTDREQQERVRFAAVMAHTYLKTHDAPFEALLAAFRRKAS 979
            G+ V  AL   K+ G+ +++NS+ P +  + + +V    RG I  D +   G  D++ ++      +  S   S+    A+P  DI       +R+ V+ +I   P+ FL LGL+ PGLLQA ++  +R + G+FR+RL+RHEAGHFL+G+  G+P+ EY A DA+ NA QF+  +  +        R L+H+ V  L  VS+ G+VAE  AY    GGYADLSQLQ F+  A P L DREQQ++VR+ +V+A+T L+TH    EAL+ A  R AS
Sbjct:   16 GQLVRKALNDAKQAGEATVWNSTQPMFRRVRQGEVRMLTRGVIKEDTIDTRGDDDMEVLSTSFYATLATSMALSTWASIAIPNMDIPFLRGSDVRFFVTIAIGSSPFAFLGLGLSLPGLLQAILIQARRAVSGEFRDRLVRHEAGHFLVGYCLGVPIAEYAAGDAILNACQFFEDAFDTPA------RRLTHNQVDTLCAVSMAGVVAESLAYDKGLGGYADLSQLQGFLSRATPILDDREQQDKVRWGSVLAYTVLRTHGGALEALVEAMGRGAS 285          
BLAST of mRNA_P-wetherbeei_contig1614.3.1 vs. uniprot
Match: A0A7S4KRX3_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KRX3_GUITH)

HSP 1 Score: 174 bits (441), Expect = 4.030e-46
Identity = 110/292 (37.67%), Postives = 168/292 (57.53%), Query Frame = 2
Query:  197 VMSALAALKEDGQLSLYNSSNPFY----LAEMKVATGLRGDIV-DQLGLNGRRDVDRIAAILGGLVVGSFLGSSAVIQALPG--------PDIIRWTVSWSIAFLPYGFLSLGLAKPGLLQAAVVWLQRLDG-DFRERLLRHEAGHFLMGHLCGLPVQEYQAD-AVTNAVQFYPLSDSSAGGSLWRRRGLSHDDVTRLAIVSLGGIVAECAAYGNSEGGYADLSQLQEFVRMAEPPLTDREQQERVRFAAVMAHTYLKTHDAPFEALLAAFRRKASVAECMKALEDVAAAGR 1027
            V+ AL +LKE  QLS+++S    Y    + E+++ T  RG +  D   L+G  D++ +       ++ S L S+     +P          D++R+ V++ +  LP+ FL +GL+ PGLLQ  ++ ++R    ++RERLL HEAGHFL+G+  GLP+  Y AD  + NAVQF+   + S          +SH+ +  L  VS  G+VAE   +G++ GGYAD SQLQ F+  + P L DREQQERVR+  V A T LK  +   +AL+ A  RK+S+++C+ A+E     GR
Sbjct:   92 VVDALNSLKERSQLSMWDSVPSLYRRVSVGEVRLLT--RGLVKEDTFDLSGNNDMEVLNVSFYATLLSSMLLSTLAACFIPEYPNLPFLQGDLLRYVVTFGLGSLPFAFLGMGLSVPGLLQLVLIQIRRAASQEYRERLLWHEAGHFLVGYCLGLPIAAYSADDPILNAVQFFDSEEDS----------ISHEFLDVLCAVSTAGVVAEAIRFGDAIGGYADFSQLQSFLYRSRPRLNDREQQERVRWGCVAAFTILKNREESLKALIEAMSRKSSISQCILAIESQQQLGR 371          
BLAST of mRNA_P-wetherbeei_contig1614.3.1 vs. uniprot
Match: A0A5J4YTJ7_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTJ7_PORPP)

HSP 1 Score: 172 bits (437), Expect = 1.200e-44
Identity = 109/279 (39.07%), Postives = 154/279 (55.20%), Query Frame = 2
Query:  197 VMSALAALKEDGQLSLYNSSN----PFYLAEMKVATGLRGDIVDQLGLNGRRDVDRIAAILGGLVVGSFLGSSAVIQALPGPDIIRWTVSWSIAFLPYGFLSLGLAKPGLLQAAVVWLQR-LDGDFRERLLRHEAGHFLMGHLCGLPVQEYQADAVTNAVQFYPLSDSSAGGSLWRRRGLSHDDVTRLAIVSLGGIVAECAAYGNSEGGYADLSQLQEFVRMAEPPLTDREQQERVRFAAVMAHTYLKTHDAPFEALLAAFRRKASVAECMKALEDVAA 1018
            V+S L  +KE G L  Y S+     P    EM++ T  R      L   G  D   I      ++  S   + A+ Q LPGPD++R+  ++S+  LPY FL  G++ P LLQ A++  +R    +FR RL  HEAGHFL+G+L G+PV+EY+ADAV NAVQFY   + +   S   R   +H+ V  LAI+SL G+V+E   +  + GGYAD  QLQ     + PPL  R  Q +VR+  V A+T L+ + A  E L A       + EC+ A+ED +A
