mRNA_P-wetherbeei_contig1596.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1596.3.1
Unique NamemRNA_P-wetherbeei_contig1596.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1596.3.1 vs. uniprot
Match: A0A7S3UVE4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVE4_HETAK)

HSP 1 Score: 65.1 bits (157), Expect = 4.560e-7
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:  532 VMHVLMLACKALWPPELFSLAAASAAVSKDWRRETGGATTMTRHHFEESLFELADIWTDDLLPATYAAFLDDLYRAIT 765
            V  V +L CKAL+ P  FS+  A  AV +DW+RE+ G         ++S+FE+AD+WTD +  + Y  FL +LY+ IT
Sbjct:    3 VTFVNVLICKALFDPNEFSIDDAWKAVEEDWQRESHGEXXXXXXXLKDSVFEIADLWTDAVEVSAYVGFLRELYQCIT 80
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BLAST of mRNA_P-wetherbeei_contig1596.3.1 vs. uniprot
Match: A0A7S3UUC9_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUC9_HETAK)

HSP 1 Score: 65.1 bits (157), Expect = 5.980e-7
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:  532 VMHVLMLACKALWPPELFSLAAASAAVSKDWRRETGGATTMTRHHFEESLFELADIWTDDLLPATYAAFLDDLYRAIT 765
            V  V +L CKAL+ P  FS+  A  AV +DW+RE+ G         ++S+FE+AD+WTD +  + Y  FL +LY+ IT
Sbjct:    3 VTFVNVLICKALFDPNEFSIDDAWKAVEEDWQRESHGEXXXXXXXLKDSVFEIADLWTDAVEVSAYVGFLRELYQCIT 80
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1596.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3UVE4_HETAK4.560e-742.31Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3UUC9_HETAK5.980e-742.31Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1596contigP-wetherbeei_contig1596:2500..5653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5811.TGME49_119310
Model size3154
Max annot lvl5794|Apicomplexa
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.8e-11
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3YFZT@5794|Apicomplexa,3YJWQ@5796|Coccidia,3YU5N@5809|Sarcocystidae
DescriptionRibonuclease H protein
Cds size2658
