mRNA_P-wetherbeei_contig15935.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15935.1.1
Unique NamemRNA_P-wetherbeei_contig15935.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15935.1.1 vs. uniprot
Match: A0A847ZYA2_9HYPH (Undecaprenyl-diphosphatase n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZYA2_9HYPH)

HSP 1 Score: 358 bits (920), Expect = 1.620e-122
Identity = 184/257 (71.60%), Postives = 225/257 (87.55%), Query Frame = 1
Query:    1 MSLEQIVVLALIQGITEFLPISSSGHLILVPALTGWPDQGVVTDMVTNLGTLAAVIIYFWRDVIHMFWGAIDLVRRRTSHNADLAFHVLIGTIPIIVVGLLLKLTHLDDHIRSATLVAINAIVFGLLLYAADTYGLLRRTIVDMNWKSSLIIGGAQALSLSPGTSRSGVTMTAARGLGFTRTEAARFSFLLSIPANGAASLLIIGNALESGETISGAVIITGILTFFIALGTITVLMRMIRTISFLPFVIYRLQFGS 771
            M+L QI+VL+LIQGITEFLPISSSGHLILVPALTGW DQG++TDMVTN+G+L+AVIIYFWRDV+ M  GA+DLVRRR S NA L  ++ +GT+PI+VVGL++K T LDDHIR+ TLVA+NAIVFG+LLYAAD +GLL RT+ +M+WK++LIIG AQALSLSPGTSRSG+TMTA R LG+ R EAARFSFLLSIPANGAAS L+IG+AL SG++++G V++TG+LTFF+AL  I  LMRM+RT+SFLPFVIYR+  G 
Sbjct:    1 MTLVQIIVLSLIQGITEFLPISSSGHLILVPALTGWKDQGILTDMVTNVGSLSAVIIYFWRDVVAMMRGALDLVRRRMSANARLVVNIAVGTVPIVVVGLVMKATGLDDHIRNTTLVAVNAIVFGILLYAADAFGLLTRTMREMSWKAALIIGCAQALSLSPGTSRSGITMTAGRALGYLRPEAARFSFLLSIPANGAASALVIGDALSSGQSLTGDVVMTGVLTFFVALLAIAFLMRMLRTMSFLPFVIYRVILGG 257          
BLAST of mRNA_P-wetherbeei_contig15935.1.1 vs. uniprot
Match: A0A537P6J1_9PROT (Undecaprenyl-diphosphatase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537P6J1_9PROT)

HSP 1 Score: 329 bits (844), Expect = 5.830e-111
Identity = 169/258 (65.50%), Postives = 210/258 (81.40%), Query Frame = 1
Query:    1 MSLEQIVVLALIQGITEFLPISSSGHLILVPALTGWPDQGVVTDMVTNLGTLAAVIIYFWRDVIHMFWGAIDLVRRRTSHNADLAFHVLIGTIPIIVVGLLLKLTHLDDHIRSATLVAINAIVFGLLLYAADTYGLLRRTIVDMNWKSSLIIGGAQALSLSPGTSRSGVTMTAARGLGFTRTEAARFSFLLSIPANGAASLLIIGNALESGETISGAVIITGILTFFIALGTITVLMRMIRTISFLPFVIYRLQFGSV 774
            M +EQI++LALIQGITEFLP+SSSGHLIL PAL  W DQGV+TD++T++G+L AV++YFWRDV+ MFWG ID +R R + N  LAF+VLIGTIPII+VG  LK T L DH+RS TLVA+NAIVFG+L+Y ADT+GL+RR + DM W  +LIIG AQ+L+L+PGTSRSG+TMTAARG GF R EAAR+SFLLSIPA  AA LLIIG+A+E+G  I+   II G LTF +AL TI  LM+++R +SFLPFVIYR+  G +
Sbjct:    1 MPIEQILILALIQGITEFLPVSSSGHLILAPALFHWADQGVLTDVMTHMGSLLAVLVYFWRDVVAMFWGCIDALRGRITANGRLAFYVLIGTIPIILVGAALKFTGLSDHLRSVTLVAVNAIVFGILMYIADTFGLMRRKVSDMTWVPALIIGIAQSLALNPGTSRSGITMTAARGFGFERPEAARYSFLLSIPATAAAGLLIIGDAVENGVAITWDAIICGALTFVVALATIAFLMQLVRRMSFLPFVIYRIALGVI 258          
