mRNA_P-wetherbeei_contig16082.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16082.1.1
Unique NamemRNA_P-wetherbeei_contig16082.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16082.1.1 vs. uniprot
Match: A0A1H8WWK8_9PROT (Rod shape-determining protein MreD n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H8WWK8_9PROT)

HSP 1 Score: 328 bits (841), Expect = 6.710e-113
Identity = 171/189 (90.48%), Postives = 179/189 (94.71%), Query Frame = 1
Query:    1 MRADGFLAMLDRWGRWALPGAVLLFFVLLTLAPLRAPYLSGALPLLPALVVFQFSLATPERLPGPLLLAMGILLDLLLGGPGAPVGVSALGFVLIRAAVVNNRRYLVGVPFLFQWAGFCILALGFVILMWFFTALWTWTAIDPVPALMQYAVVIVIYPLLAPLLARVRARDPLNVPDESRGTARPGETT 567
            M+ADG LA+LDRWGR  LPGAVLLFFVLLTLAPLRAPYLS ALPLLPALVVFQFSLATPERLPGPLLLAMGILLDLLLGGPGAPVGVSALGFVLIRAAVV NRRYLVGVPFLFQW GFC+LALGFVIL+W FTALWTWTAIDPVPAL+QY VV+VIYPL+AP LARVRARDPLNVP+ SRGTARPGETT
Sbjct:    1 MKADGLLAVLDRWGRATLPGAVLLFFVLLTLAPLRAPYLSDALPLLPALVVFQFSLATPERLPGPLLLAMGILLDLLLGGPGAPVGVSALGFVLIRAAVVANRRYLVGVPFLFQWFGFCLLALGFVILVWGFTALWTWTAIDPVPALIQYVVVVVIYPLIAPWLARVRARDPLNVPEPSRGTARPGETT 189          
BLAST of mRNA_P-wetherbeei_contig16082.1.1 vs. uniprot
Match: A0A521QW27_9HYPH (Uncharacterized protein n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A521QW27_9HYPH)

HSP 1 Score: 319 bits (818), Expect = 2.150e-109
Identity = 167/189 (88.36%), Postives = 173/189 (91.53%), Query Frame = 1
Query:    1 MRADGFLAMLDRWGRWALPGAVLLFFVLLTLAPLRAPYLSGALPLLPALVVFQFSLATPERLPGPLLLAMGILLDLLLGGPGAPVGVSALGFVLIRAAVVNNRRYLVGVPFLFQWAGFCILALGFVILMWFFTALWTWTAIDPVPALMQYAVVIVIYPLLAPLLARVRARDPLNVPDESRGTARPGETT 567
            MRADG LA LDRWGR ALPG+VLLFFVLLTLAPLRAPYLS  LPLLPALVVFQFSLATPERLPGPLLLAMG+LLDLLLGGPGAPVGVSALGFVLIRAAVV NRRYLVGVPFLFQW GFCIL  GFV+L+W FT LWTWTAIDPVPA+ QY VV V YPLLAPLLARVRARDPLNVP+ SRGTARPGETT
Sbjct:    1 MRADGVLAGLDRWGRAALPGSVLLFFVLLTLAPLRAPYLSDTLPLLPALVVFQFSLATPERLPGPLLLAMGVLLDLLLGGPGAPVGVSALGFVLIRAAVVANRRYLVGVPFLFQWIGFCILMFGFVVLVWAFTTLWTWTAIDPVPAIKQYLVVAVFYPLLAPLLARVRARDPLNVPELSRGTARPGETT 189          
BLAST of mRNA_P-wetherbeei_contig16082.1.1 vs. uniprot
Match: A0A6N7A6W7_9PROT (Cell shape-determining protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6N7A6W7_9PROT)