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186072.8435674-UTR-P-wetherbeei_contig1596:2499..29951683186072.8435674-UTR-P-wetherbeei_contig1596:2499..2995Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1596 2500..2995 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186072.8543065-CDS-P-wetherbeei_contig1596:2995..56531683186072.8543065-CDS-P-wetherbeei_contig1596:2995..5653Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1596 2996..5653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1596.3.1prot_P-wetherbeei_contig1596.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1596 2996..5653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1596.3.1

>prot_P-wetherbeei_contig1596.3.1 ID=prot_P-wetherbeei_contig1596.3.1|Name=mRNA_P-wetherbeei_contig1596.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=886bp
MAKPFGSAPQHFTGPRAASILRLNSASQPTLHPHDADGDEKDEGSDDDCS
ESSSSSNSSSSSSDGSFNSTGGGGGRSRDEVRTHSAPHKLHNRATAPQLL
PRRSSFHGSVHVAVELLPVAKVDGYIHDGDEGFDAPVARATRAALRDQPP
VVAALRRFSETFEESARAGPDCFHRNAVMHVLMLACKALWPPELFSLAAA
SAAVSKDWRRETGGATTMTRHHFEESLFELADIWTDDLLPATYAAFLDDL
YRAITGDDAQPAGAGAAEAAAAVAGAKAGAAGRPGDGGAGAAAGTVLRHH
PFGDGGDSNAAGADGSSSATPALGRENGARAAFSKLQLLPPPAAEARRDC
AKDGGVATAGASDGGDGDGNSCNGGKGRASSISRSPPRQAFKRRRASAFH
SPSPPPQAAATTKTAGLLSNGKVAVGAAAIADVIAAAGSDTAVATAVATA
TAGENEWDVMVTPVPQARYKWTQLRADLQNVLAAVPYVPGNGGDSAAPAA
AWNAAMTAALMMRPAGRLVSGLAVVQLGVAVEGGGGDGGSNNGGSNNGSI
GQRDSGGRPRQNSLMRRSSGRGGSIGGSDSGSKTARRASLPEARSALALA
FGRTPQRPDADAVAAGGGECRGKPPTRVPRLLRCRHDSLGDDYSGGEPMP
RRRRSSGGDTGGGVGRPCPTGPHAAGPASRYVEVGAGGGGHPGAGGTFDD
GDENAGSIAKCHDASPPPGARRASRVDAPPGPRRASRVDAAAEAVLAATP
SGRRRSGSFSPSPPRRQSVRAPSRRRRPDLDATDDAAALAGDVEGGGNAS
GGGGDDDGSGYGGGGGGEPRFLSRRRRERARISGDAGASHKADVHGLSPP
PMLRRVSSRGRDGMQRSLRSIRDVGGTSIPVAPLQ*
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mRNA from alignment at P-wetherbeei_contig1596:2500..5653-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1596.3.1 ID=mRNA_P-wetherbeei_contig1596.3.1|Name=mRNA_P-wetherbeei_contig1596.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3154bp|location=Sequence derived from alignment at P-wetherbeei_contig1596:2500..5653- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAAAGCCCTTTGGCTCTGCGCCGCAACATTTCACGGGTCCACGGGC
CGCATCGATTTTGAGGTTAAACTCGGCCTCGCAGCCAACTCTACACCCAC