Sbjct:  194 VVSKLEEMKEQGLLKKYGSAQTLARPISFQEMQLLTR-RKVTPKTLDFKGEGDKSAITVSFFAVLALSISSALAIEQYLPGPDVVRYAAAFSVGGLPYVFLLFGISVPDLLQFALILARRTFSKEFRTRLAAHEAGHFLVGYLLGVPVREYKADAVMNAVQFYFDFEEAQQDSKPLR--FTHEQVDELAIISLAGVVSEILLFKQASGGYADFMQLQRVANRSVPPLEPRAVQAKVRWGCVRAYTLLQQNAAALEQLTAKMAVGRPLDECIAAIEDASA 469          
BLAST of mRNA_P-wetherbeei_contig1614.3.1 vs. uniprot
Match: A0A7S3AC95_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3AC95_9RHOD)

HSP 1 Score: 163 bits (413), Expect = 1.560e-42
Identity = 106/274 (38.69%), Postives = 155/274 (56.57%), Query Frame = 2
Query:  209 LAALKEDGQLSLYN----SSNPFYLAEMKVATGLRGDIVDQLGLNGRRDVDRIAAILGGLVVGSFLGSSAVIQALPGPDIIRWTVSWSIAFLPYGFLSLGLAKPGLLQAAVVWLQ-RLDGDFRERLLRHEAGHFLMGHLCGLPVQEYQADAVTNAVQFYP---LSDSSAGGSLWRRRGLSHDDVTRLAIVSLGGIVAECAAYGNSEGGYADLSQLQEFVRMAEPPLTDREQQERVRFAAVMAHTYLKTHDAPFEALLAAFRRKASVAECMKALE 1006
            L  L E G L  +N    S  P  +AE+K+   L  D    LGL  +  +D   A     V+G     + + QA+   D+  ++ S+ I  L   FL++G   PGLL A +  +   L  DF+ERLL HEAGHFL G+LCG+PV++Y  + +T  V  +    L++  A G +      S DDV  L++V+L G  AE   YG +EGG ADL+ LQ  +   +PP+  +EQQE+ R+ A+MA+T LK + A +EAL+ A + K SVA+C+KA+E
Sbjct:   73 LDGLSEQGDLKKWNRQKLSVRPVSIAELKMNARLDAD---SLGLTQKNTIDLKLASFA--VIGGSSLLAVLCQAVFSGDLAYFS-SYLIGGLSIAFLAIGSTAPGLLTALITTISANLRPDFKERLLLHEAGHFLAGYLCGVPVKKYDVNPITTGVTIFGGKFLTEDVAQGRV------SRDDVNALSVVALAGPAAEVIKYGQAEGGMADLNLLQNLLVRTKPPMLSKEQQEQTRWGALMAYTVLKKYSAEYEALVEAMKAKKSVADCIKAIE 334          
BLAST of mRNA_P-wetherbeei_contig1614.3.1 vs. uniprot
Match: A0A7S2G7P9_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7P9_9STRA)

HSP 1 Score: 161 bits (407), Expect = 6.260e-42
Identity = 90/232 (38.79%), Postives = 131/232 (56.47%), Query Frame = 2
Query:  413 QALPGPDIIRWTVSWSIAFLPYGFLSLGLAKPGLLQAAVVWLQ-RLDGDFRERLLRHEAGHFLMGHLCGLPVQEYQADAVTNAVQFYPLSDSSA---------------------------GGSL------WRRRGLSHDDVTRLAIVSLGGIVAECAAYGNSEGGYADLSQLQEFVRMAEPPLTDREQQERVRFAAVMAHTYLKTHDAPFEALLAAFRRKASVAECMKALE 1006
             A+PG  I+R+ +SW ++F P+ FL   +AKP  LQ  +V +   L+ + R+R+ RHEAGHFL+GHLCGLPV +Y A+++ NAVQF+PL D                              G SL      W  RG+       LA+VS+ G++AE   YG ++GGYAD SQLQE +   +PPL D  +++ VR+AA+MA+T L+ H    E L+ +     SV  C++ L+
Sbjct:   12 NAIPG--IVRFVLSWVLSFAPFAFLGWSVAKPDQLQRIIVKVNCALNPEVRQRMARHEAGHFLVGHLCGLPVSDYSANSIENAVQFWPLDDPERTKALRSVMGMRGESPAWGDAEDSSGRPGSSLMNPRRVWPYRGVDPATTDLLAVVSVAGVMAEILEYGEAKGGYADFSQLQEILEYCDPPLDDAAKEDLVRWAALMANTVLRRHADAMEVLVTSVAEGRSVTACIQLLD 241          
BLAST of mRNA_P-wetherbeei_contig1614.3.1 vs. uniprot
Match: A0A7S2SMI0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SMI0_9STRA)

HSP 1 Score: 154 bits (388), Expect = 7.070e-40
Identity = 88/178 (49.44%), Postives = 122/178 (68.54%), Query Frame = 2