HSP 1 Score: 315 bits (807), Expect = 1.020e-107
Identity = 162/189 (85.71%), Postives = 174/189 (92.06%), Query Frame = 1
Query:    1 MRADGFLAMLDRWGRWALPGAVLLFFVLLTLAPLRAPYLSGALPLLPALVVFQFSLATPERLPGPLLLAMGILLDLLLGGPGAPVGVSALGFVLIRAAVVNNRRYLVGVPFLFQWAGFCILALGFVILMWFFTALWTWTAIDPVPALMQYAVVIVIYPLLAPLLARVRARDPLNVPDESRGTARPGETT 567
            MRADG LA+LDRWGR ALPG VLLFFVLLTLAPLRAPYLS  LPLLP LVVFQFSLATPERLPGPLLLA+GILLDLLLGGPGAPVGVSALGFVL+RAAV+ NRRYLVGVPFLFQWAGFCIL+ GFV L+W FT LWTW  IDPVPA++QY VV+VIYPL+APLLARVRARDPLNVP+ SRG+ARPGETT
Sbjct:    1 MRADGTLAILDRWGRAALPGTVLLFFVLLTLAPLRAPYLSDTLPLLPVLVVFQFSLATPERLPGPLLLALGILLDLLLGGPGAPVGVSALGFVLVRAAVMANRRYLVGVPFLFQWAGFCILSWGFVALVWAFTTLWTWAPIDPVPAILQYVVVVVIYPLIAPLLARVRARDPLNVPELSRGSARPGETT 189          
BLAST of mRNA_P-wetherbeei_contig16082.1.1 vs. uniprot
Match: A0A259MQZ9_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium 39-66-50 TaxID=1970570 RepID=A0A259MQZ9_9PROT)

HSP 1 Score: 310 bits (794), Expect = 9.740e-106
Identity = 159/189 (84.13%), Postives = 172/189 (91.01%), Query Frame = 1
Query:    1 MRADGFLAMLDRWGRWALPGAVLLFFVLLTLAPLRAPYLSGALPLLPALVVFQFSLATPERLPGPLLLAMGILLDLLLGGPGAPVGVSALGFVLIRAAVVNNRRYLVGVPFLFQWAGFCILALGFVILMWFFTALWTWTAIDPVPALMQYAVVIVIYPLLAPLLARVRARDPLNVPDESRGTARPGETT 567
            MRAD  LA+LDRWGR ALPG VLLFFVLLTLAPLRAPYLS ALPLLP LVVFQFSLATPERLPGPLL+ MGILLDLLLGGPGAPVG+SALGF+L+RAAV+ NRRYLVGVPFLFQW GFCIL  G+V L+W FT LW WTAIDPVPA++QY VVIVIYPLLAPLLARVRARDPLNVP+ SRG+ARPGET+
Sbjct:    1 MRADSTLAILDRWGRAALPGTVLLFFVLLTLAPLRAPYLSDALPLLPILVVFQFSLATPERLPGPLLVLMGILLDLLLGGPGAPVGISALGFILVRAAVIGNRRYLVGVPFLFQWIGFCILCWGYVALVWAFTTLWMWTAIDPVPAMLQYIVVIVIYPLLAPLLARVRARDPLNVPELSRGSARPGETS 189          
BLAST of mRNA_P-wetherbeei_contig16082.1.1 vs. uniprot
Match: UPI001E436E17 (hypothetical protein n=2 Tax=Reyranella TaxID=445219 RepID=UPI001E436E17)

HSP 1 Score: 310 bits (794), Expect = 9.740e-106
Identity = 160/189 (84.66%), Postives = 171/189 (90.48%), Query Frame = 1
Query:    1 MRADGFLAMLDRWGRWALPGAVLLFFVLLTLAPLRAPYLSGALPLLPALVVFQFSLATPERLPGPLLLAMGILLDLLLGGPGAPVGVSALGFVLIRAAVVNNRRYLVGVPFLFQWAGFCILALGFVILMWFFTALWTWTAIDPVPALMQYAVVIVIYPLLAPLLARVRARDPLNVPDESRGTARPGETT 567
            MR DG LA+LDRWGR ALPG VLLFFVLLTLAPLRAPY+S ALPLLPALVVFQFSLATPERLPGPLLLA+G+LLDLLLGGPGAPVG+SALGFVLIRAAVV NRRYLVGVPFLFQW GFCI+  GFV L+W FT LWTW  IDPVPA++QY VVIVIYPLLAPLLARVRARDPLN+P+ SRG AR GETT
Sbjct:    1 MRTDGTLALLDRWGRAALPGTVLLFFVLLTLAPLRAPYISDALPLLPALVVFQFSLATPERLPGPLLLALGVLLDLLLGGPGAPVGISALGFVLIRAAVVANRRYLVGVPFLFQWIGFCIVCWGFVALVWAFTTLWTWAPIDPVPAMLQYVVVIVIYPLLAPLLARVRARDPLNIPELSRGGARTGETT 189          
BLAST of mRNA_P-wetherbeei_contig16082.1.1 vs. uniprot
Match: A0A1T4T0H9_9HYPH (Uncharacterized protein n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4T0H9_9HYPH)

