mRNA_P-wetherbeei_contig15882.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15882.1.1
Unique NamemRNA_P-wetherbeei_contig15882.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15882.1.1 vs. uniprot
Match: D7FII4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FII4_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 7.480e-73
Identity = 114/132 (86.36%), Postives = 126/132 (95.45%), Query Frame = 1 
Query:    1 DKDGTGMIDYTEFCEVLQVDPSPQCEGIFQLFDYDRSGQLDVREFMIALTNFSGAGRDDKLKFAFMIFDEDGNGVITRQELVKILKANHLAQADAEVARKADTIMAQADKDGDGVVTFDEFVIVSKKFPNIL 396
            DKD TGMIDYTEFCE++QVDPSPQCEG+FQLFD DRSGQ+DVREFMI+LTNF+GA +DDKLKFAFMIFDEDGNGVIT+QEL +ILKANH+AQ++AEVARK DTIMAQADKDGDGVVTFDEFVIV KKFPNIL
Sbjct:  626 DKDSTGMIDYTEFCEIMQVDPSPQCEGLFQLFDGDRSGQIDVREFMISLTNFAGASKDDKLKFAFMIFDEDGNGVITKQELARILKANHMAQSEAEVARKTDTIMAQADKDGDGVVTFDEFVIVCKKFPNIL 757
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BLAST of mRNA_P-wetherbeei_contig15882.1.1 vs. uniprot
Match: A0A835ZJR9_9STRA (Putative calcineurin subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJR9_9STRA)

HSP 1 Score: 227 bits (578), Expect = 7.120e-70
Identity = 113/139 (81.29%), Postives = 126/139 (90.65%), Query Frame = 1 
Query:    1 DKDGTGMIDYTEFCEVLQVDPSPQCEGIFQLFDYDR--SGQLDVREFMIALTNFSGAG-----RDDKLKFAFMIFDEDGNGVITRQELVKILKANHLAQADAEVARKADTIMAQADKDGDGVVTFDEFVIVSKKFPNIL 396
            DKD TGMIDYTEFCEVLQVDPSPQCEG+FQLFDYDR  SGQ+DVREFMI+L ++SGA      R+DKLKFAFM+FDEDGNGVIT+ ELV+ILKANH+A +DAEVARKADTIM QADKDGDGVVTFDEFV+V+KKFPNIL
Sbjct:  362 DKDSTGMIDYTEFCEVLQVDPSPQCEGVFQLFDYDRIRSGQIDVREFMISLAHYSGATKASQHREDKLKFAFMVFDEDGNGVITKAELVRILKANHMATSDAEVARKADTIMNQADKDGDGVVTFDEFVLVAKKFPNIL 500
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BLAST of mRNA_P-wetherbeei_contig15882.1.1 vs. uniprot
Match: A0A7S3M8S8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8S8_9STRA)

HSP 1 Score: 223 bits (567), Expect = 7.280e-69
Identity = 102/135 (75.56%), Postives = 125/135 (92.59%), Query Frame = 1 
Query:    1 DKDGTGMIDYTEFCEVLQVDPSPQCEGIFQLFDYDRSGQLDVREFMIALTNFSGAGRDDKLKFAFMIFDEDGNGVITRQELVKILKANHLAQADAEVARKADTIMAQADKDGDGVVTFDEFVIVSKKFPNILMGA 405
            DKD +G++DYTEFCE+LQVDP+P CE +F+L+DYD++GQ+D REF+IA++N++GAG++DKLKFAFM FDEDGNGVIT+ EL+KILK+NH+A  DAEVARKADTIMAQADKDGDGV+TFDEFVIVSKKFPNIL  A
Sbjct:  308 DKDKSGVVDYTEFCEILQVDPAPLCETVFRLYDYDKTGQIDAREFLIAVSNYTGAGKEDKLKFAFMSFDEDGNGVITKAELLKILKSNHMASHDAEVARKADTIMAQADKDGDGVITFDEFVIVSKKFPNILFPA 442
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BLAST of mRNA_P-wetherbeei_contig15882.1.1 vs. uniprot
Match: A0A6H5JD51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD51_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 2.590e-68
Identity = 102/119 (85.71%), Postives = 114/119 (95.80%), Query Frame = 1 
Query:    1 DKDGTGMIDYTEFCEVLQVDPSPQCEGIFQLFDYDRSGQLDVREFMIALTNFSGAGRDDKLKFAFMIFDEDGNGVITRQELVKILKANHLAQADAEVARKADTIMAQADKDGDGVVTFD 357
            DKD TGMIDYTEFCE++QVDPSPQCEG+FQLFD DRSGQ+DVREFMI+LTNF+GA +DDKLKFAFMIFDEDGNGVIT+QEL +ILKANH+AQ++AEVARK DTIMAQADKDGDGVVTFD
Sbjct:  208 DKDSTGMIDYTEFCEIMQVDPSPQCEGLFQLFDGDRSGQIDVREFMISLTNFAGASKDDKLKFAFMIFDEDGNGVITKQELARILKANHMAQSEAEVARKTDTIMAQADKDGDGVVTFD 326
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BLAST of mRNA_P-wetherbeei_contig15882.1.1 vs. uniprot
Match: A0A662YEB8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YEB8_9STRA)

