mRNA_P-wetherbeei_contig1602.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1602.1.1
Unique NamemRNA_P-wetherbeei_contig1602.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1602.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1602contigP-wetherbeei_contig1602:5492..6726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1235
Hectar predicted targeting categoryother localisation
Exons1
Cds size1149
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186074.7779922-UTR-P-wetherbeei_contig1602:5491..55161683186074.7779922-UTR-P-wetherbeei_contig1602:5491..5516Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1602 5492..5516 -
1683186074.7976458-UTR-P-wetherbeei_contig1602:6665..67261683186074.7976458-UTR-P-wetherbeei_contig1602:6665..6726Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1602 6666..6726 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186074.787009-CDS-P-wetherbeei_contig1602:5516..66651683186074.787009-CDS-P-wetherbeei_contig1602:5516..6665Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1602 5517..6665 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1602.1.1prot_P-wetherbeei_contig1602.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1602 5517..6665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1602.1.1

>prot_P-wetherbeei_contig1602.1.1 ID=prot_P-wetherbeei_contig1602.1.1|Name=mRNA_P-wetherbeei_contig1602.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=383bp
MRNRSKPDGPAAAADMAAAAAVGAAPGVASDSTAVAVALAAKPPERIVSG
WRPLPLLCKRFNVPAPDASIAGAQPPPPVGKGRATRATEKAFGPEIHRFV
QAVAAVKQEPPRQNKASQDVVGSDSSGGDGDGGGDGGGDGGGGGVSAAKH
SPPPEEELPEEPIVRPPVDLFRSIFEASSDESEDEAGSEGGEEEDRGESG
AAEGEKGRPAPPSLPYGGASISTTAPSFASADALGGGCGGVIASSRGDDA
AAAMPRPVFIPKVLRHEGRWGVVSPAGVDGRFGGGSSGRGGGGAREEGEH
EAYKAAAVAAAPTVTAIVEGYGAAAALSESSSGEDDDRRTSSSSRRSYKK
KEKKRKREKGSKRHKNKKDRHKKSRRKDDKER*
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mRNA from alignment at P-wetherbeei_contig1602:5492..6726-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1602.1.1 ID=mRNA_P-wetherbeei_contig1602.1.1|Name=mRNA_P-wetherbeei_contig1602.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1235bp|location=Sequence derived from alignment at P-wetherbeei_contig1602:5492..6726- (Phaeothamnion wetherbeei SAG_119_79)
CGGCGCCAGCGTCGTGCCGGCGGCGGAAAGCGACGCCACCCCCGTCCCCG
CCGGCCTCAGCATGCGCAACCGCTCAAAGCCGGACGGGCCTGCCGCGGCG
GCTGATATGGCAGCAGCTGCAGCGGTGGGAGCGGCGCCGGGCGTCGCGAG
CGATAGCACCGCCGTCGCGGTGGCGCTCGCTGCAAAGCCGCCGGAGCGGA
TCGTCAGCGGGTGGAGGCCCCTGCCTCTCCTCTGCAAGCGCTTCAACGTC
CCGGCGCCCGACGCATCCATTGCCGGCGCGCAGCCGCCTCCGCCGGTGGG
