mRNA_P-wetherbeei_contig15884.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15884.2.1
Unique NamemRNA_P-wetherbeei_contig15884.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15884.2.1 vs. uniprot
Match: A0A835YUC5_9STRA (Exocyst complex component Sec3-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUC5_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.580e-10
Identity = 51/134 (38.06%), Postives = 76/134 (56.72%), Query Frame = 1 
Query:    7 LDVVGRPLELMQRDMAAIEGKNNKLDVRWRNYRRLHEHLDFLIASVALSPEKEDVLRAPERVLGPPGAILDPSEAVGAVVAASAALQDALLAASELEKEGEGAPPLTFLVEQQARLSALQEAFAAALTAHLRML 408
            LD +   L +MQRDMA IE +NN LDV+WRNYR L +HL  L+ ++ L  E+E VLR   ++       LD    + +V+ AS +L  A+ A   L    + A  L  + + +A L+ + + F A+LTA L+ L
Sbjct:  390 LDDIDDQLAVMQRDMAPIERQNNALDVQWRNYRALQDHLSVLVDAITLPFEEEAVLRDFSKM---DEYSLDKEIVLKSVINASESLLSAVDAGRRLGDAPQTAR-LRMVTDGRAHLTLVADQFIASLTATLKKL 519
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15884.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YUC5_9STRA1.580e-1038.06Exocyst complex component Sec3-domain-containing p... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15884contigP-wetherbeei_contig15884:1033..1440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3Y9
PFAMsSec3_C
Model size408
Max annot lvl2759|Eukaryota
KEGG koko:K18412,ko:K19983
Hectar predicted targeting categoryother localisation
GOsGO:0000145,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005938,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0008104,GO:0008150,GO:0008289,GO:0009987,GO:0016020,GO:0016192,GO:0017016,GO:0017048,GO:0017049,GO:0019899,GO:0031267,GO:0031503,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0034629,GO:0035091,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044448,GO:0044464,GO:0046903,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051601,GO:0051641,GO:0070727,GO:0071944,GO:0098876,GO:0099023,GO:0099568,GO:1901981,GO:1902936
Exons1
Evalue3.9e-21
EggNOG OGsKOG2148@1|root,KOG2148@2759|Eukaryota
Ec32 ortholog descriptionExocyst complex, component 1/SEC3
Ec32 orthologEc-19_000760.1
Descriptionexocyst localization
Cds size408
COG categoryF
BRITEko00000,ko03019,ko03036,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186070.1949086-CDS-P-wetherbeei_contig15884:1032..14401683186070.1949086-CDS-P-wetherbeei_contig15884:1032..1440Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15884 1033..1440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15884.2.1prot_P-wetherbeei_contig15884.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15884 1033..1440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15884.2.1

>prot_P-wetherbeei_contig15884.2.1 ID=prot_P-wetherbeei_contig15884.2.1|Name=mRNA_P-wetherbeei_contig15884.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
EWLDVVGRPLELMQRDMAAIEGKNNKLDVRWRNYRRLHEHLDFLIASVAL
SPEKEDVLRAPERVLGPPGAILDPSEAVGAVVAASAALQDALLAASELEK
EGEGAPPLTFLVEQQARLSALQEAFAAALTAHLRML
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mRNA from alignment at P-wetherbeei_contig15884:1033..1440+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15884.2.1 ID=mRNA_P-wetherbeei_contig15884.2.1|Name=mRNA_P-wetherbeei_contig15884.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig15884:1033..1440+ (Phaeothamnion wetherbeei SAG_119_79)
GAGTGGCTGGACGTGGTCGGACGGCCGCTGGAGCTCATGCAGCGCGACAT
GGCAGCCATCGAGGGCAAAAACAACAAGCTCGACGTGCGCTGGCGCAACT
ACCGCCGCCTTCACGAGCACCTGGATTTCCTGATCGCGTCGGTGGCGCTC
TCGCCCGAAAAAGAAGACGTCCTGCGGGCTCCAGAACGGGTCCTGGGTCC
GCCTGGAGCCATACTGGACCCATCCGAGGCGGTCGGGGCCGTTGTGGCGG
CGTCAGCTGCGCTGCAGGACGCGCTGCTGGCGGCATCGGAGCTCGAAAAG
GAAGGGGAAGGAGCGCCGCCGCTGACGTTTCTGGTGGAGCAGCAGGCGCG
ACTCAGTGCACTGCAGGAGGCGTTCGCGGCGGCGCTCACGGCGCACCTCC
GGATGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15884:1033..1440+

>mRNA_P-wetherbeei_contig15884.2.1 ID=mRNA_P-wetherbeei_contig15884.2.1|Name=mRNA_P-wetherbeei_contig15884.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig15884:1033..1440+ (Phaeothamnion wetherbeei SAG_119_79)
GAGTGGCTGGACGTGGTCGGACGGCCGCTGGAGCTCATGCAGCGCGACAT
GGCAGCCATCGAGGGCAAAAACAACAAGCTCGACGTGCGCTGGCGCAACT
ACCGCCGCCTTCACGAGCACCTGGATTTCCTGATCGCGTCGGTGGCGCTC
TCGCCCGAAAAAGAAGACGTCCTGCGGGCTCCAGAACGGGTCCTGGGTCC
GCCTGGAGCCATACTGGACCCATCCGAGGCGGTCGGGGCCGTTGTGGCGG
CGTCAGCTGCGCTGCAGGACGCGCTGCTGGCGGCATCGGAGCTCGAAAAG
GAAGGGGAAGGAGCGCCGCCGCTGACGTTTCTGGTGGAGCAGCAGGCGCG
ACTCAGTGCACTGCAGGAGGCGTTCGCGGCGGCGCTCACGGCGCACCTCC
GGATGCTG
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