mRNA_P-wetherbeei_contig16073.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16073.1.1
Unique NamemRNA_P-wetherbeei_contig16073.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16073.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16073contigP-wetherbeei_contig16073:286..1271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size762
Hectar predicted targeting categoryother localisation
Exons2
Cds size744
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186076.2448015-CDS-P-wetherbeei_contig16073:285..8281683186076.2448015-CDS-P-wetherbeei_contig16073:285..828Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16073 286..828 -
1683186076.2529936-CDS-P-wetherbeei_contig16073:1052..12531683186076.2529936-CDS-P-wetherbeei_contig16073:1052..1253Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16073 1053..1253 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186076.2680552-UTR-P-wetherbeei_contig16073:1253..12711683186076.2680552-UTR-P-wetherbeei_contig16073:1253..1271Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16073 1254..1271 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16073.1.1prot_P-wetherbeei_contig16073.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16073 286..1253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16073.1.1

>prot_P-wetherbeei_contig16073.1.1 ID=prot_P-wetherbeei_contig16073.1.1|Name=mRNA_P-wetherbeei_contig16073.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=248bp
MAVLPRGLPLIPAPLTQLCAFPACGRTARCGLVGVGVRAAFCREHRKENQ
VDPDSGDKDKGAASPCQAGDRNGMAAYVCGGVLSAAAADTVAAANAAAAA
AVAVASMAPPEEEAGDGDVFDALQWMHGTGLGGLNMSTEHVAAPVGPNDA
SKCQPDKMLQQPSAAAPHGGDVGGGPHPVPVGMMQQLLPPPLAPGYGFGG
RFDSLPASRAPAAPAPGQHGGMTAAAAAEEEEGREGRAGKQKGKGYR*
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mRNA from alignment at P-wetherbeei_contig16073:286..1271-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16073.1.1 ID=mRNA_P-wetherbeei_contig16073.1.1|Name=mRNA_P-wetherbeei_contig16073.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=986bp|location=Sequence derived from alignment at P-wetherbeei_contig16073:286..1271- (Phaeothamnion wetherbeei SAG_119_79)
GTAGCGGCGCCGCTCGGTATGGCGGTGCTGCCGAGGGGGCTGCCGCTCAT
CCCGGCGCCGCTGACGCAGCTGTGCGCATTCCCGGCCTGCGGGCGGACGG
CACGCTGTGGCCTGGTCGGCGTCGGCGTCAGAGCGGCGTTCTGCCGCGAG
CACCGGAAAGAAAACCAGGTGGACCCGGACAGCGGCGATAAGGATAAGGG
AGCGGCGAGCCCGTGCCAGGTCAGCTGGCTTGGCGTTTATGTTGTTGTCC
GTGGTGTTTCTGCTGTTGCACTTTGTTGTTTCCATCCCGGTCGGCTTTGC
GTGGAAAGTCTCCTTCGCCGGTCATGCAAGCTACCGTGGTCCGTCGATAT
GAGCGTTTCCTGGCAGCCTTCTACTTTGTGTGCCGGAGCGGCTTCAGAAA
TTGATATTCACCACGTCCCACTCTCCCTCCTCCATGTCTGCAGGCGGGAG
ACCGTAACGGCATGGCGGCTTACGTATGTGGTGGGGTCCTGTCAGCGGCC
GCGGCGGACACAGTGGCAGCGGCGAATGCAGCGGCAGCGGCGGCGGTGGC
GGTGGCATCGATGGCGCCGCCAGAAGAAGAAGCGGGCGACGGGGACGTGT
TCGACGCGCTGCAGTGGATGCACGGGACGGGTCTGGGCGGGCTGAACATG
AGTACCGAGCACGTTGCGGCGCCGGTTGGCCCCAACGACGCATCGAAATG
CCAGCCCGACAAGATGCTTCAGCAACCGTCAGCGGCGGCGCCGCATGGCG
GCGACGTGGGCGGCGGCCCGCACCCCGTGCCGGTGGGAATGATGCAGCAG
CTGCTGCCGCCGCCGCTGGCGCCGGGATATGGATTTGGCGGCAGGTTCGA
CTCTCTGCCCGCCTCGCGGGCGCCCGCGGCGCCGGCGCCCGGACAACACG
GCGGCATGACGGCAGCAGCGGCGGCGGAGGAGGAGGAGGGCAGGGAAGGG
AGAGCAGGAAAACAGAAGGGGAAGGGATACCGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16073:286..1271-

>mRNA_P-wetherbeei_contig16073.1.1 ID=mRNA_P-wetherbeei_contig16073.1.1|Name=mRNA_P-wetherbeei_contig16073.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=744bp|location=Sequence derived from alignment at P-wetherbeei_contig16073:286..1271- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGTGCTGCCGAGGGGGCTGCCGCTCATCCCGGCGCCGCTGACGCA
GCTGTGCGCATTCCCGGCCTGCGGGCGGACGGCACGCTGTGGCCTGGTCG
GCGTCGGCGTCAGAGCGGCGTTCTGCCGCGAGCACCGGAAAGAAAACCAG
GTGGACCCGGACAGCGGCGATAAGGATAAGGGAGCGGCGAGCCCGTGCCA
GGCGGGAGACCGTAACGGCATGGCGGCTTACGTATGTGGTGGGGTCCTGT
CAGCGGCCGCGGCGGACACAGTGGCAGCGGCGAATGCAGCGGCAGCGGCG
GCGGTGGCGGTGGCATCGATGGCGCCGCCAGAAGAAGAAGCGGGCGACGG
GGACGTGTTCGACGCGCTGCAGTGGATGCACGGGACGGGTCTGGGCGGGC
TGAACATGAGTACCGAGCACGTTGCGGCGCCGGTTGGCCCCAACGACGCA
TCGAAATGCCAGCCCGACAAGATGCTTCAGCAACCGTCAGCGGCGGCGCC
GCATGGCGGCGACGTGGGCGGCGGCCCGCACCCCGTGCCGGTGGGAATGA
TGCAGCAGCTGCTGCCGCCGCCGCTGGCGCCGGGATATGGATTTGGCGGC
AGGTTCGACTCTCTGCCCGCCTCGCGGGCGCCCGCGGCGCCGGCGCCCGG
ACAACACGGCGGCATGACGGCAGCAGCGGCGGCGGAGGAGGAGGAGGGCA
GGGAAGGGAGAGCAGGAAAACAGAAGGGGAAGGGATACCGTTGA
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