BLAST of mRNA_P-wetherbeei_contig15935.1.1 vs. uniprot
Match: UPI0018C76E0B (undecaprenyl-diphosphate phosphatase n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI0018C76E0B)

HSP 1 Score: 323 bits (827), Expect = 2.310e-108
Identity = 171/257 (66.54%), Postives = 208/257 (80.93%), Query Frame = 1
Query:    1 MSLEQIVVLALIQGITEFLPISSSGHLILVPALTGWPDQGVVTDMVTNLGTLAAVIIYFWRDVIHMFWGAIDLVRRRTSHNADLAFHVLIGTIPIIVVGLLLKLTHLDDHIRSATLVAINAIVFGLLLYAADTYGLLRRTIVDMNWKSSLIIGGAQALSLSPGTSRSGVTMTAARGLGFTRTEAARFSFLLSIPANGAASLLIIGNALESGETISGAVIITGILTFFIALGTITVLMRMIRTISFLPFVIYRLQFGS 771
            MSL QIVVLALIQGITE+LPISS+GHLILVPA TGWPDQG VTDMVTNLGT+ A I+YFWRDV+ M  G +D+V+RR+SH+A L  +V++ TIPII+ GL++K   L DH+RS  +VAIN+IVFGLLLY AD+YG  R TI D+NWK+SLIIG  Q L+L+PGTSRSG+TMT  R LGF R++AARFSFL+SIPAN AAS  ++G+A+++GE+IS   II G+LTFFI LGTI  LM  IR  S LPFVIYR+  GS
Sbjct:    2 MSLLQIVVLALIQGITEYLPISSTGHLILVPAFTGWPDQGFVTDMVTNLGTVTATIVYFWRDVVSMLQGLVDIVKRRSSHSARLVTNVIVATIPIIIFGLVIKKLGLVDHLRSPLIVAINSIVFGLLLYVADSYGKQRNTIRDLNWKNSLIIGLFQCLALNPGTSRSGITMTGGRFLGFMRSDAARFSFLISIPANLAASAKVLGDAVQAGESISFDQIICGVLTFFIGLGTIHFLMNYIRNRSLLPFVIYRVILGS 258          
BLAST of mRNA_P-wetherbeei_contig15935.1.1 vs. uniprot
Match: A0A2W2C8W3_9HYPH (Undecaprenyl-diphosphatase n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2C8W3_9HYPH)

HSP 1 Score: 276 bits (706), Expect = 5.420e-90
Identity = 147/255 (57.65%), Postives = 192/255 (75.29%), Query Frame = 1
Query:   13 QIVVLALIQGITEFLPISSSGHLILVPALTGWPDQGVVTDMVTNLGTLAAVIIYFWRDVIHMFWGAIDLVRRRTSHNADLAFHVLIGTIPIIVVGLLL-KLTHLDDHIRSATLVAINAIVFGLLLYAADTYGLLRRTIVDMNWKSSLIIGGAQALSLSPGTSRSGVTMTAARGLGFTRTEAARFSFLLSIPANGAASLLIIGNALESGETISGAVIITGILTFFIALGTITVLMRMIRTISFLPFVIYRLQFGSV 774
            QIVVLALIQGITEFLPISSSGHL+LVP LTGWPDQGV+TD++ ++G+  AVI+YFW+D +++  G +DL R R S    LA  +++GTIP +V G+LL KL  +D   +   +VA NAIVFG+LLY  D +G+  R + DM W  +LIIG AQA++L PG SRSG+TMTAAR LGF R E+ARF+FLL IPA   A +L +G A+ +G  +S  +++T ILTFF+ALGTITVLM+++R +SFLPF IYR+  G V
Sbjct:    5 QIVVLALIQGITEFLPISSSGHLLLVPVLTGWPDQGVLTDVMVHMGSFLAVIVYFWKDCVNLLMGLVDLARGRRSAWGRLALLIVLGTIPAVVAGVLLDKLGFMDLVRQMPIIVAWNAIVFGILLYVCDRFGMSTRRMADMTWVPALIIGLAQAVALIPGVSRSGITMTAARALGFERPESARFAFLLGIPAIAGAGVLKLGEAVHTGAHVSFGMVLTMILTFFVALGTITVLMKLVRHMSFLPFAIYRVALGVV 259          
