mRNA_P-wetherbeei_contig16074.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16074.1.1
Unique NamemRNA_P-wetherbeei_contig16074.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16074.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16074contigP-wetherbeei_contig16074:13..1469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog115417.EPrPW00000020111
PFAMsRRM_1
Model size906
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.54e-05
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota,1MCB1@121069|Pythiales
DescriptionRNA binding protein. Source PGD
Cds size888
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186076.2918868-UTR-P-wetherbeei_contig16074:12..281683186076.2918868-UTR-P-wetherbeei_contig16074:12..28Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16074 13..28 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186076.3020236-CDS-P-wetherbeei_contig16074:28..4451683186076.3020236-CDS-P-wetherbeei_contig16074:28..445Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16074 29..445 +
1683186076.311571-CDS-P-wetherbeei_contig16074:647..9051683186076.311571-CDS-P-wetherbeei_contig16074:647..905Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16074 648..905 +
1683186076.3213804-CDS-P-wetherbeei_contig16074:1256..14691683186076.3213804-CDS-P-wetherbeei_contig16074:1256..1469Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16074 1257..1469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16074.1.1prot_P-wetherbeei_contig16074.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16074 29..1469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16074.1.1

>prot_P-wetherbeei_contig16074.1.1 ID=prot_P-wetherbeei_contig16074.1.1|Name=mRNA_P-wetherbeei_contig16074.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=296bp
MSSFGRVRSVEPPDDRHRATRPWIINFRDSSGAALALAKGDTKPLRQQTL
QFRQDLGGGPPPSLQLDRDRDRDRDRDRDRDRERERDREFDRERERDRDR
ERERDGRSDRDGGLFINGVQQDVERSVAIFGAAPDAKVPSMERTMGAFGE
VADVVPPKNRGSTAPWIVYFKTLEAAEAALEATGEVTLDGRRLETRLNAD
ARHAPPPDVARRTVAVFGFEDGREEDLLKHMSQGGPIKVVIPPSSRKRPW
LVKYTDAADARRAASQLDHTTVGRHLITMRLDAGLDQARAREESKR
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mRNA from alignment at P-wetherbeei_contig16074:13..1469+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16074.1.1 ID=mRNA_P-wetherbeei_contig16074.1.1|Name=mRNA_P-wetherbeei_contig16074.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1457bp|location=Sequence derived from alignment at P-wetherbeei_contig16074:13..1469+ (Phaeothamnion wetherbeei SAG_119_79)
GGAGGTGGAGCGGTTCATGTCGTCCTTCGGGCGGGTTCGCTCCGTCGAGC
CTCCGGACGACCGCCACCGCGCCACGCGCCCCTGGATCATCAACTTCCGC
GATTCGAGCGGCGCCGCCCTCGCCCTCGCCAAGGGCGACACCAAGCCGCT