HSP 1 Score: 216 bits (549), Expect = 3.210e-65
Identity = 101/135 (74.81%), Postives = 122/135 (90.37%), Query Frame = 1 
Query:    1 DKDGTGMIDYTEFCEVLQVDPSPQCEGIFQLFDYDRSGQLDVREFMIALTNFSGAGRDDKLKFAFMIFDEDGNGVITRQELVKILKANHLAQADAEVARKADTIMAQADKDGDGVVTFDEFVIVSKKFPNILMGA 405
            DKDG+G +DY+EFCEV+QVDPSP  E +FQLFD +R+G++DVREFMIAL+NFSGA +++KLKFAF++FDEDGNGVITRQEL+KILKANH+A  D EVARKADTIM+Q DKDGDGV++FDEF +VSKKFPNIL  A
Sbjct:  399 DKDGSGQLDYSEFCEVMQVDPSPLSEKVFQLFDNERAGRVDVREFMIALSNFSGAEKEEKLKFAFLVFDEDGNGVITRQELLKILKANHMASNDGEVARKADTIMSQGDKDGDGVISFDEFSVVSKKFPNILFPA 533
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BLAST of mRNA_P-wetherbeei_contig15882.1.1 vs. uniprot
Match: A0A6A3NZV5_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NZV5_9STRA)

HSP 1 Score: 220 bits (561), Expect = 7.830e-65
Identity = 102/134 (76.12%), Postives = 124/134 (92.54%), Query Frame = 1 
Query:    4 KDGTGMIDYTEFCEVLQVDPSPQCEGIFQLFDYDRSGQLDVREFMIALTNFSGAGRDDKLKFAFMIFDEDGNGVITRQELVKILKANHLAQADAEVARKADTIMAQADKDGDGVVTFDEFVIVSKKFPNILMGA 405
            KDG+G IDY+EFCEVLQVDPSPQCE +FQLFD D++G++DVREFMIAL+NF+GA +++KLKFAF++FDEDGNGVITRQEL+KILKANH+A  ++EVARKADTIM+Q DKDGDGV++FDEF +VSKKFPNIL  A
Sbjct:  716 KDGSGQIDYSEFCEVLQVDPSPQCEKVFQLFDNDKTGRIDVREFMIALSNFTGAEKEEKLKFAFLVFDEDGNGVITRQELMKILKANHMASNESEVARKADTIMSQGDKDGDGVISFDEFSVVSKKFPNILFPA 849
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BLAST of mRNA_P-wetherbeei_contig15882.1.1 vs. uniprot
Match: F0Y8R0_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8R0_AURAN)

