mRNA_P-wetherbeei_contig15943.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15943.3.1
Unique NamemRNA_P-wetherbeei_contig15943.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15943.3.1 vs. uniprot
Match: A0A0Q7U259_9HYPH (Uncharacterized protein n=2 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7U259_9HYPH)

HSP 1 Score: 55.1 bits (131), Expect = 9.780e-7
Identity = 43/127 (33.86%), Postives = 61/127 (48.03%), Query Frame = 1 
Query:    7 GLLALYLWVAMQEGPFVGLGVVALTTAALAAILFTVAATRGGKPKRPRVHVAPAVVTAEPVPAPPPHASLMDTVTHNLTHRTAAAT----NEALDSAAEIVRKGPREAVLATLAVAVVVGLFIGRRR 375
            GL+ALY  VA+  GPF G          ++ ++FT  A R  +  +P +         +             +   +   RT A T     +A+D+A  IVR G REAVLATLA  VV+G+ +GRRR
Sbjct:   61 GLVALYYAVALTHGPFAGFAAAGGAALVISLVIFTALAVRANRTTQPSLGAKLGRAAKDDW-------RRTQSAAGSTAGRTQADTLALGKQAVDTATGIVRDGSREAVLATLAATVVIGMLVGRRR 180
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15943.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0Q7U259_9HYPH9.780e-733.86Uncharacterized protein n=2 Tax=Pseudolabrys sp. R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15943contigP-wetherbeei_contig15943:1185..1562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size378
Hectar predicted targeting categorychloroplast
Exons1
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186072.4357288-CDS-P-wetherbeei_contig15943:1184..15621683186072.4357288-CDS-P-wetherbeei_contig15943:1184..1562Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15943 1185..1562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15943.3.1prot_P-wetherbeei_contig15943.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15943 1185..1562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15943.3.1

>prot_P-wetherbeei_contig15943.3.1 ID=prot_P-wetherbeei_contig15943.3.1|Name=mRNA_P-wetherbeei_contig15943.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
IAGLLALYLWVAMQEGPFVGLGVVALTTAALAAILFTVAATRGGKPKRPR
VHVAPAVVTAEPVPAPPPHASLMDTVTHNLTHRTAAATNEALDSAAEIVR
KGPREAVLATLAVAVVVGLFIGRRR*
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mRNA from alignment at P-wetherbeei_contig15943:1185..1562-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15943.3.1 ID=mRNA_P-wetherbeei_contig15943.3.1|Name=mRNA_P-wetherbeei_contig15943.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig15943:1185..1562- (Phaeothamnion wetherbeei SAG_119_79)
ATCGCAGGCCTTCTCGCGCTCTATCTCTGGGTCGCGATGCAGGAGGGCCC
GTTCGTCGGGCTTGGTGTCGTCGCGCTCACCACGGCGGCGCTGGCGGCGA
TCCTGTTCACCGTCGCTGCCACGCGCGGCGGCAAGCCGAAACGTCCGCGG
GTTCATGTTGCGCCAGCAGTCGTGACGGCGGAGCCGGTGCCCGCGCCGCC
GCCCCATGCGTCGCTGATGGATACGGTGACGCACAACCTGACGCACCGCA
CCGCGGCCGCGACCAACGAGGCGCTGGATTCCGCGGCCGAGATCGTTCGC
AAGGGTCCGCGCGAGGCGGTGCTGGCGACACTGGCGGTTGCAGTCGTGGT
CGGATTGTTCATCGGCCGGCGGCGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15943:1185..1562-

>mRNA_P-wetherbeei_contig15943.3.1 ID=mRNA_P-wetherbeei_contig15943.3.1|Name=mRNA_P-wetherbeei_contig15943.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig15943:1185..1562- (Phaeothamnion wetherbeei SAG_119_79)
ATCGCAGGCCTTCTCGCGCTCTATCTCTGGGTCGCGATGCAGGAGGGCCC
GTTCGTCGGGCTTGGTGTCGTCGCGCTCACCACGGCGGCGCTGGCGGCGA
TCCTGTTCACCGTCGCTGCCACGCGCGGCGGCAAGCCGAAACGTCCGCGG
GTTCATGTTGCGCCAGCAGTCGTGACGGCGGAGCCGGTGCCCGCGCCGCC
GCCCCATGCGTCGCTGATGGATACGGTGACGCACAACCTGACGCACCGCA
CCGCGGCCGCGACCAACGAGGCGCTGGATTCCGCGGCCGAGATCGTTCGC
AAGGGTCCGCGCGAGGCGGTGCTGGCGACACTGGCGGTTGCAGTCGTGGT
CGGATTGTTCATCGGCCGGCGGCGGTAG
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