ACGACGCAGACGGAGATGAGAAGGACGAGGGCAGCGACGACGATTGCAGC
GAAAGCAGCAGCAGCAGCAACAGCAGCAGCAGTAGCAGCGATGGCAGCTT
CAACAGTACCGGTGGCGGCGGTGGCCGCAGTCGCGACGAAGTGCGAACTC
ATTCCGCTCCACATAAACTGCACAATCGCGCGACGGCGCCGCAGCTCCTG
CCCCGTCGCAGCAGCTTCCACGGCAGCGTCCACGTTGCCGTAGAGCTCCT
TCCTGTAGCAAAAGTTGACGGCTACATCCACGATGGCGACGAGGGCTTTG
ATGCGCCGGTCGCCCGCGCTACCCGCGCTGCGCTGCGCGACCAACCGCCC
GTCGTCGCAGCGCTGCGTCGCTTCTCCGAGACTTTCGAGGAGTCGGCCCG
CGCCGGCCCGGACTGCTTCCACCGCAACGCCGTCATGCACGTCCTGATGC
TCGCCTGCAAGGCGTTGTGGCCGCCGGAGCTGTTCTCGCTGGCGGCGGCG
TCGGCAGCTGTCAGTAAGGATTGGCGGCGTGAGACGGGCGGCGCCACCAC
CATGACGCGCCACCACTTTGAAGAGAGCCTCTTCGAGCTGGCGGACATTT
GGACGGACGACCTTCTCCCGGCGACGTACGCCGCCTTTCTGGATGACCTC
TACCGCGCCATCACCGGCGACGACGCACAGCCGGCGGGAGCAGGCGCAGC
AGAAGCGGCGGCGGCGGTGGCGGGGGCAAAAGCGGGCGCGGCCGGCAGGC
CCGGCGACGGCGGCGCCGGAGCTGCGGCGGGAACTGTTCTGCGCCACCAC
CCTTTCGGCGATGGAGGAGACAGCAATGCGGCCGGCGCGGATGGGAGTTC
GTCTGCTACTCCTGCGTTGGGACGCGAGAACGGTGCTCGAGCGGCCTTTT
CCAAGTTGCAGCTGCTGCCGCCGCCGGCGGCGGAGGCGAGACGAGATTGT
GCCAAAGACGGCGGCGTTGCCACTGCTGGCGCCAGTGACGGCGGCGATGG
CGATGGCAATAGCTGCAACGGTGGGAAGGGCCGTGCTTCCTCGATATCTC
GCTCCCCACCTCGCCAGGCCTTCAAGCGGCGGCGCGCGTCGGCCTTCCAT
TCGCCGTCGCCGCCGCCGCAGGCAGCTGCAACAACCAAGACGGCAGGGCT
CCTGTCGAACGGCAAAGTCGCCGTTGGTGCCGCCGCCATCGCCGATGTTA
TAGCCGCTGCCGGCAGCGACACGGCGGTGGCGACGGCGGTGGCGACGGCA
ACGGCAGGCGAAAATGAATGGGACGTGATGGTGACCCCGGTGCCGCAGGC
GCGATACAAGTGGACGCAGCTGCGGGCTGATTTGCAGAACGTTCTGGCGG
CGGTGCCGTACGTGCCGGGAAACGGCGGCGATTCCGCCGCTCCCGCGGCG
GCATGGAACGCTGCCATGACGGCAGCGCTGATGATGCGTCCCGCGGGCCG
CCTTGTGTCCGGCCTCGCGGTAGTGCAGCTCGGGGTTGCTGTAGAGGGCG
GCGGCGGCGACGGCGGCAGCAATAACGGCGGCAGCAATAACGGCAGCATT
GGACAGCGAGACAGCGGCGGCCGCCCGCGGCAGAACAGCCTTATGAGGCG
CAGTAGCGGTCGCGGCGGCAGCATTGGCGGCAGCGACAGCGGCAGCAAGA
CGGCACGGCGCGCCTCGCTTCCAGAAGCGCGATCTGCCTTGGCGCTAGCT
TTTGGGAGGACGCCACAGCGCCCCGATGCCGATGCCGTCGCGGCTGGCGG
CGGCGAGTGCAGAGGCAAGCCTCCGACACGGGTGCCGCGGCTTCTGCGCT
GCCGCCATGACTCTCTCGGCGACGATTACAGCGGTGGCGAGCCAATGCCG
CGCCGCCGCCGCTCATCCGGCGGCGACACTGGCGGTGGGGTCGGCAGGCC
GTGCCCAACAGGGCCGCATGCCGCCGGGCCGGCCTCCCGGTACGTCGAAG
TGGGCGCCGGTGGAGGCGGCCATCCCGGCGCCGGCGGCACCTTCGACGAC
GGTGACGAGAACGCCGGCTCCATCGCCAAGTGCCACGACGCGTCGCCGCC