Query:  185 NGKAVMSALAALKEDGQLSLYNSS---NPFYLAEMKVATGLR---GDIVDQLGLNGRRDVDRIAA-ILGGLVVGSFLGSSAVIQALPGPDIIRWTVSWSIAFLPYGFLSLGLAKPGLLQAAVVWLQRLD-GDFRERLLRHEAGHFLMGHLCGLPVQEYQADAVTNAVQFYPLSDSSAG 694
            +G+   S L AL+EDGQ  L+NS+       ++E ++ T  R   GD++ +L ++G RDVDRIAA +L    +   L S AV  +LPGP+ +R+ + W + F PY FLSLGLA PG LQ  ++ +QRL    +R+RLLRHEAGHFL+G+L GLPV+ Y A+AV NAVQF+PL+DS+AG
Sbjct:   14 SGETARSMLKALREDGQARLWNSTALVGSRRVSEAELRTLARIPGGDLISKLNIDGGRDVDRIAAGLLATTGISFTLASQAV--SLPGPESLRFALVWLLTFTPYIFLSLGLALPGSLQTGLIQVQRLALPTYRDRLLRHEAGHFLVGYLIGLPVRSYSANAVANAVQFWPLADSNAG 189          
BLAST of mRNA_P-wetherbeei_contig1614.3.1 vs. uniprot
Match: W7TKF4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKF4_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.020e-38
Identity = 93/276 (33.70%), Postives = 149/276 (53.99%), Query Frame = 2
Query:  275 EMKVATGLRGDIVDQLGLNGRRDVDRIAAILGGLVVGSFLGSSAVIQALPGPDIIRWTVSWSIAFLPYGFLSLGLAKPG-LLQAAVVWLQRLDGDFRERLLRHEAGHFLMGHLCGLPVQEYQADAVTNAVQF---------------YPLSDSSAGGSL---------------WRRRG-LSHDDVTRLAIVSLGGIVAECAAYGNSEGGYADLSQLQEFVRMAEPPLTDREQQERVRFAAVMAHTYLKTHDAPFEALLAAFRRKASVAECMKALE 1006
            +++V   +R  +   LG      V+R+ + +  ++  S   +   +  LPGPDI+RW  +  +  +P+ ++SLGL+ P  L++AA   L  L+ +++ERLLRHEAGHFL+G+LCGLPV  Y      NAV+F                P   S  G ++               W  RG L  +++ RL +VSL G+V+E  AYG +EGG  DLSQL     +A+P ++DREQ+  + +  + ++  ++ ++    AL+AAF R  SV  CM+ +E
Sbjct:  191 DLRVYARMRERVEKALGFTASPAVERVESGIAIVMALSITSALTTLDKLPGPDIVRWFATSFLVSIPFAYISLGLSFPEVLMRAANQVLFALNREYKERLLRHEAGHFLVGYLCGLPVLSYSVSGRLNAVEFAQILSFAQEAAAAATVPQDSSETGPAMLPSKSGPVSREEAERWTPRGVLLKEELARLTVVSLAGVVSEYIAYGKAEGGGNDLSQLLALFNLADPAMSDREQERWLNWGVLQSYNMIRQNEKALVALMAAFERGESVVTCMQIVE 466          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1614.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0R4_9STRA6.390e-9561.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D6I6_HETAK6.190e-6940.30Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S0XV52_HEMAN1.900e-5041.49Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0V097_9CRYP1.370e-4639.86Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S4KRX3_GUITH4.030e-4637.67Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
A0A5J4YTJ7_PORPP1.200e-4439.07Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A7S3AC95_9RHOD1.560e-4238.69Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A7S2G7P9_9STRA6.260e-4238.79Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S2SMI0_9STRA7.070e-4049.44Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
W7TKF4_9STRA1.020e-3833.70Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1614contigP-wetherbeei_contig1614:4966..6891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr47423
Model size1471
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.53e-41
