mRNA_P-wetherbeei_contig1610.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1610.4.1
Unique NamemRNA_P-wetherbeei_contig1610.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1610.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1610contigP-wetherbeei_contig1610:2194..2943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size435
Hectar predicted targeting categoryother localisation
Exons2
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186077.1412954-CDS-P-wetherbeei_contig1610:2193..22981683186077.1412954-CDS-P-wetherbeei_contig1610:2193..2298Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1610 2194..2298 -
1683186077.1494339-CDS-P-wetherbeei_contig1610:2613..29431683186077.1494339-CDS-P-wetherbeei_contig1610:2613..2943Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1610 2614..2943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1610.4.1prot_P-wetherbeei_contig1610.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1610 2194..2943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1610.4.1

>prot_P-wetherbeei_contig1610.4.1 ID=prot_P-wetherbeei_contig1610.4.1|Name=mRNA_P-wetherbeei_contig1610.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
PPHTADGHGVGGYGGGDGAVGAAPGPVPATTAASVLRTLLTEEHKGHLRA
VAGEHLLSASRSEPRLMKHGSNAHAGTTTTAAAASAVAVPTAATAAATAA
AAATSATAGADTAAAAAAAAAAAAAAAAAVAAAGEWATAVRPAPA
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mRNA from alignment at P-wetherbeei_contig1610:2194..2943-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1610.4.1 ID=mRNA_P-wetherbeei_contig1610.4.1|Name=mRNA_P-wetherbeei_contig1610.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=750bp|location=Sequence derived from alignment at P-wetherbeei_contig1610:2194..2943- (Phaeothamnion wetherbeei SAG_119_79)
CCACCTCATACCGCCGACGGCCACGGTGTCGGCGGGTATGGCGGGGGCGA
CGGCGCCGTTGGTGCTGCACCAGGGCCGGTGCCAGCCACGACCGCGGCCA
GCGTGCTTCGGACGCTGCTCACGGAAGAGCACAAGGGCCATCTCCGGGCG
GTGGCCGGCGAGCACCTGCTGTCAGCGTCGCGGTCCGAGCCGCGGCTCAT
GAAGCACGGGTCCAACGCGCACGCCGGCACCACGACAACGGCGGCGGCTG
CCTCGGCAGTAGCAGTGCCAACAGCAGCAACTGCGGCGGCAACGGCGGCG
GCGGCTGCAACTTCGGCAACGGCAGGAGCAGTCTCCCGGACATTTGTCGT
GTCACCCGGCGCCATCGAGGTATTGCCGGGGCCCCTGCTGGCCATTCCGC
GGGCGGCACCGGGCGCCGCCGCAGCCTCGCCATCGCCATGGAGCCGCGGT
GGCGCCTTGGACACGCCGGCCCCCGTCGTCGCGCCGTCGCATGGGGAGAG
ACTCCGGACTCCGGTGGCGACGGCGGTGGCGGCAACGGCGTTGCCGGTGC
ATAAAGTTTCCGGAGTCGACGCATGGCTGTCGCTCCGTTCTTCACTTCTC
TGGCGCCCAGCGGTAGCAACGGCAGCTGCCAGCGCCGGCGAAGAGGATAC
CGCTGCCGCTGCCGCCGCTGCAGCAGCCGCCGCTGCTGCTGCAGCCGCAG
CGGTCGCCGCCGCCGGCGAGTGGGCGACGGCGGTGCGGCCGGCGCCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1610:2194..2943-

>mRNA_P-wetherbeei_contig1610.4.1 ID=mRNA_P-wetherbeei_contig1610.4.1|Name=mRNA_P-wetherbeei_contig1610.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig1610:2194..2943- (Phaeothamnion wetherbeei SAG_119_79)
CCACCTCATACCGCCGACGGCCACGGTGTCGGCGGGTATGGCGGGGGCGA
CGGCGCCGTTGGTGCTGCACCAGGGCCGGTGCCAGCCACGACCGCGGCCA
GCGTGCTTCGGACGCTGCTCACGGAAGAGCACAAGGGCCATCTCCGGGCG
GTGGCCGGCGAGCACCTGCTGTCAGCGTCGCGGTCCGAGCCGCGGCTCAT
GAAGCACGGGTCCAACGCGCACGCCGGCACCACGACAACGGCGGCGGCTG
CCTCGGCAGTAGCAGTGCCAACAGCAGCAACTGCGGCGGCAACGGCGGCG
GCGGCTGCAACTTCGGCAACGGCAGGAGCAGATACCGCTGCCGCTGCCGC
CGCTGCAGCAGCCGCCGCTGCTGCTGCAGCCGCAGCGGTCGCCGCCGCCG
GCGAGTGGGCGACGGCGGTGCGGCCGGCGCCGGCG
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