GAAGGGCCGGGCAACCCGCGCAACTGAGAAGGCGTTCGGTCCTGAGATCC
ACCGCTTCGTGCAGGCCGTCGCGGCGGTCAAGCAGGAGCCGCCGCGGCAG
AACAAGGCATCACAGGATGTAGTTGGCAGCGACAGCAGCGGCGGTGACGG
CGACGGCGGCGGCGACGGCGGCGGCGACGGCGGCGGCGGCGGTGTGTCGG
CAGCAAAGCATTCGCCGCCGCCGGAAGAGGAGCTGCCGGAGGAGCCGATC
GTGCGGCCGCCCGTCGACCTCTTCAGGAGCATCTTCGAGGCCAGCTCGGA
CGAGTCGGAAGATGAGGCGGGCTCGGAGGGAGGCGAGGAAGAGGATCGGG
GGGAATCCGGGGCGGCGGAGGGCGAAAAGGGAAGGCCTGCTCCTCCTTCG
CTTCCTTACGGGGGCGCATCGATCAGCACAACAGCGCCGTCTTTCGCTTC
CGCCGACGCACTCGGTGGTGGTTGCGGCGGCGTTATCGCGTCGTCGAGAG
GCGATGATGCCGCTGCCGCGATGCCTAGGCCCGTATTCATCCCGAAGGTG
TTGCGGCATGAAGGCAGGTGGGGGGTGGTGTCTCCCGCCGGTGTCGACGG
CCGTTTTGGTGGTGGCAGCAGCGGAAGAGGAGGAGGAGGCGCACGAGAAG
AAGGAGAGCATGAGGCATACAAGGCGGCGGCGGTGGCGGCCGCACCAACG
GTGACAGCAATAGTGGAAGGGTACGGCGCAGCTGCGGCACTCTCTGAGTC
GAGCAGCGGCGAGGACGACGACCGCAGGACTTCCTCGTCGTCGCGCCGCT
CGTACAAGAAGAAGGAGAAGAAGCGGAAGCGAGAGAAGGGTAGCAAACGT
CACAAGAACAAAAAAGATCGGCACAAGAAGAGCCGCCGGAAGGACGACAA
GGAAAGATAGGCAACCAATAAATAATGTAACTGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1602:5492..6726-

>mRNA_P-wetherbeei_contig1602.1.1 ID=mRNA_P-wetherbeei_contig1602.1.1|Name=mRNA_P-wetherbeei_contig1602.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1149bp|location=Sequence derived from alignment at P-wetherbeei_contig1602:5492..6726- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCAACCGCTCAAAGCCGGACGGGCCTGCCGCGGCGGCTGATATGGC
AGCAGCTGCAGCGGTGGGAGCGGCGCCGGGCGTCGCGAGCGATAGCACCG
CCGTCGCGGTGGCGCTCGCTGCAAAGCCGCCGGAGCGGATCGTCAGCGGG
TGGAGGCCCCTGCCTCTCCTCTGCAAGCGCTTCAACGTCCCGGCGCCCGA
CGCATCCATTGCCGGCGCGCAGCCGCCTCCGCCGGTGGGGAAGGGCCGGG
CAACCCGCGCAACTGAGAAGGCGTTCGGTCCTGAGATCCACCGCTTCGTG
CAGGCCGTCGCGGCGGTCAAGCAGGAGCCGCCGCGGCAGAACAAGGCATC
ACAGGATGTAGTTGGCAGCGACAGCAGCGGCGGTGACGGCGACGGCGGCG
GCGACGGCGGCGGCGACGGCGGCGGCGGCGGTGTGTCGGCAGCAAAGCAT
TCGCCGCCGCCGGAAGAGGAGCTGCCGGAGGAGCCGATCGTGCGGCCGCC
CGTCGACCTCTTCAGGAGCATCTTCGAGGCCAGCTCGGACGAGTCGGAAG
ATGAGGCGGGCTCGGAGGGAGGCGAGGAAGAGGATCGGGGGGAATCCGGG
GCGGCGGAGGGCGAAAAGGGAAGGCCTGCTCCTCCTTCGCTTCCTTACGG
GGGCGCATCGATCAGCACAACAGCGCCGTCTTTCGCTTCCGCCGACGCAC
TCGGTGGTGGTTGCGGCGGCGTTATCGCGTCGTCGAGAGGCGATGATGCC
GCTGCCGCGATGCCTAGGCCCGTATTCATCCCGAAGGTGTTGCGGCATGA
AGGCAGGTGGGGGGTGGTGTCTCCCGCCGGTGTCGACGGCCGTTTTGGTG
GTGGCAGCAGCGGAAGAGGAGGAGGAGGCGCACGAGAAGAAGGAGAGCAT
GAGGCATACAAGGCGGCGGCGGTGGCGGCCGCACCAACGGTGACAGCAAT
AGTGGAAGGGTACGGCGCAGCTGCGGCACTCTCTGAGTCGAGCAGCGGCG
AGGACGACGACCGCAGGACTTCCTCGTCGTCGCGCCGCTCGTACAAGAAG
AAGGAGAAGAAGCGGAAGCGAGAGAAGGGTAGCAAACGTCACAAGAACAA
AAAAGATCGGCACAAGAAGAGCCGCCGGAAGGACGACAAGGAAAGATAG
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