HSP 1 Score: 197 bits (500), Expect = 2.760e-62
Identity = 100/135 (74.07%), Postives = 110/135 (81.48%), Query Frame = 1 
Query:    1 DKDGTGMIDYTEFCEVLQVDPSPQCEGIFQLFDYDRSGQLDVREFMIALTNFSGAGRDDKLKFAFMIFDEDGNGVITRQELVKILKANHLAQADAEVARKADTIMAQADKDGDGVVTFDEFVIVSKKFPNILMGA 405
            DKD +GMIDYTEFCEVLQVDPSPQ E +                 MIAL+NF+GAG+DDKLKFAFMIFDEDGNGVIT+ EL +IL+ANH+AQAD+EVARKADTIM QADKDGDGVVTFDEFVIVSKKFPNIL  A
Sbjct:   26 DKDKSGMIDYTEFCEVLQVDPSPQGERLXXXXXXXXXXXXXXXXXMIALSNFTGAGKDDKLKFAFMIFDEDGNGVITKGELTRILRANHMAQADSEVARKADTIMQQADKDGDGVVTFDEFVIVSKKFPNILFPA 160
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BLAST of mRNA_P-wetherbeei_contig15882.1.1 vs. uniprot
Match: A0A0P1AVI5_PLAHL (Calcineurin subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AVI5_PLAHL)

HSP 1 Score: 213 bits (541), Expect = 2.850e-62
Identity = 100/135 (74.07%), Postives = 121/135 (89.63%), Query Frame = 1 
Query:    1 DKDGTGMIDYTEFCEVLQVDPSPQCEGIFQLFDYDRSGQLDVREFMIALTNFSGAGRDDKLKFAFMIFDEDGNGVITRQELVKILKANHLAQADAEVARKADTIMAQADKDGDGVVTFDEFVIVSKKFPNILMGA 405
            DK+G+  IDY+EFCEVLQVDPSPQ + +FQLFD D+  ++DVREFMIAL+NF+GA ++DKLKFAF++FDEDGNGVITRQEL+KILKANH+A ++ EVARKADTIM+Q DKDGDGV++FDEF IVSKKFPNIL  A
Sbjct:  652 DKNGSKQIDYSEFCEVLQVDPSPQSQRVFQLFDNDKVSRIDVREFMIALSNFTGADKEDKLKFAFLVFDEDGNGVITRQELIKILKANHMASSEGEVARKADTIMSQGDKDGDGVISFDEFSIVSKKFPNILFPA 786
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BLAST of mRNA_P-wetherbeei_contig15882.1.1 vs. uniprot
Match: W4GRQ0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GRQ0_9STRA)

HSP 1 Score: 212 bits (540), Expect = 2.880e-62
Identity = 97/135 (71.85%), Postives = 120/135 (88.89%), Query Frame = 1 
Query:    1 DKDGTGMIDYTEFCEVLQVDPSPQCEGIFQLFDYDRSGQLDVREFMIALTNFSGAGRDDKLKFAFMIFDEDGNGVITRQELVKILKANHLAQADAEVARKADTIMAQADKDGDGVVTFDEFVIVSKKFPNILMGA 405
            DKDG+G IDYTEFCE++ VDPSPQCE +F LFD D+ G++DVREF+IAL+NF GA +D+KLKFAFM+FD+DGNGV+++ EL+KILKANH+A  ++EVARKADTIM+Q DKDGDGV+TFDEF +VSKKFPNIL  A
Sbjct:  623 DKDGSGQIDYTEFCEIMLVDPSPQCEKLFGLFDNDKVGRIDVREFLIALSNFCGAEKDEKLKFAFMVFDDDGNGVLSKMELMKILKANHMASNESEVARKADTIMSQGDKDGDGVITFDEFAVVSKKFPNILFPA 757
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BLAST of mRNA_P-wetherbeei_contig15882.1.1 vs. uniprot
Match: A0A396ZZU5_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A396ZZU5_9STRA)

