mRNA_P-wetherbeei_contig15951.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15951.1.1
Unique NamemRNA_P-wetherbeei_contig15951.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15951.1.1 vs. uniprot
Match: A0A196SJP5_BLAHN (Surfeit locus protein 2 n=2 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SJP5_BLAHN)

HSP 1 Score: 47.8 bits (112), Expect = 8.160e-5
Identity = 18/49 (36.73%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   25 EARALVTQHDFLSVNSFGKVHCAITGHDLPAAVTEIQRHLDSKSFRVAK 171
            E +A + ++    +NS+GKVHC +T HD+ A ++E+++H+ S  +  AK
Sbjct:    4 ELKAFLDENPEFELNSYGKVHCNVTNHDIVAKMSEVEKHMKSAKYLHAK 52
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15951.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A196SJP5_BLAHN8.160e-536.73Surfeit locus protein 2 n=2 Tax=Blastocystis sp. s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15951contigP-wetherbeei_contig15951:107..286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G730
Preferred nameSurf2
PFAMsSURF2
Model size180
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005886,GO:0016020,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0070013,GO:0071944
Exons1
Evalue4.75e-06
EggNOG OGs2A8IF@1|root,2QW1X@2759|Eukaryota
DescriptionSurfeit locus protein 2 (SURF2)
Cds size180
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186072.630596-CDS-P-wetherbeei_contig15951:106..2861683186072.630596-CDS-P-wetherbeei_contig15951:106..286Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15951 107..286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15951.1.1prot_P-wetherbeei_contig15951.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15951 107..286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15951.1.1

>prot_P-wetherbeei_contig15951.1.1 ID=prot_P-wetherbeei_contig15951.1.1|Name=mRNA_P-wetherbeei_contig15951.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=60bp
MATDAGKAEARALVTQHDFLSVNSFGKVHCAITGHDLPAAVTEIQRHLDS
KSFRVAKAR*
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mRNA from alignment at P-wetherbeei_contig15951:107..286-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15951.1.1 ID=mRNA_P-wetherbeei_contig15951.1.1|Name=mRNA_P-wetherbeei_contig15951.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig15951:107..286- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCACCGACGCGGGAAAGGCCGAAGCTCGCGCGCTGGTAACCCAACA
TGACTTCCTTTCCGTGAATTCTTTTGGCAAAGTTCATTGTGCGATCACGG
GGCACGACCTTCCCGCAGCAGTCACCGAGATTCAACGGCACTTGGATAGC
AAGAGCTTCAGAGTAGCGAAAGCAAGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15951:107..286-

>mRNA_P-wetherbeei_contig15951.1.1 ID=mRNA_P-wetherbeei_contig15951.1.1|Name=mRNA_P-wetherbeei_contig15951.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig15951:107..286- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCACCGACGCGGGAAAGGCCGAAGCTCGCGCGCTGGTAACCCAACA
TGACTTCCTTTCCGTGAATTCTTTTGGCAAAGTTCATTGTGCGATCACGG
GGCACGACCTTCCCGCAGCAGTCACCGAGATTCAACGGCACTTGGATAGC
AAGAGCTTCAGAGTAGCGAAAGCAAGGTGA
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