mRNA_P-wetherbeei_contig15971.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15971.1.1
Unique NamemRNA_P-wetherbeei_contig15971.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15971.1.1 vs. uniprot
Match: A0A835ZGS8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS8_9STRA)

HSP 1 Score: 257 bits (657), Expect = 8.760e-83
Identity = 136/194 (70.10%), Postives = 154/194 (79.38%), Query Frame = 1
Query:   49 LPSHHLATGGAGVLIS---SPGGRFQIKRCQGFVRCDMDIESEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDVATVENAAKGVEAYIAAAPIKAGAVEAAVTRNLECPPHLLDTLGDRATIARIVKETRAQVVVNKKMMRIIIRGNPHAVDMASDKVAALIAQALLGDAESVLSYASLGSHGQH 621
            L  H   T     L+S   SP   + IKRCQGFVRCDMDI++EVVGWVIGK+GSTIKD+K+KTGCNMWVDQRALKLTITGPDV TVE+AAK VEAY+AAAPIKAGAVEAAVTR+L+CPPHLLD LGDRATIARIVKETRAQVVVNKKM R+I+RG PHAV MA  KV A+I  A +  +   +  AS  S  +H
Sbjct:   18 LTEHDYGTSSDFSLLSGLGSPFSTYSIKRCQGFVRCDMDIDAEVVGWVIGKSGSTIKDLKNKTGCNMWVDQRALKLTITGPDVRTVEHAAKSVEAYVAAAPIKAGAVEAAVTRSLDCPPHLLDVLGDRATIARIVKETRAQVVVNKKMARVIVRGGPHAVQMACGKVQAIITAAAVEHSRKSVIDASDPSLDRH 211          
BLAST of mRNA_P-wetherbeei_contig15971.1.1 vs. uniprot
Match: A0A835YT56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT56_9STRA)

HSP 1 Score: 254 bits (648), Expect = 1.370e-78
Identity = 128/170 (75.29%), Postives = 145/170 (85.29%), Query Frame = 1
Query:   91 ISSPGGRFQIKRCQGFVRCDMDIESEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDVATVENAAKGVEAYIAAAPIKAGAVEAAVTRNLECPPHLLDTLGDRATIARIVKETRAQVVVNKKMMRIIIRGNPHAVDMASDKVAALIAQALLGDAESVLSYAS 600
            I +P   + IKRCQGF+RCDMDI++EVVGWVIG+NGSTIKD+K+KTGCNMWVDQRALKLTITGPDV  VE+AAK VEAY+AAAPIKAGAVEAAVTR+LECPPHLLD LGDRATIARIVKETRAQVVVNKKM R+IIRGN HAV MA  ++  +IA A    A   + +AS
Sbjct:   50 IMAPFSPYSIKRCQGFIRCDMDIDAEVVGWVIGRNGSTIKDLKNKTGCNMWVDQRALKLTITGPDVCAVEHAAKCVEAYVAAAPIKAGAVEAAVTRSLECPPHLLDMLGDRATIARIVKETRAQVVVNKKMARVIIRGNAHAVHMACGRIQTIIAAAAAEHARRAILHAS 219          
BLAST of mRNA_P-wetherbeei_contig15971.1.1 vs. uniprot
Match: D7FQB1_ECTSI (SAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB1_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 1.710e-74
Identity = 137/213 (64.32%), Postives = 160/213 (75.12%), Query Frame = 1
Query:    1 HGGGGMMDPHAPQFEPLPSHHLATGGAGVLI--SSPGGRFQIKRCQGFVRCDMDIESEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDVATVENAAKGVEAYIAAAPIKAGAVEAAVTRNLECPPHLLDTLGDRATIARIVKETRAQVVVNKKMMRIIIRGNPHAVDMASDKVAALIAQALLGDAESVLSYASLGSHGQHRNGG 633
            HG       H PQ +PL S   ++ G  VL   S  G  + IKRCQGFVRCDMDI++EVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPD+ +VE+AAK V+AY+AAAPIKAGAVEAAVT+ +ECPP LLD LGDR TIARIVKET AQVVVNKK+ RII+RG+  +VD+A + V A+I  A+ G     L  ++  SHG    GG
Sbjct:   17 HGSMSASRHHQPQQQPLGS---SSAGREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVGG 226          
BLAST of mRNA_P-wetherbeei_contig15971.1.1 vs. uniprot
Match: D7FHT5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT5_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.740e-31
Identity = 70/139 (50.36%), Postives = 96/139 (69.06%), Query Frame = 1
Query:  118 IKRCQGFVRCDMDIESEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDVATVENAAKGVEAYIAAAPIK---AGAVEAAVTRNLECPPHLLDTLGDR--ATIARIVKETRAQVVVNKKMMRIIIRGNPHAV 519
            ++R  GFVRC MDI  EVVGWVIG++G+ IK+MKH++GC MWVDQ+ LKL ITG D+  +  AA  V   I+ AP+    AG  +   +  +ECPPHL+  L  R  +TI RI +E+RA VV+N+KMM++I+ G P +V
Sbjct:   25 LERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSV 163          
BLAST of mRNA_P-wetherbeei_contig15971.1.1 vs. uniprot
Match: A0A835YRS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS0_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.390e-27
Identity = 65/128 (50.78%), Postives = 90/128 (70.31%), Query Frame = 1
