mRNA_P-wetherbeei_contig1610.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1610.3.1
Unique NamemRNA_P-wetherbeei_contig1610.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1610.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1610contigP-wetherbeei_contig1610:922..2184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size816
Hectar predicted targeting categoryother localisation
Exons4
Cds size807
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186077.1983306-CDS-P-wetherbeei_contig1610:921..10171683186077.1983306-CDS-P-wetherbeei_contig1610:921..1017Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1610 922..1017 -
1683186077.2061517-CDS-P-wetherbeei_contig1610:1185..15091683186077.2061517-CDS-P-wetherbeei_contig1610:1185..1509Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1610 1186..1509 -
1683186077.2168899-CDS-P-wetherbeei_contig1610:1719..20131683186077.2168899-CDS-P-wetherbeei_contig1610:1719..2013Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1610 1720..2013 -
1683186077.2254295-CDS-P-wetherbeei_contig1610:2082..21751683186077.2254295-CDS-P-wetherbeei_contig1610:2082..2175Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1610 2083..2175 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186077.2328544-UTR-P-wetherbeei_contig1610:2175..21841683186077.2328544-UTR-P-wetherbeei_contig1610:2175..2184Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1610 2176..2184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1610.3.1prot_P-wetherbeei_contig1610.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1610 922..2175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1610.3.1

>prot_P-wetherbeei_contig1610.3.1 ID=prot_P-wetherbeei_contig1610.3.1|Name=mRNA_P-wetherbeei_contig1610.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=269bp
MAQLDVERCAMDRTLRLHRAASARLLPTAAAHTAVPRQRNKSASAAQQRA
RQSLNGTRAVGSPLSLTGHRAELLPRGGDAEDSCSNGSSIGGDAQERPRT
VKHGIRRGETEAAATGLRPDSPIVAPSHDQRPPSRQRDAFPIHLAEILLP
PPRAAKKKPQPASAAAARKSAGEQARPPSRHKPPEHSLFLDLPFTAPPTA
SPVATTPLATTAAARTPKSSTVALAATTAVVAAAAKSTLDLRHDDPDRDG
FNVLEPEGPCPFRIRITNS
back to top

mRNA from alignment at P-wetherbeei_contig1610:922..2184-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1610.3.1 ID=mRNA_P-wetherbeei_contig1610.3.1|Name=mRNA_P-wetherbeei_contig1610.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1263bp|location=Sequence derived from alignment at P-wetherbeei_contig1610:922..2184- (Phaeothamnion wetherbeei SAG_119_79)
CCCGGCGATATGGCGCAGCTCGATGTGGAGCGATGTGCGATGGATCGGAC
GCTGCGTCTGCACCGCGCGGCCTCGGCGCGGCTCCTGCCGACGGCGGCGG
CGGTGGCATGCAATGCTGAGGCTGGCGGCAACAGCGCAGATGGCGGCTAC
GCCGGAAGCGGCTTCGGCGAGCATACCGCAGTTCCTCGCCAGCGCAACAA
GTCAGCCAGCGCCGCTCAGCAGCGCGCGCGTCAGTCACTGAATGGCACCA
GAGCTGTCGGGTCGCCACTGTCTCTCACCGGACACCGCGCGGAGCTGCTC
CCGCGCGGCGGCGATGCGGAAGACTCCTGCAGCAATGGCAGCAGCATCGG
CGGCGACGCGCAGGAGCGTCCACGAACTGTGAAACATGGCATCCGACGCG
GCGAAACTGAGGCGGCAGCAACTGGACTCAGGCCAGACTCACCGATCGTG
GCTCCAAGCCACGACGTTTTCGGCCGCCTCGGGAGCTTCAACCCGTGGTG
CAGCCGCCGGGCCGGCGGCGACAGGGGCGGCAGCAGCGGCACTGGCATCA
TCAGTGGCAGCAGCAGCGCCCTTGACCGCGACGCCAGCGGCAGCAGCCCA
AATATGGGCAATAGCGGCAGCGGCAAGAGCGGCGACGGCAGTCCATCGAC
CCGAGGCGCCGTGGTCACCCCAGAGCAGCGGCCGCCGTCGCGGCAGCGCG
ACGCTTTCCCCATCCACCTCGCAGAGATCTTGCTGCCGCCACCGCGTGCC
GCCAAGAAGAAGCCGCAGCCGGCGAGCGCCGCCGCCGCGCGCAAGTCTGC
CGGGGAACAGGCGCGCCCGCCATCGCGTCACAAGCCGCCGGAGCACAGCC
TCTTCCTGGACTTGCCTTTCACGGCGCCGCCTACTGCGTCGCCGGTGGCG
ACAACGCCGTTGGCGACGACGGCAGCCGCACGGACTCCCAAGTCATCGAC
GGTGGCGTTGGCGGCAACGACGGCGGTGGTAGCGGCGGCCGCAAAGAGCG
TGGCGGCTGCAAAGGCAGCTGCCGCCAACGCTACGGCAGCGGCAACATGC
ATTCCACTGCGCGCCGTCGCCGTCGCTGCCGACGACGATGACGACGACGG
CGTGCTGCTCTCCACAGCGGCGCTCGAGGGCGGCGGCGGGCTGGCCGCCG
CCTCTCCGGCGGGACAGACTTTGGACCTTCGCCACGACGATCCGGACCGC
GACGGATTCAACGTTCTCGAGCCGGAAGGACCGTGCCCGTTCCGGATTCG
CATCACCAACTCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1610:922..2184-

>mRNA_P-wetherbeei_contig1610.3.1 ID=mRNA_P-wetherbeei_contig1610.3.1|Name=mRNA_P-wetherbeei_contig1610.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=807bp|location=Sequence derived from alignment at P-wetherbeei_contig1610:922..2184- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCAGCTCGATGTGGAGCGATGTGCGATGGATCGGACGCTGCGTCT
GCACCGCGCGGCCTCGGCGCGGCTCCTGCCGACGGCGGCGGCGCATACCG
CAGTTCCTCGCCAGCGCAACAAGTCAGCCAGCGCCGCTCAGCAGCGCGCG
CGTCAGTCACTGAATGGCACCAGAGCTGTCGGGTCGCCACTGTCTCTCAC
CGGACACCGCGCGGAGCTGCTCCCGCGCGGCGGCGATGCGGAAGACTCCT
GCAGCAATGGCAGCAGCATCGGCGGCGACGCGCAGGAGCGTCCACGAACT
GTGAAACATGGCATCCGACGCGGCGAAACTGAGGCGGCAGCAACTGGACT
CAGGCCAGACTCACCGATCGTGGCTCCAAGCCACGACCAGCGGCCGCCGT
CGCGGCAGCGCGACGCTTTCCCCATCCACCTCGCAGAGATCTTGCTGCCG
CCACCGCGTGCCGCCAAGAAGAAGCCGCAGCCGGCGAGCGCCGCCGCCGC
GCGCAAGTCTGCCGGGGAACAGGCGCGCCCGCCATCGCGTCACAAGCCGC
CGGAGCACAGCCTCTTCCTGGACTTGCCTTTCACGGCGCCGCCTACTGCG
TCGCCGGTGGCGACAACGCCGTTGGCGACGACGGCAGCCGCACGGACTCC
CAAGTCATCGACGGTGGCGTTGGCGGCAACGACGGCGGTGGTAGCGGCGG
CCGCAAAGAGCACTTTGGACCTTCGCCACGACGATCCGGACCGCGACGGA
TTCAACGTTCTCGAGCCGGAAGGACCGTGCCCGTTCCGGATTCGCATCAC
CAACTCG
back to top