mRNA_P-wetherbeei_contig1612.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1612.1.1
Unique NamemRNA_P-wetherbeei_contig1612.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1612.1.1 vs. uniprot
Match: A0A445H4S7_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445H4S7_GLYSO)

HSP 1 Score: 144 bits (364), Expect = 1.190e-36
Identity = 72/186 (38.71%), Postives = 106/186 (56.99%), Query Frame = 1 
Query:    4 LWHQHLGHPGDHVLARLMSDNNTR-VPRLDFDLRQFCEACVMGTSHRTNTNTSAQQRALSRLELVHSDTFGPLPFRSRAGNRYAIVFVDDSTRMRWIYFMRSTTEVLGCLKQFRIDAEAKGGATIRRFRADCGPEYRAQSFRGACRERGIALEFSAPYTQSMNGVAKRSWRSLVERARCMLEASGL 558
            LWHQ  GH   H L  L   N  R +P +  +  + CE C++G  HR   +TS   RA   LEL+H+D  GP+   S   NRY I+F+DD +RM W+YF++  +EV G  K+F+  AE + G  I+  R+D   EY ++ F   C + GI  + +  Y+   NGV++R  R+++E AR ML+  GL
Sbjct:  400 LWHQRFGHFNSHALKLLHEKNMMRDLPSIK-ENNEMCEGCLLGKQHRFPFSTSGAWRAKDLLELIHTDVCGPMRTPSHGNNRYFILFIDDFSRMTWVYFLKEKSEVFGVFKKFKALAENQSGKRIKVLRSDRDKEYTSREFERFCEDEGIERQLTVAYSPQQNGVSERKNRTIMEMARSMLKEKGL 584
[Close]
BLAST of mRNA_P-wetherbeei_contig1612.1.1 vs. uniprot
Match: A0A151RAI6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RAI6_CAJCA)

HSP 1 Score: 143 bits (360), Expect = 2.940e-36
Identity = 72/186 (38.71%), Postives = 108/186 (58.06%), Query Frame = 1 
Query:    4 LWHQHLGHPGDHVLARLMSDNNTR-VPRLDFDLRQFCEACVMGTSHRTNTNTSAQQRALSRLELVHSDTFGPLPFRSRAGNRYAIVFVDDSTRMRWIYFMRSTTEVLGCLKQFRIDAEAKGGATIRRFRADCGPEYRAQSFRGACRERGIALEFSAPYTQSMNGVAKRSWRSLVERARCMLEASGL 558
            LWH+  GH   H L  L      R +P L  +  + CE C++G  HR   +TS   RA + LEL+H+D  GP+   S   NRY I+F+DD ++M W+YF+++ +EV G  K+F+   E + G  I+ FR+D G EY ++ F   C + GI  + +  YT   NGV++R  R+++E AR ML+  GL
Sbjct:  429 LWHRRFGHFNIHALKLLHQKGMMRDLPTLK-ENNEACEGCLLGKQHRLPFSTSKAWRAKNLLELIHTDVCGPMRTPSHTNNRYFILFIDDFSKMTWVYFLKTKSEVFGIFKKFKALVEKQSGKQIKVFRSDRGKEYTSREFDKFCEDEGIEQQLTVAYTPQKNGVSERKNRTVMEMARSMLKEKGL 613
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BLAST of mRNA_P-wetherbeei_contig1612.1.1 vs. uniprot
Match: A0A8J6D4G9_9ROSI (Integrase catalytic domain-containing protein n=3 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D4G9_9ROSI)