BLAST of mRNA_P-wetherbeei_contig15935.1.1 vs. uniprot
Match: A0A7Y2BSZ9_9HYPH (Undecaprenyl-diphosphatase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7Y2BSZ9_9HYPH)

HSP 1 Score: 276 bits (705), Expect = 7.190e-90
Identity = 144/258 (55.81%), Postives = 195/258 (75.58%), Query Frame = 1
Query:    1 MSLEQIVVLALIQGITEFLPISSSGHLILVPALTGWPDQGVVTDMVTNLGTLAAVIIYFWRDVIHMFWGAIDLVRRRTSHNADLAFHVLIGTIPIIVVGLLLKLTHLDDHIRSATLVAINAIVFGLLLYAADTYGLLRRTIVDMNWKSSLIIGGAQALSLSPGTSRSGVTMTAARGLGFTRTEAARFSFLLSIPANGAASLLIIGNALESGETISGAVIITGILTFFIALGTITVLMRMIRTISFLPFVIYRLQFGSV 774
            M +EQI+VLA+IQGITEFLPISSSGHLILVPALTGWPDQG++TD++ ++G+  AV++YF RDV+++  G ++L+R R + +  +A +++  TIP +V GL L+ T   + +R   +VA NAI+FG+++Y AD +G   R +  M +  ++IIG AQAL++ PGTSRSG+TM+AAR LGFTR EAARFSFLL IPA   A +L++G+AL SGETIS + ++TG LTF  ALG I  LM M+R +S LPFVIYRL  G V
Sbjct:    1 MLIEQIIVLAIIQGITEFLPISSSGHLILVPALTGWPDQGLITDVMVHMGSFLAVLVYFRRDVLNLIIGGLELLRGRWTDDGRMALYIVAATIPAVVFGLTLQKTGFLEMVRGPQIVAWNAIIFGIVMYVADRFGEQVRAMEQMKFAPAMIIGVAQALAIIPGTSRSGITMSAARALGFTRPEAARFSFLLGIPAIAGAGILVLGDALASGETISMSAVVTGALTFLTALGAIAFLMAMVRRMSLLPFVIYRLVLGIV 258          
BLAST of mRNA_P-wetherbeei_contig15935.1.1 vs. uniprot
Match: A0A327JTY8_9HYPH (Undecaprenyl-diphosphatase n=1 Tax=Rhodobium orientis TaxID=34017 RepID=A0A327JTY8_9HYPH)

HSP 1 Score: 274 bits (700), Expect = 4.400e-89
Identity = 143/253 (56.52%), Postives = 191/253 (75.49%), Query Frame = 1
Query:    1 MSLEQIVVLALIQGITEFLPISSSGHLILVPALTGWPDQGVVTDMVTNLGTLAAVIIYFWRDVIHMFWGAIDLVRRRTSHNADLAFHVLIGTIPIIVVGLLLKLTHLDDHIRSATLVAINAIVFGLLLYAADTYGLLRRTIVDMNWKSSLIIGGAQALSLSPGTSRSGVTMTAARGLGFTRTEAARFSFLLSIPANGAASLLIIGNALESGETISGAVIITGILTFFIALGTITVLMRMIRTISFLPFVIYRL 759
            MS+EQIVVLA++QGITEFLPISSSGHLIL+PALTGWPDQG++TD++ ++G+L A+++YFWRDV+ +  G +DL R R +  A LA ++++GTIP +VVGL+ KLT   D+IR   +VA NA++FG+LLY AD +G   +++ +M +  ++IIG AQ+L+L PGTSRSG+TMTAAR +GF R E+ARFSFLL +PA  AA LL    A E+GE I         LTFF AL  I  LM +++ +SFLPFVIYRL
Sbjct:    1 MSIEQIVVLAIVQGITEFLPISSSGHLILIPALTGWPDQGLITDVMVHVGSLFAILVYFWRDVLTILKGCVDLARLRWTWAARLAAYIIVGTIPAVVVGLIFKLTGFLDYIRGVEIVAWNAVIFGILLYVADAFGPRLKSMAEMRFGPAIIIGIAQSLALVPGTSRSGITMTAARAMGFRRDESARFSFLLGVPAISAAGLLTFLEAYETGEPIPTDAFYAAGLTFFSALAAIAFLMAIVKRMSFLPFVIYRL 253          
BLAST of mRNA_P-wetherbeei_contig15935.1.1 vs. uniprot
Match: A0A5J4E0Y0_9BACT (Undecaprenyl-diphosphatase n=1 Tax=bacterium MnTg02 TaxID=2080452 RepID=A0A5J4E0Y0_9BACT)