HSP 1 Score: 305 bits (782), Expect = 6.560e-104
Identity = 157/189 (83.07%), Postives = 171/189 (90.48%), Query Frame = 1
Query:    1 MRADGFLAMLDRWGRWALPGAVLLFFVLLTLAPLRAPYLSGALPLLPALVVFQFSLATPERLPGPLLLAMGILLDLLLGGPGAPVGVSALGFVLIRAAVVNNRRYLVGVPFLFQWAGFCILALGFVILMWFFTALWTWTAIDPVPALMQYAVVIVIYPLLAPLLARVRARDPLNVPDESRGTARPGETT 567
            MRADGF+A LD  GR  LPG +LLFFV+LTLAPLR PYLS  LPLLPALVVFQFSLATPERLPGP LLAMG+LLDLLLGGPGAPVG+SALGFVLIRAAVV NRRYLVGVPFLFQW GFC+L   F++L+W FTALWTWTAIDPVPA+MQYAVVIVIYPLLAP+LARVR RDPLNVP+ +RGTARPGET+
Sbjct:    1 MRADGFIARLDDLGRLVLPGLILLFFVILTLAPLRVPYLSDTLPLLPALVVFQFSLATPERLPGPFLLAMGVLLDLLLGGPGAPVGISALGFVLIRAAVVANRRYLVGVPFLFQWIGFCLLEWLFMVLVWGFTALWTWTAIDPVPAMMQYAVVIVIYPLLAPILARVRPRDPLNVPEPARGTARPGETS 189          
BLAST of mRNA_P-wetherbeei_contig16082.1.1 vs. uniprot
Match: A0A5C8PQT1_9HYPH (Uncharacterized protein n=1 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PQT1_9HYPH)

HSP 1 Score: 155 bits (391), Expect = 1.170e-44
Identity = 86/171 (50.29%), Postives = 110/171 (64.33%), Query Frame = 1
Query:   16 FLAMLDRWGRWALPGAVLLFFVLLTLAPLRAPYLSGALPLLPALVVFQFSLATPERLPGPLLLAMGILLDLLLGGPGAPVGVSALGFVLIRAAVVNNRRYLVGVPFLFQWAGFCILALGFVILMWFFTALWTWTAIDPVPALMQYAVVIVIYPLLAPLLARVRARDPLNVP 528
            FL  LDR    ALPGA++   +LLTLAP+R P +  A PLLP + V+ F L   + LP  LL  +G+L DLL GGPGAPVG+SAL F+L+R  ++ N++YLV V F F W G+ IL+   V L W+  AL TW  IDP PA  QY V + +YP+   +L R R RDPLN P
Sbjct:    4 FLHQLDRALYAALPGALVSLLILLTLAPIRLPDVMSAAPLLPLMAVYHFCLFRADALPAWLLFVLGMLFDLLQGGPGAPVGISALQFLLVRQVILGNQKYLVSVSFTFIWLGYAILSAAAVTLSWWVAALLTWRWIDPQPAFFQYIVSLFLYPIFGWVLGRGRNRDPLNAP 174          
BLAST of mRNA_P-wetherbeei_contig16082.1.1 vs. uniprot
Match: A0A537NL62_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NL62_9PROT)

HSP 1 Score: 151 bits (382), Expect = 2.030e-44
Identity = 79/94 (84.04%), Postives = 82/94 (87.23%), Query Frame = 1
Query:    1 MRADGFLAMLDRWGRWALPGAVLLFFVLLTLAPLRAPYLSGALPLLPALVVFQFSLATPERLPGPLLLAMGILLDLLLGGPGAPVGVSALGFVL 282
            MRADG LAMLDRWGR   PG VLL FVLLT APLR PY++  LPLLPAL VFQFSLATPERLPGPLLLAMG+LLDLLLGGPG PVGVSALGFVL
Sbjct:    1 MRADGVLAMLDRWGRLLTPGTVLLLFVLLTFAPLRVPYVADLLPLLPALAVFQFSLATPERLPGPLLLAMGVLLDLLLGGPGGPVGVSALGFVL 94          
BLAST of mRNA_P-wetherbeei_contig16082.1.1 vs. uniprot
Match: A0A5C5TM25_9HYPH (Uncharacterized protein n=1 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5TM25_9HYPH)