GCGCCAGCAGACGCTTCAGTTCCGGCAGGACCTCGGCGGGGGTCCGCCGC
CGTCCTTGCAGCTGGACCGAGACCGGGACCGGGATCGGGACCGGGATCGG
GATCGAGATCGGGAGCGCGAGCGCGATCGGGAGTTCGACCGGGAGCGGGA
GAGGGACCGGGATCGGGAGAGGGAGAGAGACGGGCGCAGCGACCGGGATG
GGGGTTTGTTTATCAACGGAGTCCAGCAGGACGTGGAGCGGTCGGTCGCC
ATCTTCGGCGCCGCGCCGGACGCCAAAGTCCCGGTGAGTTGAGGCGGGAG
TCATCTGCCGCCTTCCTGCTGTTGTCACCGTCCTGTTACTCCATACTTCT
CCTTGCTGCCGCCATTTCTCTGCCATCCGCGAGCTTGCTGGAACCACAAT
GAACGTCGAGAAAAGAACCGAGCCCACCCTTAAACCCCATATCGACAACA
TAGCAAACTAAATCGCGGAATGCGCGAAAAAACAGAGCATGGAGCGCACG
ATGGGGGCGTTCGGTGAGGTGGCGGACGTGGTACCGCCCAAGAACCGCGG
GTCGACCGCGCCCTGGATCGTCTACTTCAAGACGCTCGAGGCAGCGGAAG
CGGCGCTCGAGGCGACGGGCGAGGTGACGCTGGATGGCCGCCGCCTCGAG
ACGCGCCTCAACGCCGACGCGCGCCACGCCCCGCCGCCCGATGTGGCGCG
GCGAACCGTCGCTGTCTTCGGCTTCGAGGACGGCCGCGAGGAGGTGCGTC
GGGAGCGTCGGGATTGGAAGGAAAGCATCCGCATTTTGCTTTGGGAGCGG
GTGTGCTTCTGTGTTGAATGTTGCTGAGGGCGGGCGTCGGCGGAGATGAG
TGTCGGCGGCGGTGACGGCGGCTGCACTGCCGACGGCAGTGACTGCGGCG
GCAGCGGCGGTGGCAGCGGCGCCAGAGGCCTTACCTGTTGCTTCCCGCGA
GGTCCTGGCCATGCAGTCCCTGCTTCGCAATAGGGGCTTGCTTATTCTGC
ACCATGTTCACTCTTCTTAACTCCCTTCTCTTGCAGCTTTCTTATCGTCG
CCTTCCTTGCCATGTCCTGTGATCTCCCACCGCCCCCGGCACAGGACCTG
TTGAAGCACATGTCGCAAGGCGGCCCCATCAAGGTGGTAATCCCGCCCTC
CTCCCGCAAGCGGCCCTGGCTGGTCAAGTACACCGACGCCGCCGATGCCC
GCCGCGCCGCCTCGCAGCTCGACCACACGACGGTCGGCCGCCACCTCATC
ACCATGCGCCTCGATGCTGGCCTGGACCAGGCCCGTGCCCGCGAGGAGTC
AAAGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16074:13..1469+

>mRNA_P-wetherbeei_contig16074.1.1 ID=mRNA_P-wetherbeei_contig16074.1.1|Name=mRNA_P-wetherbeei_contig16074.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=888bp|location=Sequence derived from alignment at P-wetherbeei_contig16074:13..1469+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTCCTTCGGGCGGGTTCGCTCCGTCGAGCCTCCGGACGACCGCCA
CCGCGCCACGCGCCCCTGGATCATCAACTTCCGCGATTCGAGCGGCGCCG
CCCTCGCCCTCGCCAAGGGCGACACCAAGCCGCTGCGCCAGCAGACGCTT
CAGTTCCGGCAGGACCTCGGCGGGGGTCCGCCGCCGTCCTTGCAGCTGGA
CCGAGACCGGGACCGGGATCGGGACCGGGATCGGGATCGAGATCGGGAGC
GCGAGCGCGATCGGGAGTTCGACCGGGAGCGGGAGAGGGACCGGGATCGG
GAGAGGGAGAGAGACGGGCGCAGCGACCGGGATGGGGGTTTGTTTATCAA
CGGAGTCCAGCAGGACGTGGAGCGGTCGGTCGCCATCTTCGGCGCCGCGC
CGGACGCCAAAGTCCCGAGCATGGAGCGCACGATGGGGGCGTTCGGTGAG
GTGGCGGACGTGGTACCGCCCAAGAACCGCGGGTCGACCGCGCCCTGGAT
CGTCTACTTCAAGACGCTCGAGGCAGCGGAAGCGGCGCTCGAGGCGACGG
GCGAGGTGACGCTGGATGGCCGCCGCCTCGAGACGCGCCTCAACGCCGAC
GCGCGCCACGCCCCGCCGCCCGATGTGGCGCGGCGAACCGTCGCTGTCTT
CGGCTTCGAGGACGGCCGCGAGGAGGACCTGTTGAAGCACATGTCGCAAG
GCGGCCCCATCAAGGTGGTAATCCCGCCCTCCTCCCGCAAGCGGCCCTGG
CTGGTCAAGTACACCGACGCCGCCGATGCCCGCCGCGCCGCCTCGCAGCT
CGACCACACGACGGTCGGCCGCCACCTCATCACCATGCGCCTCGATGCTG
GCCTGGACCAGGCCCGTGCCCGCGAGGAGTCAAAGCGC
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