EggNOG OGs2D23T@1|root,2SKBP@2759|Eukaryota,2XCVB@2836|Bacillariophyta
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001660.1
Cds size840
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186078.277038-UTR-P-wetherbeei_contig1614:4965..51641683186078.277038-UTR-P-wetherbeei_contig1614:4965..5164Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1614 4966..5164 +
1683186078.3105216-UTR-P-wetherbeei_contig1614:6459..68911683186078.3105216-UTR-P-wetherbeei_contig1614:6459..6891Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1614 6460..6891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186078.2855365-CDS-P-wetherbeei_contig1614:5164..52331683186078.2855365-CDS-P-wetherbeei_contig1614:5164..5233Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1614 5165..5233 +
1683186078.2929213-CDS-P-wetherbeei_contig1614:5492..58271683186078.2929213-CDS-P-wetherbeei_contig1614:5492..5827Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1614 5493..5827 +
1683186078.301347-CDS-P-wetherbeei_contig1614:6023..64591683186078.301347-CDS-P-wetherbeei_contig1614:6023..6459Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1614 6024..6459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1614.3.1prot_P-wetherbeei_contig1614.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1614 5165..6459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1614.3.1

>prot_P-wetherbeei_contig1614.3.1 ID=prot_P-wetherbeei_contig1614.3.1|Name=mRNA_P-wetherbeei_contig1614.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=280bp
MSALAALKEDGQLSLYNSSNPFYLAEMKVATGLRGDIVDQLGLNGRRDVD
RIAAILGGLVVGSFLGSSAVIQALPGPDIIRWTVSWSIAFLPYGFLSLGL
AKPGLLQAAVVWLQRLDGDFRERLLRHEAGHFLMGHLCGLPVQEYQADAV
TNAVQFYPLSDSSAGGSLWRRRGLSHDDVTRLAIVSLGGIVAECAAYGNS
EGGYADLSQLQEFVRMAEPPLTDREQQERVRFAAVMAHTYLKTHDAPFEA
LLAAFRRKASVAECMKALEDVAAAGRAAS*
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mRNA from alignment at P-wetherbeei_contig1614:4966..6891+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1614.3.1 ID=mRNA_P-wetherbeei_contig1614.3.1|Name=mRNA_P-wetherbeei_contig1614.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1926bp|location=Sequence derived from alignment at P-wetherbeei_contig1614:4966..6891+ (Phaeothamnion wetherbeei SAG_119_79)
TGTGTGGTTGGCCACCTTTTTCGTCGCGAGCGCCTTCTGTCCTTCGACCA AGATTGTTCGTTTTAGCCACCTCAATACTGCGTCAACGCCAACACGTGAA GCGGCGCTCCAGAGGGGATCACGCCCGCCTTCTGCTGCACCCTTGTCGAC CTATGAGGCGGCTCTCAAGGAAGGAGAGGCGCAGAACGGCAAGGCGGTGA TGTCGGCCCTCGCTGCTCTGAAGGAGGACGGCCAGCTTTCGCTTTACAAC TCGTCGAATCCGTTTTACGTACGATACACGGTTAGTGAGGGGGTTCCTTT TTTATCCTCGGTCTTCTTCTCTTTCCCCTCTACCACGTTACTCTTCGTAT TATGCTAATATCGCTCTTTTTGGCCAGGGAAAAGCGGTTATCGCATAGTT TCTTCTCTATGAGCTAGGTTTACCTCTTAAGCCCGCTATGCAGCAGTCGA AAGATTTCCCTTTCCCCGGGGCGAACGCCTTCTTCGATTTCACTTCGTTG