HSP 1 Score: 142 bits (358), Expect = 6.760e-36
Identity = 72/181 (39.78%), Postives = 103/181 (56.91%), Query Frame = 1 
Query:    1 QLWHQHLGHPGDHVLARLMSDNNTRVPRLDFDLRQFCEACVMGTSHRTNTNTSAQQRALSRLELVHSDTFGPLPFRSRAGNRYAIVFVDDSTRMRWIYFMRSTTEVLGCLKQFRIDAEAKGGATIRRFRADCGPEYRAQSFRGACRERGIALEFSAPYTQSMNGVAKRSWRSLVERARCML 543
            +LWHQ LGH     +AR++S + T            CE C +G   R    T+   RA  +L+LVH+D  GP+   S  G+RY I+F+DDSTR  WIYF++S TEV+    +F+  AE + G  +R  R+D G EY +  F+  C   GI  + +  YT   NGV++R  RSL++ ARCM+
Sbjct:  458 KLWHQRLGHANYRSMARMISKDMTENFIKSVQNEDVCEVCQLGKQARLPFPTNTAWRASEKLQLVHTDVCGPMKTESLNGSRYFILFIDDSTRYCWIYFLKSKTEVVQAFLKFKTAAETETGCKLRSIRSDNGTEYISAQFQDICARAGIKHQLTNVYTPQQNGVSERKNRSLLDMARCMI 638
[Close]
BLAST of mRNA_P-wetherbeei_contig1612.1.1 vs. uniprot
Match: A0A8J5Y992_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y992_9ROSI)

HSP 1 Score: 142 bits (357), Expect = 1.040e-35
Identity = 72/181 (39.78%), Postives = 100/181 (55.25%), Query Frame = 1 
Query:    1 QLWHQHLGHPGDHVLARLMSDNNTRVPRLDFDLRQFCEACVMGTSHRTNTNTSAQQRALSRLELVHSDTFGPLPFRSRAGNRYAIVFVDDSTRMRWIYFMRSTTEVLGCLKQFRIDAEAKGGATIRRFRADCGPEYRAQSFRGACRERGIALEFSAPYTQSMNGVAKRSWRSLVERARCML 543
            +LWHQ LGH     +AR++S                CE C MG   R    T+   RA S+LELVHSD  GP+   S +GNRY I+F++DSTR  WIYF++  +EV     +F+   E + G  I+  R+D G EY +  F+  C + GI  + +  YT   NGV +R  RSL++ ARC+L
Sbjct:  399 KLWHQRLGHANFKSMARMVSKEMVENFTKSVQNENVCEVCQMGKQARLPFPTNTTWRASSKLELVHSDVCGPMRTESLSGNRYFILFINDSTRYCWIYFLKHKSEVAQVFMKFKAAVETETGCKIKTIRSDNGTEYTSAQFQAICNDAGIKHQLTNVYTSQQNGVCERKNRSLLDMARCLL 579
[Close]
BLAST of mRNA_P-wetherbeei_contig1612.1.1 vs. uniprot
Match: A0A151S4Q9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S4Q9_CAJCA)

HSP 1 Score: 138 bits (347), Expect = 3.160e-35
Identity = 66/186 (35.48%), Postives = 109/186 (58.60%), Query Frame = 1 
Query:    4 LWHQHLGHPGDHVLARLMSDNNTR-VPRLDFDLRQFCEACVMGTSHRTNTNTSAQQRALSRLELVHSDTFGPLPFRSRAGNRYAIVFVDDSTRMRWIYFMRSTTEVLGCLKQFRIDAEAKGGATIRRFRADCGPEYRAQSFRGACRERGIALEFSAPYTQSMNGVAKRSWRSLVERARCMLEASGL 558
            LWH+ LGH     L ++ S+   + +P ++ D+   C+ C  G   R      A  RA+ +L+L+H+D  GP+   S  GN+Y ++F+DD TRM W++F++  ++V    ++F+   E + G  I++ R+D G EY A  F+  C + GI  +F+ PYT   NGV++R  R+++E ARC+L   GL
Sbjct:  295 LWHKRLGHFSYSTLKKISSNGLIQNLPSIEDDV-DVCDVCQFGKQCRLPFPAVASWRAVEKLQLIHTDVCGPMSIASLNGNKYFLLFIDDFTRMSWVFFLKQKSDVFAAFQKFKTLVENEAGCQIKKLRSDNGTEYTAGEFKKFCDQAGIQHQFTVPYTPQKNGVSERKNRTVMEMARCLLFEKGL 479
[Close]
BLAST of mRNA_P-wetherbeei_contig1612.1.1 vs. uniprot
Match: A0A1J3I5V1_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3I5V1_NOCCA)