Query:  118 IKRCQGFVRCDMDIESEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDVATVENAAKGVEAYIAAAPIK---AGAVEAAVTRNLECPPHLLDTLGDR--ATIARIVKETRAQVVVNKKMM 486
            +++  GFVRC +DI  EVVGWVIG++GS IK+MKH++GC MWVDQ+ LKL ITG D+  +  AA  V   I+ AP+    AG  +  V++ ++CPPHL+  L  R  +TI RI +E+RA VV+N+KMM
Sbjct:  292 LEKFPGFVRCVIDIAPEVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKAPVNMNAAGVDDEVVSQMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMM 419          
BLAST of mRNA_P-wetherbeei_contig15971.1.1 vs. uniprot
Match: A0A836CJQ9_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ9_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.650e-21
Identity = 62/156 (39.74%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  166 EVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDVATVENAAKGVEAYIAAAPI---------------------------------KAGAVEAAVTRNLECPPHLLDTLGDR--ATIARIVKETRAQVVVNKKMMRIIIRGNPHAVDMA 528
            EVVGWVIG++GS IK+MKH++GC MWVDQ+ LKL ITG D+  +  AA  V   I+  P                                   AG  +  V++ ++CPPHL+  L  R  +TI RI +E+RA VV+N+KMM++I+ G P +V +A
Sbjct:  318 EVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKVPYVPSFKGMYRAYQXXXXXXXXXXXXXXXXXVNVSAAGVEDEVVSQMMDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLA 473          
BLAST of mRNA_P-wetherbeei_contig15971.1.1 vs. uniprot
Match: A0A6H5JET1_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET1_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.190e-16
Identity = 48/107 (44.86%), Postives = 70/107 (65.42%), Query Frame = 1
Query:  214 MKHKTGCNMWVDQRALKLTITGPDVATVENAAKGVEAYIAAAPIK---AGAVEAAVTRNLECPPHLLDTLGDR--ATIARIVKETRAQVVVNKKMMRIIIRGNPHAV 519
            ++H++GC MWVDQ+ LKL ITG D+  +  AA  V   I+ AP+    AG  +   +  +ECPPHL+  L  R  +TI RI +E+RA VV+N+KMM++I+ G P +V
Sbjct:   59 LRHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSV 165          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15971.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835ZGS8_9STRA8.760e-8370.10Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YT56_9STRA1.370e-7875.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FQB1_ECTSI1.710e-7464.32SAM domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7FHT5_ECTSI1.740e-3150.36SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YRS0_9STRA1.390e-2750.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJQ9_9STRA1.650e-2139.74SAM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5JET1_9PHAE2.190e-1644.86SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15971contigP-wetherbeei_contig15971:374..1523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog248742.XP_005652020.1
PFAMsKH_1,WW
Model size819
Max annot lvl3041|Chlorophyta
KEGG koko:K13210
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.34e-06
EggNOG OGsKOG1676@1|root,KOG1676@2759|Eukaryota,37VFX@33090|Viridiplantae,34I34@3041|Chlorophyta
Ec32 ortholog descriptionK Homology domain
Ec32 orthologEc-01_006780.1
DescriptionK homology RNA-binding domain
Cds size804
COG categoryA
BRITEko00000,ko03019,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186073.019854-UTR-P-wetherbeei_contig15971:373..3881683186073.019854-UTR-P-wetherbeei_contig15971:373..388Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15971 374..388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186073.0309396-CDS-P-wetherbeei_contig15971:388..5051683186073.0309396-CDS-P-wetherbeei_contig15971:388..505Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15971 389..505 +
1683186073.0400336-CDS-P-wetherbeei_contig15971:665..10971683186073.0400336-CDS-P-wetherbeei_contig15971:665..1097Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15971 666..1097 +