GCCGGGGGCGCGCCGGGCGAGCCGTGTGGACGCGCCGCCGGGGCCGCGCC
GGGCGAGCCGTGTGGATGCGGCGGCGGAGGCGGTGCTCGCCGCGACGCCA
TCGGGGCGGCGGCGCTCTGGCTCCTTCTCGCCGTCGCCGCCGCGACGTCA
GAGCGTGCGGGCGCCATCGCGGCGGCGCCGCCCAGACCTTGACGCGACGG
ACGACGCTGCCGCGCTTGCCGGCGACGTAGAAGGCGGCGGCAATGCATCT
GGCGGCGGCGGTGACGACGACGGCAGCGGCTATGGCGGCGGTGGCGGCGG
CGAGCCGCGCTTTCTGTCTCGCCGGCGGCGAGAGAGGGCTCGCATCAGCG
GCGATGCCGGCGCCAGCCACAAGGCGGACGTGCACGGACTCTCGCCGCCC
CCGATGCTTCGTCGCGTCAGCAGCCGCGGCCGGGACGGCATGCAGCGGTC
ACTGCGAAGCATCCGCGACGTCGGCGGCACCTCCATCCCCGTCGCGCCAC
TGCAGTGAGCGACGAGGGGTGAGGGTGTCTCTTTCGTTGTTTGATCTTTT
AGTGATTTGGCGGTTGTTTTGGAAAGGTGGAAAGATTATTCTAGGAAAGG
CGGCTGGAATTTCGTCCGTCTGTAGCGTGCGCGTGTCCATGTGAGCGGAG
TAGTTGGGCGGGTTTAGACCACTAGAAACCACAGCGGAATGGTGGATGGT
TTGGTGAAACCACAGTGTGGGCGTATTCGGAGGTAGCGGCGGCGGCGGCG
GCGGCGGCGGCGGCATTCTTTAGCTAGAAGCGGGGCGCAGCCGCGTGACT
AGGCCGGGCTGTTCGCGGGCCAGTGTTTGGGCGGCTTGGCGGCTTGGGCG
CGAGAAGTGACAGATATCATCGGGATGACAGCTGGAGTTCCCATCCCGGA
AACGCTCAGCCGCCGGACGGAGGCCGTGGTCATACAAAGCGGGTGGCATG
GCGGAACACGCCTCTGACGAGGAGAAAGAAGGATCACAGGAACACTGGAA
TTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1596:2500..5653-

>mRNA_P-wetherbeei_contig1596.3.1 ID=mRNA_P-wetherbeei_contig1596.3.1|Name=mRNA_P-wetherbeei_contig1596.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2658bp|location=Sequence derived from alignment at P-wetherbeei_contig1596:2500..5653- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAAAGCCCTTTGGCTCTGCGCCGCAACATTTCACGGGTCCACGGGC
CGCATCGATTTTGAGGTTAAACTCGGCCTCGCAGCCAACTCTACACCCAC
ACGACGCAGACGGAGATGAGAAGGACGAGGGCAGCGACGACGATTGCAGC
GAAAGCAGCAGCAGCAGCAACAGCAGCAGCAGTAGCAGCGATGGCAGCTT
CAACAGTACCGGTGGCGGCGGTGGCCGCAGTCGCGACGAAGTGCGAACTC
ATTCCGCTCCACATAAACTGCACAATCGCGCGACGGCGCCGCAGCTCCTG
CCCCGTCGCAGCAGCTTCCACGGCAGCGTCCACGTTGCCGTAGAGCTCCT
TCCTGTAGCAAAAGTTGACGGCTACATCCACGATGGCGACGAGGGCTTTG
ATGCGCCGGTCGCCCGCGCTACCCGCGCTGCGCTGCGCGACCAACCGCCC
GTCGTCGCAGCGCTGCGTCGCTTCTCCGAGACTTTCGAGGAGTCGGCCCG
CGCCGGCCCGGACTGCTTCCACCGCAACGCCGTCATGCACGTCCTGATGC
TCGCCTGCAAGGCGTTGTGGCCGCCGGAGCTGTTCTCGCTGGCGGCGGCG
TCGGCAGCTGTCAGTAAGGATTGGCGGCGTGAGACGGGCGGCGCCACCAC