HSP 1 Score: 263 bits (673), Expect = 4.060e-85
Identity = 141/257 (54.86%), Postives = 185/257 (71.98%), Query Frame = 1
Query:    1 MSLEQIVVLALIQGITEFLPISSSGHLILVPALTGWPDQGVVTDMVTNLGTLAAVIIYFWRDVIHMFWGAIDLVRRRTSHNADLAFHVLIGTIPIIVVGLLLKLTHLDDHIRSATLVAINAIVFGLLLYAADTYGLLRRTIVDMNWKSSLIIGGAQALSLSPGTSRSGVTMTAARGLGFTRTEAARFSFLLSIPANGAASLLIIGNALESGETISGAVIITGILTFFIALGTITVLMRMIRTISFLPFVIYRLQFGS 771
            M LEQI+VLA++QGITEFLPISSSGHLIL+PALT WPDQG+VTD++ ++G+L A+I+YFWRDV+ +F G+ DLVR   +  A L   + + TIP I+VG+  K+T   D +R   +VA NAI+FG+ LY AD YG   R + D+    +LIIG +QAL+L PGTSRSG+T+TAAR LGF R EAARFSFLL IPA   A LL I +  E G ++    ++   LTFF A+ +I  LM ++R +SFLPFV+YRL  G+
Sbjct:    1 MPLEQIIVLAIVQGITEFLPISSSGHLILIPALTSWPDQGLVTDVMVHMGSLFAIIVYFWRDVLRLFKGSWDLVRFNITKEAKLVLLIALATIPAIIVGVTFKMTGFLDQVRGIKIVAWNAIIFGVFLYLADRYGHRFRKMADITLAPALIIGLSQALALVPGTSRSGITITAARALGFERAEAARFSFLLGIPAIAGAGLLTIFDLHEQGLSVPPDALLAAGLTFFSAIASIAFLMAVVRRMSFLPFVLYRLALGA 257          
BLAST of mRNA_P-wetherbeei_contig15935.1.1 vs. uniprot
Match: A0A849EB07_9HYPH (Undecaprenyl-diphosphatase n=1 Tax=Anderseniella sp. TaxID=1872568 RepID=A0A849EB07_9HYPH)

HSP 1 Score: 262 bits (669), Expect = 2.130e-84
Identity = 141/257 (54.86%), Postives = 185/257 (71.98%), Query Frame = 1
Query:    1 MSLEQIVVLALIQGITEFLPISSSGHLILVPALTGWPDQGVVTDMVTNLGTLAAVIIYFWRDVIHMFWGAIDLVRRRTSHNADLAFHVLIGTIPIIVVGLLLKLTHLDDHIRSATLVAINAIVFGLLLYAADTYGLLRRTIVDMNWKSSLIIGGAQALSLSPGTSRSGVTMTAARGLGFTRTEAARFSFLLSIPANGAASLLIIGNALESGETISGAVIITGILTFFIALGTITVLMRMIRTISFLPFVIYRLQFGS 771
            M LEQI+VLA+IQGITEFLPISSSGHLILVPALTGW DQG++ D++ ++G+  AVI YFWRDV+ +  G ++L+R R + +  L   +++ TIP +  GL +K T + D +R   +VA NAI+FGLL+Y AD  G   + + DM +  +LIIG AQA ++ PGTSRSG+TMTAAR LGF R+EAARFSFL+ IPA   A +L++G A+  G TISG  I+TGILTFF AL  I  LM +++  S   FVIYRL  G+
Sbjct:    1 MFLEQIIVLAIIQGITEFLPISSSGHLILVPALTGWKDQGLIVDVMVHMGSFLAVITYFWRDVLALTVGGLNLLRGRMTDHGRLGLLIIVATIPAVAFGLFVKKTGMIDAVRGPEIVAWNAIIFGLLMYVADRLGKHVKAMEDMTFMPALIIGLAQAFAIIPGTSRSGITMTAARMLGFQRSEAARFSFLVGIPAIAGAGVLVLGEAISDGATISGDAILTGILTFFTALAAIWFLMAIVKRYSLTIFVIYRLILGA 257          
BLAST of mRNA_P-wetherbeei_contig15935.1.1 vs. uniprot
Match: A0A6G6WU18_9HYPH (Undecaprenyl-diphosphatase n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A6G6WU18_9HYPH)

HSP 1 Score: 262 bits (669), Expect = 2.200e-84