HSP 1 Score: 139 bits (349), Expect = 2.580e-38
Identity = 80/169 (47.34%), Postives = 104/169 (61.54%), Query Frame = 1
Query:   16 FLAMLDRWGRWALPGAVLLFFVLLTLAPLRAPYLSGALPLLPALVVFQFSLATPERLPGPLLLAMGILLDLLLGGPGAPVGVSALGFVLIRAAVVNNRRYLVGVPFLFQWAGFCILALGFVILMWFFTALWTWTAIDPVPALMQYAVVIVIYPLLAPLLARVRARDPLN 522
            FL  LDR    ALPGA++   +LLTLAP+R P +  A PLLP + V+ F L   E LP  LL   G+L DLL GG GAPVG+SAL F++IR  ++ N++YLV V F F W G+ +L+   V + W    L +W  IDP P   QY V + +YP+   +L R RAR PLN
Sbjct:    4 FLHQLDRALYAALPGALVGLLILLTLAPIRLPDVMAAAPLLPLMAVYHFCLFRAEALPAWLLFVFGMLYDLLQGGVGAPVGLSALQFLMIRQVILGNQKYLVAVSFTFIWLGYAMLSAVAVTMAWCVVTLLSWRFIDPQPLFFQYIVSLFLYPIFGWILGRGRARSPLN 172          
BLAST of mRNA_P-wetherbeei_contig16082.1.1 vs. uniprot
Match: A0A2D6T1S4_9PROT (Rod shape-determining protein MreD n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6T1S4_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 2.380e-19
Identity = 55/156 (35.26%), Postives = 85/156 (54.49%), Query Frame = 1
Query:   31 DRWGRWALPGAVLLFFVLLTLAPLRAPYLSGALPLLPALVVFQFSLATPERLPGPLLLAMGILLDLLLGGPGAPVGVSALGFVLIRAAVVNNRRYLVGVPFLFQWAGFCILALGFVILMWFFTALWTWTAIDPVPALMQYAVVIVIYPLLAPLLAR 498
            DR+ R   P  + L   L+   P R PY     P L  + V+ +SL  PE LP P +L +G++ D+L GGP   +G+ AL  +L+     + R  L+G  F  +W GF ++A+    +MW   AL+  + IDP+P  +Q  + I +YP+L+ L AR
Sbjct:   10 DRFARSLTPLLLTLALALVAALPFRVPYFPPVAPFLVLIAVYYWSLYRPELLPAPAVLLVGVVHDVLGGGP---LGLGALTLLLVHGVARSQRSVLLGKSFAVEWWGFMLIAVAAAAVMWLLAALYHVSLIDPLPVAVQAFLTIALYPVLSWLFAR 162          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16082.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1H8WWK8_9PROT6.710e-11390.48Rod shape-determining protein MreD n=5 Tax=Alphapr... [more]
A0A521QW27_9HYPH2.150e-10988.36Uncharacterized protein n=4 Tax=Alphaproteobacteri... [more]
A0A6N7A6W7_9PROT1.020e-10785.71Cell shape-determining protein n=2 Tax=Alphaproteo... [more]
A0A259MQZ9_9PROT9.740e-10684.13Uncharacterized protein n=1 Tax=Rhodospirillales b... [more]
UPI001E436E179.740e-10684.66hypothetical protein n=2 Tax=Reyranella TaxID=4452... [more]
A0A1T4T0H9_9HYPH6.560e-10483.07Uncharacterized protein n=1 Tax=Enhydrobacter aero... [more]
A0A5C8PQT1_9HYPH1.170e-4450.29Uncharacterized protein n=1 Tax=Vineibacter terrae... [more]
A0A537NL62_9PROT2.030e-4484.04Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
A0A5C5TM25_9HYPH2.580e-3847.34Uncharacterized protein n=1 Tax=Reyranella sp. CPC... [more]
A0A2D6T1S4_9PROT2.380e-1935.26Rod shape-determining protein MreD n=1 Tax=Rhodosp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16082contigP-wetherbeei_contig16082:602..1174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1150626.PHAMO_510099
Preferred namemreD
PFAMsMreD
Model size573
Max annot lvl204441|Rhodospirillales
KEGG koko:K03571
KEGG TC9.B.157.1
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.88e-19
EggNOG OGs2DDTT@1|root,32U20@2|Bacteria,1N2J3@1224|Proteobacteria,2UCVI@28211|Alphaproteobacteria,2JTCT@204441|Rhodospirillales
Descriptionshape-determining protein
Cds size573
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186076.4553206-CDS-P-wetherbeei_contig16082:601..11741683186076.4553206-CDS-P-wetherbeei_contig16082:601..1174Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16082 602..1174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16082.1.1prot_P-wetherbeei_contig16082.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16082 602..1174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16082.1.1

