mRNA_P-wetherbeei_contig15971.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig15971.1.1 vs. uniprot
Match: A0A835ZGS8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS8_9STRA) HSP 1 Score: 257 bits (657), Expect = 8.760e-83 Identity = 136/194 (70.10%), Postives = 154/194 (79.38%), Query Frame = 1
Query: 49 LPSHHLATGGAGVLIS---SPGGRFQIKRCQGFVRCDMDIESEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDVATVENAAKGVEAYIAAAPIKAGAVEAAVTRNLECPPHLLDTLGDRATIARIVKETRAQVVVNKKMMRIIIRGNPHAVDMASDKVAALIAQALLGDAESVLSYASLGSHGQH 621
L H T L+S SP + IKRCQGFVRCDMDI++EVVGWVIGK+GSTIKD+K+KTGCNMWVDQRALKLTITGPDV TVE+AAK VEAY+AAAPIKAGAVEAAVTR+L+CPPHLLD LGDRATIARIVKETRAQVVVNKKM R+I+RG PHAV MA KV A+I A + + + AS S +H
Sbjct: 18 LTEHDYGTSSDFSLLSGLGSPFSTYSIKRCQGFVRCDMDIDAEVVGWVIGKSGSTIKDLKNKTGCNMWVDQRALKLTITGPDVRTVEHAAKSVEAYVAAAPIKAGAVEAAVTRSLDCPPHLLDVLGDRATIARIVKETRAQVVVNKKMARVIVRGGPHAVQMACGKVQAIITAAAVEHSRKSVIDASDPSLDRH 211
BLAST of mRNA_P-wetherbeei_contig15971.1.1 vs. uniprot
Match: A0A835YT56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT56_9STRA) HSP 1 Score: 254 bits (648), Expect = 1.370e-78 Identity = 128/170 (75.29%), Postives = 145/170 (85.29%), Query Frame = 1
Query: 91 ISSPGGRFQIKRCQGFVRCDMDIESEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDVATVENAAKGVEAYIAAAPIKAGAVEAAVTRNLECPPHLLDTLGDRATIARIVKETRAQVVVNKKMMRIIIRGNPHAVDMASDKVAALIAQALLGDAESVLSYAS 600
I +P + IKRCQGF+RCDMDI++EVVGWVIG+NGSTIKD+K+KTGCNMWVDQRALKLTITGPDV VE+AAK VEAY+AAAPIKAGAVEAAVTR+LECPPHLLD LGDRATIARIVKETRAQVVVNKKM R+IIRGN HAV MA ++ +IA A A + +AS
Sbjct: 50 IMAPFSPYSIKRCQGFIRCDMDIDAEVVGWVIGRNGSTIKDLKNKTGCNMWVDQRALKLTITGPDVCAVEHAAKCVEAYVAAAPIKAGAVEAAVTRSLECPPHLLDMLGDRATIARIVKETRAQVVVNKKMARVIIRGNAHAVHMACGRIQTIIAAAAAEHARRAILHAS 219
BLAST of mRNA_P-wetherbeei_contig15971.1.1 vs. uniprot
Match: D7FQB1_ECTSI (SAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB1_ECTSI) HSP 1 Score: 248 bits (633), Expect = 1.710e-74 Identity = 137/213 (64.32%), Postives = 160/213 (75.12%), Query Frame = 1
Query: 1 HGGGGMMDPHAPQFEPLPSHHLATGGAGVLI--SSPGGRFQIKRCQGFVRCDMDIESEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDVATVENAAKGVEAYIAAAPIKAGAVEAAVTRNLECPPHLLDTLGDRATIARIVKETRAQVVVNKKMMRIIIRGNPHAVDMASDKVAALIAQALLGDAESVLSYASLGSHGQHRNGG 633
HG H PQ +PL S ++ G VL S G + IKRCQGFVRCDMDI++EVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPD+ +VE+AAK V+AY+AAAPIKAGAVEAAVT+ +ECPP LLD LGDR TIARIVKET AQVVVNKK+ RII+RG+ +VD+A + V A+I A+ G L ++ SHG GG
Sbjct: 17 HGSMSASRHHQPQQQPLGS---SSAGREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVGG 226
BLAST of mRNA_P-wetherbeei_contig15971.1.1 vs. uniprot
Match: D7FHT5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT5_ECTSI) HSP 1 Score: 132 bits (333), Expect = 1.740e-31 Identity = 70/139 (50.36%), Postives = 96/139 (69.06%), Query Frame = 1
Query: 118 IKRCQGFVRCDMDIESEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDVATVENAAKGVEAYIAAAPIK---AGAVEAAVTRNLECPPHLLDTLGDR--ATIARIVKETRAQVVVNKKMMRIIIRGNPHAV 519
++R GFVRC MDI EVVGWVIG++G+ IK+MKH++GC MWVDQ+ LKL ITG D+ + AA V I+ AP+ AG + + +ECPPHL+ L R +TI RI +E+RA VV+N+KMM++I+ G P +V