Identity = 138/259 (53.28%), Postives = 186/259 (71.81%), Query Frame = 1
Query:    1 MSLEQIVVLALIQGITEFLPISSSGHLILVPALTGWPDQGVVTDMVTNLGTLAAVIIYFWRDVIHMFWGAIDLVRRRTSHNADLAFHVLIGTIPIIVVGLLLKLTHLDDHIRSAT-LVAINAIVFGLLLYAADTYGLLRRTIVDMNWKSSLIIGGAQALSLSPGTSRSGVTMTAARGLGFTRTEAARFSFLLSIPANGAASLLIIGNALESGETISGAVIITGILTFFIALGTITVLMRMIRTISFLPFVIYRLQFGSV 774
            M +EQI++LALIQGITEFLPISSSGHL+LVP LTGWPDQG++TD++ ++G+  AV++YFWRD++ +  GAIDL+R R +    LA  ++  TIP +++G +L      D  RS   LVA NAI+FG+LLY  D YGL  + + +M +  ++IIG AQA+++ PGTSRSG+TMTA R LGF R EAARFSFLL IPA   A +L +G A+  G  ISG  ++T   TF +AL TI VLM++++  SFLPF IYR+  G +
Sbjct:    1 MPIEQILILALIQGITEFLPISSSGHLLLVPLLTGWPDQGLMTDVMVHMGSFLAVVVYFWRDILKLIGGAIDLLRGRMTVWGKLALFIIAATIPAVILGPILDKIGFMDAARSMPQLVAWNAIIFGILLYLCDRYGLWVKRMENMTFGQAMIIGVAQAIAIIPGTSRSGITMTAGRALGFERPEAARFSFLLGIPAIAGAGVLKLGTAISEGHPISGDQLLTAAFTFIVALATIAVLMKLVKVTSFLPFAIYRVALGVI 259          
BLAST of mRNA_P-wetherbeei_contig15935.1.1 vs. uniprot
Match: A0A0A8JZL0_9HYPH (Undecaprenyl-diphosphatase n=4 Tax=Methyloceanibacter TaxID=1484898 RepID=A0A0A8JZL0_9HYPH)

HSP 1 Score: 258 bits (658), Expect = 7.620e-83
Identity = 137/257 (53.31%), Postives = 183/257 (71.21%), Query Frame = 1
Query:    1 MSLEQIVVLALIQGITEFLPISSSGHLILVPALTGWPDQGVVTDMVTNLGTLAAVIIYFWRDVIHMFWGAIDLVRRRTSHNADLAFHVLIGTIPIIVVGLLLKLTHLDDHIRSATLVAINAIVFGLLLYAADTYGLLRRTIVDMNWKSSLIIGGAQALSLSPGTSRSGVTMTAARGLGFTRTEAARFSFLLSIPANGAASLLIIGNALESGETISGAVIITGILTFFIALGTITVLMRMIRTISFLPFVIYRLQFGS 771
            M++EQI+V+A++QGITEFLPISSSGHL+LVP L  WPDQG   D++ ++GTL A++IYFWRDV  +  GA++L R + + +  LA ++++ TIP +  GL LK   + D  RS T+VA N +++G+L+  AD  G   +TI +M  KS++IIG AQAL+L PGTSRSG+TMTAAR L FTR +AARFSFLL IPA   A +L +G AL SG+ I+   I   ILTFF  L  I  LM ++R ISFLPFV+YR+  G 
Sbjct:    1 MTIEQIIVIAVVQGITEFLPISSSGHLVLVPYLFHWPDQGQFVDVMVHVGTLFAILIYFWRDVWKLIVGALELFRGKVTQDGKLAIYIVLATIPAVAFGLFLKKFGVGDLERSVTIVAWNTVIYGILMLIADMLGRQEKTIENMTLKSAMIIGVAQALALIPGTSRSGITMTAARFLNFTRPDAARFSFLLGIPAIAGAGVLTVGEALASGDAITMDAIYCAILTFFAGLAAIAFLMALVRRISFLPFVLYRMVLGG 257          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15935.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A847ZYA2_9HYPH1.620e-12271.60Undecaprenyl-diphosphatase n=1 Tax=Phyllobacteriac... [more]
A0A537P6J1_9PROT5.830e-11165.50Undecaprenyl-diphosphatase n=1 Tax=Alphaproteobact... [more]