>prot_P-wetherbeei_contig16082.1.1 ID=prot_P-wetherbeei_contig16082.1.1|Name=mRNA_P-wetherbeei_contig16082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=191bp
MRADGFLAMLDRWGRWALPGAVLLFFVLLTLAPLRAPYLSGALPLLPALV
VFQFSLATPERLPGPLLLAMGILLDLLLGGPGAPVGVSALGFVLIRAAVV
NNRRYLVGVPFLFQWAGFCILALGFVILMWFFTALWTWTAIDPVPALMQY
AVVIVIYPLLAPLLARVRARDPLNVPDESRGTARPGETTL*
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mRNA from alignment at P-wetherbeei_contig16082:602..1174-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16082.1.1 ID=mRNA_P-wetherbeei_contig16082.1.1|Name=mRNA_P-wetherbeei_contig16082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=573bp|location=Sequence derived from alignment at P-wetherbeei_contig16082:602..1174- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGCGGACGGCTTCCTCGCCATGCTCGACCGCTGGGGACGCTGGGC GCTGCCCGGCGCCGTCCTGCTGTTCTTCGTGCTGCTGACCCTGGCGCCGC TGCGTGCGCCCTATCTCTCGGGGGCGCTGCCGCTCCTGCCGGCGCTGGTC GTCTTCCAGTTCAGCCTGGCCACGCCCGAGCGGCTGCCCGGGCCGCTCCT GCTGGCGATGGGCATCCTGCTCGACCTGCTGCTGGGCGGTCCCGGCGCCC CGGTCGGCGTCAGCGCGCTGGGCTTCGTGCTGATCCGGGCGGCCGTGGTC AACAACCGCCGCTACCTGGTGGGGGTGCCGTTCCTGTTCCAGTGGGCGGG CTTCTGCATCCTGGCGCTGGGTTTCGTGATCCTGATGTGGTTCTTCACCG CGCTCTGGACCTGGACGGCCATCGATCCCGTGCCGGCATTGATGCAATAT GCCGTGGTGATCGTGATCTACCCGCTCCTCGCCCCGCTGCTCGCCCGCGT GCGCGCCCGCGACCCGCTGAACGTGCCCGACGAATCGCGCGGCACGGCGC GGCCGGGAGAGACCACCTTATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16082:602..1174-

>mRNA_P-wetherbeei_contig16082.1.1 ID=mRNA_P-wetherbeei_contig16082.1.1|Name=mRNA_P-wetherbeei_contig16082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=573bp|location=Sequence derived from alignment at P-wetherbeei_contig16082:602..1174- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGCGGACGGCTTCCTCGCCATGCTCGACCGCTGGGGACGCTGGGC
GCTGCCCGGCGCCGTCCTGCTGTTCTTCGTGCTGCTGACCCTGGCGCCGC
TGCGTGCGCCCTATCTCTCGGGGGCGCTGCCGCTCCTGCCGGCGCTGGTC
GTCTTCCAGTTCAGCCTGGCCACGCCCGAGCGGCTGCCCGGGCCGCTCCT
GCTGGCGATGGGCATCCTGCTCGACCTGCTGCTGGGCGGTCCCGGCGCCC
CGGTCGGCGTCAGCGCGCTGGGCTTCGTGCTGATCCGGGCGGCCGTGGTC
AACAACCGCCGCTACCTGGTGGGGGTGCCGTTCCTGTTCCAGTGGGCGGG
CTTCTGCATCCTGGCGCTGGGTTTCGTGATCCTGATGTGGTTCTTCACCG
CGCTCTGGACCTGGACGGCCATCGATCCCGTGCCGGCATTGATGCAATAT
GCCGTGGTGATCGTGATCTACCCGCTCCTCGCCCCGCTGCTCGCCCGCGT
GCGCGCCCGCGACCCGCTGAACGTGCCCGACGAATCGCGCGGCACGGCGC
GGCCGGGAGAGACCACCTTATGA
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