HSP 1 Score: 136 bits (343), Expect = 3.810e-35
Identity = 70/187 (37.43%), Postives = 109/187 (58.29%), Query Frame = 1 
Query:    1 QLWHQHLGHPGDHVLARLMSDNNTR-VPRLDFDLRQFCEACVMGTSHRTNTNTSAQQRALSRLELVHSDTFGPLPFRSRAGNRYAIVFVDDSTRMRWIYFMRSTTEVLGCLKQFRIDAEAKGGATIRRFRADCGPEYRAQSFRGACRERGIALEFSAPYTQSMNGVAKRSWRSLVERARCMLEASGL 558
            +LWHQ LGH G   L  L S N    +P+ + + ++ CE+C++    R +    ++ RA  +LEL+HSD  GP+   S  G+RY + F+DD+TRM W+YF+++ +EV    K+F+   E +    I++ R D G EY +  F     + GI  + +A Y+   NGV++R  RSLVE AR M++A  L
Sbjct:   75 ELWHQRLGHTGYSNLKILQSTNMVLGLPKFNVE-KEGCESCILSKHSRDSFPKESETRAKEKLELIHSDVCGPMQSLSIIGSRYFLTFIDDATRMVWVYFLKAKSEVFQTFKKFKNLVENQASCKIKKIRTDRGSEYLSGEFTKFLEDHGIERQLTATYSPQQNGVSERRNRSLVEMARAMIKAKDL 260
[Close]
BLAST of mRNA_P-wetherbeei_contig1612.1.1 vs. uniprot
Match: A0A2H9ZU53_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZU53_9ASPA)

HSP 1 Score: 137 bits (346), Expect = 4.340e-35
Identity = 74/186 (39.78%), Postives = 105/186 (56.45%), Query Frame = 1 
Query:    4 LWHQHLGHPGDHVLARLMSDNNT-RVPRLDFDLRQFCEACVMGTSHRTNTNTSAQQRALSRLELVHSDTFGPLPFRSRAGNRYAIVFVDDSTRMRWIYFMRSTTEVLGCLKQFRIDAEAKGGATIRRFRADCGPEYRAQSFRGACRERGIALEFSAPYTQSMNGVAKRSWRSLVERARCMLEASGL 558
            LWH   GH   + L  L   N    +P+++ DL   CE C+ G   R +       RA   LELV+SD  GP+   S +G+RY I+F+DD TRM W+YF+++ +E L   K F+   E + G  I+  R D G E+ +  F+  C E GI  E +APYT   NGVA+R  R++VE AR +L+A G+
Sbjct:  124 LWHFRYGHLHINGLKLLNQKNMVIGLPKIN-DLENICEECLYGKQSRKSFLIGRTCRATHPLELVYSDLCGPMRIESLSGSRYFILFIDDYTRMNWVYFLKNKSEALEAFKIFKAFVERQSGYFIKVLRTDRGGEFLSHEFKAFCEENGIHRELTAPYTPEQNGVAERKNRTIVEMARSLLKAKGI 308
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BLAST of mRNA_P-wetherbeei_contig1612.1.1 vs. uniprot
Match: A0A4Y1QXI5_PRUDU (Multidrug resistance-associated protein 9 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QXI5_PRUDU)

HSP 1 Score: 140 bits (352), Expect = 4.870e-35
Identity = 69/187 (36.90%), Postives = 104/187 (55.61%), Query Frame = 1 
Query:    1 QLWHQHLGHPGDHVLARLMSDNNTR-VPRLDFDLRQFCEACVMGTSHRTNTNTSAQQRALSRLELVHSDTFGPLPFRSRAGNRYAIVFVDDSTRMRWIYFMRSTTEVLGCLKQFRIDAEAKGGATIRRFRADCGPEYRAQSFRGACRERGIALEFSAPYTQSMNGVAKRSWRSLVERARCMLEASGL 558
            Q WH+ LGH  D  +  L + +    +P L+ DL   CE C +G  HR +    +  RA S LELVH+D  GP+   S + NRY ++F+DD TRM W+YF+R+ +    C K+F+   E + G  ++  R+D G E+ +  F   C E GI  + +  Y+   NGVA+R  R+++E A+ ML    L
Sbjct:  472 QTWHKRLGHLNDQSIKMLANQDMVHGLPSLEKDLA-VCEGCKLGKQHRDSFPAESTWRAQSPLELVHTDICGPMQIASMSENRYFLLFIDDYTRMAWVYFLRNKSNAFECFKKFKAMTELQSGHKVKSLRSDRGGEFMSNEFLAYCSEAGIQRQLTVAYSPQQNGVAERKNRTVIEMAKSMLHEKSL 657
[Close]
BLAST of mRNA_P-wetherbeei_contig1612.1.1 vs. uniprot
Match: A0A151R9Q4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R9Q4_CAJCA)