UPI0018C76E0B2.310e-10866.54undecaprenyl-diphosphate phosphatase n=1 Tax=Aestu... [more]
A0A2W2C8W3_9HYPH5.420e-9057.65Undecaprenyl-diphosphatase n=1 Tax=Aestuariivirga ... [more]
A0A7Y2BSZ9_9HYPH7.190e-9055.81Undecaprenyl-diphosphatase n=1 Tax=Hyphomicrobiale... [more]
A0A327JTY8_9HYPH4.400e-8956.52Undecaprenyl-diphosphatase n=1 Tax=Rhodobium orien... [more]
A0A5J4E0Y0_9BACT4.060e-8554.86Undecaprenyl-diphosphatase n=1 Tax=bacterium MnTg0... [more]
A0A849EB07_9HYPH2.130e-8454.86Undecaprenyl-diphosphatase n=1 Tax=Anderseniella s... [more]
A0A6G6WU18_9HYPH2.200e-8453.28Undecaprenyl-diphosphatase n=2 Tax=Hyphomicrobiale... [more]
A0A0A8JZL0_9HYPH7.620e-8353.31Undecaprenyl-diphosphatase n=4 Tax=Methyloceanibac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15935contigP-wetherbeei_contig15935:2..775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog744979.R2A130_2944
Preferred nameuppP
PFAMsBacA
Model size774
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00002
KEGG koko:K06153
KEGG ReactionR05627
KEGG Pathwayko00550,map00550
Hectar predicted targeting categorysignal peptide
GOsGO:0008150,GO:0042221,GO:0046677,GO:0050896
Exons1
Evalue1.39e-80
EggNOG OGsCOG1968@1|root,COG1968@2|Bacteria,1MX02@1224|Proteobacteria,2TSUR@28211|Alphaproteobacteria
EC3.6.1.27
DescriptionCatalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin
Cds size774
COG categoryV
BRITEko00000,ko00001,ko01000,ko01011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186072.0002706-CDS-P-wetherbeei_contig15935:1..7751683186072.0002706-CDS-P-wetherbeei_contig15935:1..775Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15935 2..775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15935.1.1prot_P-wetherbeei_contig15935.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15935 2..775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15935.1.1

>prot_P-wetherbeei_contig15935.1.1 ID=prot_P-wetherbeei_contig15935.1.1|Name=mRNA_P-wetherbeei_contig15935.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=258bp
MSLEQIVVLALIQGITEFLPISSSGHLILVPALTGWPDQGVVTDMVTNLG
TLAAVIIYFWRDVIHMFWGAIDLVRRRTSHNADLAFHVLIGTIPIIVVGL
LLKLTHLDDHIRSATLVAINAIVFGLLLYAADTYGLLRRTIVDMNWKSSL
IIGGAQALSLSPGTSRSGVTMTAARGLGFTRTEAARFSFLLSIPANGAAS
LLIIGNALESGETISGAVIITGILTFFIALGTITVLMRMIRTISFLPFVI
YRLQFGSV