CATGACGCGCCACCACTTTGAAGAGAGCCTCTTCGAGCTGGCGGACATTT
GGACGGACGACCTTCTCCCGGCGACGTACGCCGCCTTTCTGGATGACCTC
TACCGCGCCATCACCGGCGACGACGCACAGCCGGCGGGAGCAGGCGCAGC
AGAAGCGGCGGCGGCGGTGGCGGGGGCAAAAGCGGGCGCGGCCGGCAGGC
CCGGCGACGGCGGCGCCGGAGCTGCGGCGGGAACTGTTCTGCGCCACCAC
CCTTTCGGCGATGGAGGAGACAGCAATGCGGCCGGCGCGGATGGGAGTTC
GTCTGCTACTCCTGCGTTGGGACGCGAGAACGGTGCTCGAGCGGCCTTTT
CCAAGTTGCAGCTGCTGCCGCCGCCGGCGGCGGAGGCGAGACGAGATTGT
GCCAAAGACGGCGGCGTTGCCACTGCTGGCGCCAGTGACGGCGGCGATGG
CGATGGCAATAGCTGCAACGGTGGGAAGGGCCGTGCTTCCTCGATATCTC
GCTCCCCACCTCGCCAGGCCTTCAAGCGGCGGCGCGCGTCGGCCTTCCAT
TCGCCGTCGCCGCCGCCGCAGGCAGCTGCAACAACCAAGACGGCAGGGCT
CCTGTCGAACGGCAAAGTCGCCGTTGGTGCCGCCGCCATCGCCGATGTTA
TAGCCGCTGCCGGCAGCGACACGGCGGTGGCGACGGCGGTGGCGACGGCA
ACGGCAGGCGAAAATGAATGGGACGTGATGGTGACCCCGGTGCCGCAGGC
GCGATACAAGTGGACGCAGCTGCGGGCTGATTTGCAGAACGTTCTGGCGG
CGGTGCCGTACGTGCCGGGAAACGGCGGCGATTCCGCCGCTCCCGCGGCG
GCATGGAACGCTGCCATGACGGCAGCGCTGATGATGCGTCCCGCGGGCCG
CCTTGTGTCCGGCCTCGCGGTAGTGCAGCTCGGGGTTGCTGTAGAGGGCG
GCGGCGGCGACGGCGGCAGCAATAACGGCGGCAGCAATAACGGCAGCATT
GGACAGCGAGACAGCGGCGGCCGCCCGCGGCAGAACAGCCTTATGAGGCG
CAGTAGCGGTCGCGGCGGCAGCATTGGCGGCAGCGACAGCGGCAGCAAGA
CGGCACGGCGCGCCTCGCTTCCAGAAGCGCGATCTGCCTTGGCGCTAGCT
TTTGGGAGGACGCCACAGCGCCCCGATGCCGATGCCGTCGCGGCTGGCGG
CGGCGAGTGCAGAGGCAAGCCTCCGACACGGGTGCCGCGGCTTCTGCGCT
GCCGCCATGACTCTCTCGGCGACGATTACAGCGGTGGCGAGCCAATGCCG
CGCCGCCGCCGCTCATCCGGCGGCGACACTGGCGGTGGGGTCGGCAGGCC
GTGCCCAACAGGGCCGCATGCCGCCGGGCCGGCCTCCCGGTACGTCGAAG
TGGGCGCCGGTGGAGGCGGCCATCCCGGCGCCGGCGGCACCTTCGACGAC
GGTGACGAGAACGCCGGCTCCATCGCCAAGTGCCACGACGCGTCGCCGCC
GCCGGGGGCGCGCCGGGCGAGCCGTGTGGACGCGCCGCCGGGGCCGCGCC
GGGCGAGCCGTGTGGATGCGGCGGCGGAGGCGGTGCTCGCCGCGACGCCA
TCGGGGCGGCGGCGCTCTGGCTCCTTCTCGCCGTCGCCGCCGCGACGTCA
GAGCGTGCGGGCGCCATCGCGGCGGCGCCGCCCAGACCTTGACGCGACGG
ACGACGCTGCCGCGCTTGCCGGCGACGTAGAAGGCGGCGGCAATGCATCT
GGCGGCGGCGGTGACGACGACGGCAGCGGCTATGGCGGCGGTGGCGGCGG
CGAGCCGCGCTTTCTGTCTCGCCGGCGGCGAGAGAGGGCTCGCATCAGCG
GCGATGCCGGCGCCAGCCACAAGGCGGACGTGCACGGACTCTCGCCGCCC
CCGATGCTTCGTCGCGTCAGCAGCCGCGGCCGGGACGGCATGCAGCGGTC
ACTGCGAAGCATCCGCGACGTCGGCGGCACCTCCATCCCCGTCGCGCCAC
TGCAGTGA
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