Sbjct: 25 LERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSV 163
BLAST of mRNA_P-wetherbeei_contig15971.1.1 vs. uniprot
Match: A0A835YRS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS0_9STRA) HSP 1 Score: 122 bits (305), Expect = 1.390e-27 Identity = 65/128 (50.78%), Postives = 90/128 (70.31%), Query Frame = 1
Query: 118 IKRCQGFVRCDMDIESEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDVATVENAAKGVEAYIAAAPIK---AGAVEAAVTRNLECPPHLLDTLGDR--ATIARIVKETRAQVVVNKKMM 486
+++ GFVRC +DI EVVGWVIG++GS IK+MKH++GC MWVDQ+ LKL ITG D+ + AA V I+ AP+ AG + V++ ++CPPHL+ L R +TI RI +E+RA VV+N+KMM
Sbjct: 292 LEKFPGFVRCVIDIAPEVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKAPVNMNAAGVDDEVVSQMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMM 419
BLAST of mRNA_P-wetherbeei_contig15971.1.1 vs. uniprot
Match: A0A836CJQ9_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ9_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.650e-21 Identity = 62/156 (39.74%), Postives = 87/156 (55.77%), Query Frame = 1
Query: 166 EVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDVATVENAAKGVEAYIAAAPI---------------------------------KAGAVEAAVTRNLECPPHLLDTLGDR--ATIARIVKETRAQVVVNKKMMRIIIRGNPHAVDMA 528
EVVGWVIG++GS IK+MKH++GC MWVDQ+ LKL ITG D+ + AA V I+ P AG + V++ ++CPPHL+ L R +TI RI +E+RA VV+N+KMM++I+ G P +V +A
Sbjct: 318 EVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKVPYVPSFKGMYRAYQXXXXXXXXXXXXXXXXXVNVSAAGVEDEVVSQMMDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLA 473
BLAST of mRNA_P-wetherbeei_contig15971.1.1 vs. uniprot
Match: A0A6H5JET1_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET1_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 2.190e-16 Identity = 48/107 (44.86%), Postives = 70/107 (65.42%), Query Frame = 1
Query: 214 MKHKTGCNMWVDQRALKLTITGPDVATVENAAKGVEAYIAAAPIK---AGAVEAAVTRNLECPPHLLDTLGDR--ATIARIVKETRAQVVVNKKMMRIIIRGNPHAV 519
++H++GC MWVDQ+ LKL ITG D+ + AA V I+ AP+ AG + + +ECPPHL+ L R +TI RI +E+RA VV+N+KMM++I+ G P +V
Sbjct: 59 LRHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSV 165 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15971.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig15971.1.1 >prot_P-wetherbeei_contig15971.1.1 ID=prot_P-wetherbeei_contig15971.1.1|Name=mRNA_P-wetherbeei_contig15971.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=268bp MMDPHAPQFEPLPSHHLATGGAGVLISSPGGRFQIKRCQGFVRCDMDIESback to top mRNA from alignment at P-wetherbeei_contig15971:374..1523+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig15971.1.1 ID=mRNA_P-wetherbeei_contig15971.1.1|Name=mRNA_P-wetherbeei_contig15971.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1150bp|location=Sequence derived from alignment at P-wetherbeei_contig15971:374..1523+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig15971:374..1523+ >mRNA_P-wetherbeei_contig15971.1.1 ID=mRNA_P-wetherbeei_contig15971.1.1|Name=mRNA_P-wetherbeei_contig15971.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=804bp|location=Sequence derived from alignment at P-wetherbeei_contig15971:374..1523+ (Phaeothamnion wetherbeei SAG_119_79)back to top |