1683186073.0490038-CDS-P-wetherbeei_contig15971:1268..15231683186073.0490038-CDS-P-wetherbeei_contig15971:1268..1523Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15971 1269..1523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15971.1.1prot_P-wetherbeei_contig15971.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15971 389..1523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15971.1.1

>prot_P-wetherbeei_contig15971.1.1 ID=prot_P-wetherbeei_contig15971.1.1|Name=mRNA_P-wetherbeei_contig15971.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=268bp
MMDPHAPQFEPLPSHHLATGGAGVLISSPGGRFQIKRCQGFVRCDMDIES
EVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDVATVENAAKG
VEAYIAAAPIKAGAVEAAVTRNLECPPHLLDTLGDRATIARIVKETRAQV
VVNKKMMRIIIRGNPHAVDMASDKVAALIAQALLGDAESVLSYASLGSHG
QHRNGGGGGVHDYSPSSSAPVSPRGRGGPSWSLFSGGFSGTSALHDAAVG
GGGGSGETSPVLAYRGTP
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mRNA from alignment at P-wetherbeei_contig15971:374..1523+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15971.1.1 ID=mRNA_P-wetherbeei_contig15971.1.1|Name=mRNA_P-wetherbeei_contig15971.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1150bp|location=Sequence derived from alignment at P-wetherbeei_contig15971:374..1523+ (Phaeothamnion wetherbeei SAG_119_79)
CACGGCGGAGGCGGGATGATGGACCCGCACGCGCCGCAGTTCGAGCCACT GCCGAGCCACCACCTGGCGACAGGCGGCGCGGGCGTCCTGATCAGCAGTC CTGGTGGACGCTTCCAGATCAAAAGATGCCAGGTGAGAAAATTTCCTTCT TTTAATCGTTTCGGTTGGCGTTCTCCTTTCCTAGCACCATTGGTCGACTC TCCACAACGCTGCGCCCGTGCTGTCGCTCACCGTTTCGGTTTTTGGATTT CATTTTCATTATCCCACCTTTTTCCTTCTATTGCATACGCAGGGCTTCGT GCGCTGCGACATGGATATTGAGAGCGAGGTGGTCGGGTGGGTCATCGGCA AGAACGGCTCGACGATCAAGGACATGAAGCACAAGACGGGCTGCAACATG TGGGTGGACCAACGGGCACTGAAGCTCACCATCACCGGGCCCGACGTTGC GACGGTCGAGAACGCCGCCAAGGGTGTCGAGGCGTACATCGCCGCGGCGC CCATAAAAGCTGGCGCCGTCGAGGCCGCGGTGACGCGCAACCTCGAGTGC CCGCCGCACCTGCTCGACACGCTTGGCGACCGGGCCACCATCGCCCGTAT CGTCAAGGAGACGCGCGCCCAGGTCGTCGTCAACAAGAAGATGATGCGCA TCATTATCCGCGGCAACCCGCACGCCGTCGACATGGCCAGCGACAAGGTC GCGGCGCTAATTGCGCAGGCGCTCGTTGACGAGCAGGAGCAGCGTGGCCG TGCCGAGGCCAAGGCCTACCAACAGCTGCTGGCGCAGCACCAGCGCTGGC TGGCCGCCCGCGCCGCTGGATCCGCCGGCACGATCGCCGCCGGCGGCGGT CATGACGAACGAGACCGCCACTTCAGCAGCGAGGTGGACTCGGAGCTAGG CGACGCCGAGAGTGTGCTGTCGTACGCCTCGCTCGGCTCGCACGGGCAGC ACCGCAACGGTGGCGGCGGCGGCGTGCACGACTATTCGCCGTCGTCGTCG GCGCCCGTCAGCCCGCGCGGCCGCGGCGGCCCGTCGTGGTCGCTCTTCTC GGGAGGCTTCAGCGGCACGTCGGCGCTGCACGACGCGGCGGTCGGCGGCG GCGGCGGCAGCGGCGAGACTTCGCCAGTGCTGGCGTACCGCGGCACGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15971:374..1523+

>mRNA_P-wetherbeei_contig15971.1.1 ID=mRNA_P-wetherbeei_contig15971.1.1|Name=mRNA_P-wetherbeei_contig15971.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=804bp|location=Sequence derived from alignment at P-wetherbeei_contig15971:374..1523+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGGACCCGCACGCGCCGCAGTTCGAGCCACTGCCGAGCCACCACCT
GGCGACAGGCGGCGCGGGCGTCCTGATCAGCAGTCCTGGTGGACGCTTCC
AGATCAAAAGATGCCAGGGCTTCGTGCGCTGCGACATGGATATTGAGAGC
GAGGTGGTCGGGTGGGTCATCGGCAAGAACGGCTCGACGATCAAGGACAT
GAAGCACAAGACGGGCTGCAACATGTGGGTGGACCAACGGGCACTGAAGC
TCACCATCACCGGGCCCGACGTTGCGACGGTCGAGAACGCCGCCAAGGGT
GTCGAGGCGTACATCGCCGCGGCGCCCATAAAAGCTGGCGCCGTCGAGGC
CGCGGTGACGCGCAACCTCGAGTGCCCGCCGCACCTGCTCGACACGCTTG
GCGACCGGGCCACCATCGCCCGTATCGTCAAGGAGACGCGCGCCCAGGTC
GTCGTCAACAAGAAGATGATGCGCATCATTATCCGCGGCAACCCGCACGC
CGTCGACATGGCCAGCGACAAGGTCGCGGCGCTAATTGCGCAGGCGCTCC
TAGGCGACGCCGAGAGTGTGCTGTCGTACGCCTCGCTCGGCTCGCACGGG
CAGCACCGCAACGGTGGCGGCGGCGGCGTGCACGACTATTCGCCGTCGTC
GTCGGCGCCCGTCAGCCCGCGCGGCCGCGGCGGCCCGTCGTGGTCGCTCT
TCTCGGGAGGCTTCAGCGGCACGTCGGCGCTGCACGACGCGGCGGTCGGC
GGCGGCGGCGGCAGCGGCGAGACTTCGCCAGTGCTGGCGTACCGCGGCAC
GCCC
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