GCACTGCCAAACAACACACGCTTGCAGCTCGCGGAGATGAAGGTCGCCAC GGGCTTGCGAGGAGACATCGTCGATCAACTCGGATTGAACGGCCGCCGCG ACGTCGACCGAATCGCCGCCATTCTGGGCGGTCTGGTCGTCGGCTCCTTT CTCGGCTCCTCCGCCGTCATCCAGGCTCTGCCAGGCCCCGACATCATCCG GTGGACGGTTTCCTGGAGCATTGCTTTCTTGCCGTACGGCTTTCTGTCGT TAGGGCTGGCCAAGCCGGGCCTGCTGCAGGCAGCGGTGGTGTGGCTGCAG CGCCTCGACGGCGACTTTCGGGAGCGGCTGCTCAGGCACGAGGCCGGTCA CTTCTTGATGGGGTGCGTTTTGTTCGTCCTGTCGTCCTCCCTACGTTTCC CCCAGCAGATTTTGTTTTAATATACGAACCTTTTCCAGAATGCTAGTCTT CTTTTCACTCTTTCGGCCCGTTTTCTTTCATATACTCGCAAAACTGGCGA ACGCCCATCTCCCCATTTTCCCTTTTGCTCGCCTTCCCGCCCCAAAACGT CCTTGCAGGCATTTGTGTGGCTTGCCTGTGCAGGAATACCAAGCAGACGC CGTTACCAACGCCGTCCAATTCTACCCACTCTCCGACAGCAGCGCCGGCG GAAGTCTCTGGCGGCGGCGGGGGCTGTCGCACGACGACGTCACCCGGTTG GCGATCGTGTCGCTCGGCGGCATCGTCGCCGAATGCGCGGCCTACGGCAA CTCGGAGGGCGGTTATGCCGACCTCTCGCAGCTGCAGGAGTTCGTTCGCA TGGCAGAGCCACCGCTGACGGATCGGGAGCAGCAGGAGCGAGTTCGCTTC GCGGCCGTCATGGCACACACGTATTTGAAGACGCACGATGCACCGTTCGA GGCGCTGCTGGCGGCGTTTCGGCGCAAGGCATCCGTCGCAGAATGCATGA AGGCGTTGGAAGACGTCGCCGCCGCCGGGAGGGCGGCTTCATGAGATGTC CCGCGTTCGTTCCTTCGCGGCAGGGCTTGAAGATTCTTCTGCGGTTTCGA TAATGCAACTGGGTGTCACGTAGAATTGCTAGCGGTGGGGTCGGCTCACG CCGACAACGAATTGAACACGTCACAGAAGGAAGAGGCCTTCCTACGGTGC GCGGTGTGCCTCTTGTCGGAAAAACCGTTTCTGGAGGTGCTGGCCGGGCA CGCAGCCCTTACAGTTTTTCCCTTCAATTACAGCTCCTGGCTGAGTGTCT TACGGAAGGGGTTGAGATAGGGGTGCCAACTAACCGCCCAATGCGGTCCC TCTCAAATTTCAAATTCCGCCCGTTCTTTCTTTCACAGGTGGTTAGATTC CGTAGACCAACACGTCAACTTTCGTATCCGGGGGCGGGGGGGCTTCCCAG GGGGTGGAAACGTCATCCGGGCACAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1614:4966..6891+

>mRNA_P-wetherbeei_contig1614.3.1 ID=mRNA_P-wetherbeei_contig1614.3.1|Name=mRNA_P-wetherbeei_contig1614.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=840bp|location=Sequence derived from alignment at P-wetherbeei_contig1614:4966..6891+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGCCCTCGCTGCTCTGAAGGAGGACGGCCAGCTTTCGCTTTACAA
CTCGTCGAATCCGTTTTACCTCGCGGAGATGAAGGTCGCCACGGGCTTGC
GAGGAGACATCGTCGATCAACTCGGATTGAACGGCCGCCGCGACGTCGAC
CGAATCGCCGCCATTCTGGGCGGTCTGGTCGTCGGCTCCTTTCTCGGCTC
CTCCGCCGTCATCCAGGCTCTGCCAGGCCCCGACATCATCCGGTGGACGG
TTTCCTGGAGCATTGCTTTCTTGCCGTACGGCTTTCTGTCGTTAGGGCTG
GCCAAGCCGGGCCTGCTGCAGGCAGCGGTGGTGTGGCTGCAGCGCCTCGA
CGGCGACTTTCGGGAGCGGCTGCTCAGGCACGAGGCCGGTCACTTCTTGA
TGGGGCATTTGTGTGGCTTGCCTGTGCAGGAATACCAAGCAGACGCCGTT
ACCAACGCCGTCCAATTCTACCCACTCTCCGACAGCAGCGCCGGCGGAAG
TCTCTGGCGGCGGCGGGGGCTGTCGCACGACGACGTCACCCGGTTGGCGA
TCGTGTCGCTCGGCGGCATCGTCGCCGAATGCGCGGCCTACGGCAACTCG
GAGGGCGGTTATGCCGACCTCTCGCAGCTGCAGGAGTTCGTTCGCATGGC
AGAGCCACCGCTGACGGATCGGGAGCAGCAGGAGCGAGTTCGCTTCGCGG
CCGTCATGGCACACACGTATTTGAAGACGCACGATGCACCGTTCGAGGCG
CTGCTGGCGGCGTTTCGGCGCAAGGCATCCGTCGCAGAATGCATGAAGGC
GTTGGAAGACGTCGCCGCCGCCGGGAGGGCGGCTTCATGA
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