HSP 1 Score: 137 bits (346), Expect = 1.220e-34
Identity = 66/186 (35.48%), Postives = 108/186 (58.06%), Query Frame = 1 
Query:    4 LWHQHLGHPGDHVLARLMSDNNTR-VPRLDFDLRQFCEACVMGTSHRTNTNTSAQQRALSRLELVHSDTFGPLPFRSRAGNRYAIVFVDDSTRMRWIYFMRSTTEVLGCLKQFRIDAEAKGGATIRRFRADCGPEYRAQSFRGACRERGIALEFSAPYTQSMNGVAKRSWRSLVERARCMLEASGL 558
            LWH+ LGH     L ++ S+   + +P ++ D+   C+ C  G   R      A  RA+ +L+L+H+D  GP+   S  GN+Y ++F+DD TRM W++F++   +V    ++F+   E + G  I++ R+D G EY A  F+  C + GI  +F+ PYT   NGV++R  R+++E ARC+L   GL
Sbjct:  248 LWHKRLGHFSYSTLKKISSNGLIQNLPSIEDDV-DVCDVCQFGKQCRLPFPAVASWRAVEKLQLIHTDVCGPMSIASLNGNKYFLLFIDDFTRMSWVFFLKQKLDVFAAFQKFKTLVENEAGCQIKKLRSDNGTEYTAGEFKKFCDQAGIQHQFTVPYTPQQNGVSERKNRTVMEMARCLLFEKGL 432
[Close]
BLAST of mRNA_P-wetherbeei_contig1612.1.1 vs. uniprot
Match: A0A8J6DEL6_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6DEL6_9ROSI)

HSP 1 Score: 138 bits (347), Expect = 1.930e-34
Identity = 68/181 (37.57%), Postives = 101/181 (55.80%), Query Frame = 1 
Query:    1 QLWHQHLGHPGDHVLARLMSDNNTRVPRLDFDLRQFCEACVMGTSHRTNTNTSAQQRALSRLELVHSDTFGPLPFRSRAGNRYAIVFVDDSTRMRWIYFMRSTTEVLGCLKQFRIDAEAKGGATIRRFRADCGPEYRAQSFRGACRERGIALEFSAPYTQSMNGVAKRSWRSLVERARCML 543
            +LWHQ LGH   + +AR++S +              CE C +G   R    TS   RA  +L+LVH+D +GP+   S  GNRY I+F+DDSTR  WIYF+++ ++V+    +F+   E + G  ++  R D G EY +  F+  C   GI  + +  YT   NGV++R  RSL + ARCM+
Sbjct:  172 KLWHQRLGHANFNSMARMISKDMAENFIKSVQNEDVCEVCQLGKQARLPFPTSTAWRASEKLQLVHTDVYGPMKTESLNGNRYFILFIDDSTRYCWIYFLKNKSKVVQAFLKFKTATETETGCKLKSIRLDNGTEYTSAQFQAICARAGIKHQLTNVYTPQQNGVSERKNRSLQDMARCMI 352
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1612.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A445H4S7_GLYSO1.190e-3638.71Retrovirus-related Pol polyprotein from transposon... [more]
A0A151RAI6_CAJCA2.940e-3638.71Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J6D4G9_9ROSI6.760e-3639.78Integrase catalytic domain-containing protein n=3 ... [more]
A0A8J5Y992_9ROSI1.040e-3539.78Integrase catalytic domain-containing protein n=1 ... [more]
A0A151S4Q9_CAJCA3.160e-3535.48Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3I5V1_NOCCA3.810e-3537.43Retrovirus-related Pol polyprotein from transposon... [more]
A0A2H9ZU53_9ASPA4.340e-3539.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1QXI5_PRUDU4.870e-3536.90Multidrug resistance-associated protein 9 n=1 Tax=... [more]
A0A151R9Q4_CAJCA1.220e-3435.48Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J6DEL6_9ROSI1.930e-3437.57Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1612contigP-wetherbeei_contig1612:2..559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog225117.XP_009356290.1
PFAMsDUF4219,Retrotran_gag_2,gag_pre-integrs,zf-CCHC
Model size558
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.01e-34
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37ITA@33090|Viridiplantae,3GHQJ@35493|Streptophyta,4JTP0@91835|fabids
Descriptiongag-polypeptide of LTR copia-type
Cds size558
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186077.6018057-CDS-P-wetherbeei_contig1612:1..5591683186077.6018057-CDS-P-wetherbeei_contig1612:1..559Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1612 2..559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1612.1.1prot_P-wetherbeei_contig1612.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1612 2..559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1612.1.1