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mRNA from alignment at P-wetherbeei_contig15935:2..775-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15935.1.1 ID=mRNA_P-wetherbeei_contig15935.1.1|Name=mRNA_P-wetherbeei_contig15935.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=774bp|location=Sequence derived from alignment at P-wetherbeei_contig15935:2..775- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCACTTGAGCAGATTGTTGTGCTTGCCCTCATTCAGGGGATCACCGA ATTTCTCCCCATTTCCTCCTCCGGCCATTTGATTCTGGTTCCCGCCCTCA CTGGCTGGCCCGATCAGGGGGTGGTGACCGACATGGTCACCAATCTGGGA ACCCTTGCCGCCGTGATCATCTATTTCTGGCGCGATGTCATCCACATGTT CTGGGGCGCCATCGATCTCGTCAGGCGCCGCACCTCGCACAATGCTGACC TCGCCTTTCATGTCCTCATCGGCACAATCCCGATTATTGTTGTGGGCCTG CTCTTGAAGCTCACCCATCTCGATGACCACATCCGCAGCGCCACGCTGGT GGCCATCAACGCCATTGTGTTCGGCCTCCTGCTCTATGCCGCTGATACCT ACGGCCTGCTGCGCCGCACGATTGTTGACATGAACTGGAAATCTTCGCTG ATCATCGGCGGGGCCCAGGCCCTGTCACTCAGCCCCGGCACCAGCCGCTC CGGCGTCACCATGACCGCTGCCCGCGGCCTTGGCTTTACCCGCACCGAAG CCGCGCGCTTTTCCTTCCTGCTTTCCATTCCGGCCAATGGCGCCGCCTCG CTGCTGATAATCGGCAACGCCCTGGAAAGCGGTGAAACCATTTCAGGCGC CGTCATCATCACCGGCATCCTCACGTTTTTCATAGCACTTGGCACCATCA CCGTGCTCATGCGCATGATCCGGACCATAAGCTTCCTGCCCTTTGTGATT TACCGGCTGCAGTTCGGTTCTGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15935:2..775-

>mRNA_P-wetherbeei_contig15935.1.1 ID=mRNA_P-wetherbeei_contig15935.1.1|Name=mRNA_P-wetherbeei_contig15935.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=774bp|location=Sequence derived from alignment at P-wetherbeei_contig15935:2..775- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCACTTGAGCAGATTGTTGTGCTTGCCCTCATTCAGGGGATCACCGA
ATTTCTCCCCATTTCCTCCTCCGGCCATTTGATTCTGGTTCCCGCCCTCA
CTGGCTGGCCCGATCAGGGGGTGGTGACCGACATGGTCACCAATCTGGGA
ACCCTTGCCGCCGTGATCATCTATTTCTGGCGCGATGTCATCCACATGTT
CTGGGGCGCCATCGATCTCGTCAGGCGCCGCACCTCGCACAATGCTGACC
TCGCCTTTCATGTCCTCATCGGCACAATCCCGATTATTGTTGTGGGCCTG
CTCTTGAAGCTCACCCATCTCGATGACCACATCCGCAGCGCCACGCTGGT
GGCCATCAACGCCATTGTGTTCGGCCTCCTGCTCTATGCCGCTGATACCT
ACGGCCTGCTGCGCCGCACGATTGTTGACATGAACTGGAAATCTTCGCTG
ATCATCGGCGGGGCCCAGGCCCTGTCACTCAGCCCCGGCACCAGCCGCTC
CGGCGTCACCATGACCGCTGCCCGCGGCCTTGGCTTTACCCGCACCGAAG
CCGCGCGCTTTTCCTTCCTGCTTTCCATTCCGGCCAATGGCGCCGCCTCG
CTGCTGATAATCGGCAACGCCCTGGAAAGCGGTGAAACCATTTCAGGCGC
CGTCATCATCACCGGCATCCTCACGTTTTTCATAGCACTTGGCACCATCA
CCGTGCTCATGCGCATGATCCGGACCATAAGCTTCCTGCCCTTTGTGATT
TACCGGCTGCAGTTCGGTTCTGTA
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