>prot_P-wetherbeei_contig1612.1.1 ID=prot_P-wetherbeei_contig1612.1.1|Name=mRNA_P-wetherbeei_contig1612.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
QLWHQHLGHPGDHVLARLMSDNNTRVPRLDFDLRQFCEACVMGTSHRTNT
NTSAQQRALSRLELVHSDTFGPLPFRSRAGNRYAIVFVDDSTRMRWIYFM
RSTTEVLGCLKQFRIDAEAKGGATIRRFRADCGPEYRAQSFRGACRERGI
ALEFSAPYTQSMNGVAKRSWRSLVERARCMLEASGL
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mRNA from alignment at P-wetherbeei_contig1612:2..559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1612.1.1 ID=mRNA_P-wetherbeei_contig1612.1.1|Name=mRNA_P-wetherbeei_contig1612.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig1612:2..559+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCTGTGGCATCAACACCTGGGGCATCCTGGTGACCACGTGCTGGCGCG
GCTCATGTCCGACAACAACACTCGAGTTCCACGACTGGATTTCGATCTAC
GACAATTCTGCGAAGCGTGCGTGATGGGCACGAGCCATCGCACGAACACC
AATACGTCGGCGCAGCAGCGAGCTTTATCACGCTTGGAGCTTGTGCACAG
CGACACCTTCGGTCCACTTCCTTTCCGATCAAGAGCAGGCAATCGCTATG
CCATCGTCTTCGTGGACGATTCGACAAGAATGCGCTGGATCTACTTCATG
CGCAGTACGACGGAGGTGCTCGGATGCCTCAAACAATTCCGCATCGATGC
TGAAGCCAAGGGCGGCGCAACCATCAGACGCTTCCGAGCCGATTGTGGAC
CCGAGTACAGGGCCCAAAGTTTCCGTGGCGCATGCCGGGAAAGAGGAATC
GCGCTGGAATTTTCAGCGCCGTATACGCAGTCAATGAACGGCGTGGCCAA
ACGAAGCTGGCGATCGCTCGTGGAGCGAGCCCGCTGCATGCTGGAGGCAT
CTGGCCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1612:2..559+

>mRNA_P-wetherbeei_contig1612.1.1 ID=mRNA_P-wetherbeei_contig1612.1.1|Name=mRNA_P-wetherbeei_contig1612.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig1612:2..559+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCTGTGGCATCAACACCTGGGGCATCCTGGTGACCACGTGCTGGCGCG
GCTCATGTCCGACAACAACACTCGAGTTCCACGACTGGATTTCGATCTAC
GACAATTCTGCGAAGCGTGCGTGATGGGCACGAGCCATCGCACGAACACC
AATACGTCGGCGCAGCAGCGAGCTTTATCACGCTTGGAGCTTGTGCACAG
CGACACCTTCGGTCCACTTCCTTTCCGATCAAGAGCAGGCAATCGCTATG
CCATCGTCTTCGTGGACGATTCGACAAGAATGCGCTGGATCTACTTCATG
CGCAGTACGACGGAGGTGCTCGGATGCCTCAAACAATTCCGCATCGATGC
TGAAGCCAAGGGCGGCGCAACCATCAGACGCTTCCGAGCCGATTGTGGAC
CCGAGTACAGGGCCCAAAGTTTCCGTGGCGCATGCCGGGAAAGAGGAATC
GCGCTGGAATTTTCAGCGCCGTATACGCAGTCAATGAACGGCGTGGCCAA
ACGAAGCTGGCGATCGCTCGTGGAGCGAGCCCGCTGCATGCTGGAGGCAT
CTGGCCTC
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