HSP 1 Score: 207 bits (526), Expect = 3.600e-62
Identity = 97/138 (70.29%), Postives = 120/138 (86.96%), Query Frame = 1 
Query:    1 DKDGTGMIDYTEFCEVLQVDPSPQCEGIFQLFDYDRSGQLDVRE---FMIALTNFSGAGRDDKLKFAFMIFDEDGNGVITRQELVKILKANHLAQADAEVARKADTIMAQADKDGDGVVTFDEFVIVSKKFPNILMGA 405
            DKDG+G IDYTEFCE++ VDPSPQCE +F LFD D+ G++DVRE   F+IAL+NF GA +D+KLKFAFM+FD+DGNGV+++ EL+KILKANH+A  ++EVARKADTIM+Q DKDGDGV+TFDEF +VSKKFPNIL  A
Sbjct:  355 DKDGSGQIDYTEFCEIMLVDPSPQCEKLFGLFDNDKVGRIDVREVHKFLIALSNFCGAEKDEKLKFAFMVFDDDGNGVLSKMELMKILKANHMASNESEVARKADTIMSQGDKDGDGVITFDEFAVVSKKFPNILFPA 492
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15882.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FII4_ECTSI7.480e-7386.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZJR9_9STRA7.120e-7081.29Putative calcineurin subunit B n=1 Tax=Tribonema m... [more]
A0A7S3M8S8_9STRA7.280e-6975.56Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6H5JD51_9PHAE2.590e-6885.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A662YEB8_9STRA3.210e-6574.81Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A6A3NZV5_9STRA7.830e-6576.12Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
F0Y8R0_AURAN2.760e-6274.07Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A0P1AVI5_PLAHL2.850e-6274.07Calcineurin subunit n=1 Tax=Plasmopara halstedii T... [more]
W4GRQ0_9STRA2.880e-6271.85Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A396ZZU5_9STRA3.600e-6270.29Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15882contigP-wetherbeei_contig15882:516..1524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FII4
PFAMsC2,EF-hand_1,EF-hand_5,EF-hand_6,EF-hand_7,TIR,TIR_2
Model size405
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00037
KEGG koko:K02183,ko:K06268,ko:K08193,ko:K13510
KEGG TC2.A.1.14
KEGG ReactionR01318,R03437,R03438,R09036
KEGG Pathwayko00564,ko00565,ko01100,ko04010,ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04310,ko04360,ko04370,ko04371,ko04380,ko04626,ko04650,ko04658,ko04659,ko04660,ko04662,ko04713,ko04720,ko04722,ko04724,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05014,ko05031,ko05034,ko05133,ko05152,ko05166,ko05167,ko05200,ko05214,ko05418,map00564,map00565,map01100,map04010,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04310,map04360,map04370,map04371,map04380,map04626,map04650,map04658,map04659,map04660,map04662,map04713,map04720,map04722,map04724,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05014,map05031,map05034,map05133,map05152,map05166,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.12e-69
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota,KOG0034@2759|Eukaryota
EC2.3.1.23,2.3.1.67
Descriptioncalcium ion binding
Cds size387
COG categoryDTZ
BRITEko00000,ko00001,ko01000,ko01004,ko01009,ko02000,ko03036,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186070.1213927-CDS-P-wetherbeei_contig15882:515..6441683186070.1213927-CDS-P-wetherbeei_contig15882:515..644Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15882 516..644 -
1683186070.1413033-CDS-P-wetherbeei_contig15882:1248..15061683186070.1413033-CDS-P-wetherbeei_contig15882:1248..1506Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15882 1249..1506 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186070.1525095-UTR-P-wetherbeei_contig15882:1506..15241683186070.1525095-UTR-P-wetherbeei_contig15882:1506..1524Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15882 1507..1524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15882.1.1prot_P-wetherbeei_contig15882.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15882 516..1506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15882.1.1

>prot_P-wetherbeei_contig15882.1.1 ID=prot_P-wetherbeei_contig15882.1.1|Name=mRNA_P-wetherbeei_contig15882.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
MIDYTEFCEVLQVDPSPQCEGIFQLFDYDRSGQLDVREFMIALTNFSGAG
RDDKLKFAFMIFDEDGNGVITRQELVKILKANHLAQADAEVARKADTIMA
QADKDGDGVVTFDEFVIVSKKFPNILMGA
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mRNA from alignment at P-wetherbeei_contig15882:516..1524-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15882.1.1 ID=mRNA_P-wetherbeei_contig15882.1.1|Name=mRNA_P-wetherbeei_contig15882.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1009bp|location=Sequence derived from alignment at P-wetherbeei_contig15882:516..1524- (Phaeothamnion wetherbeei SAG_119_79)
GACAAGGACGGTACGGGCATGATCGACTACACCGAGTTCTGCGAGGTGCT
GCAGGTGGACCCGTCACCGCAGTGCGAGGGCATTTTCCAGCTCTTCGACT
ACGACCGCAGTGGCCAACTCGACGTGCGTGAGTTCATGATTGCGCTGACC
AACTTTTCCGGGGCGGGCCGCGACGACAAACTCAAGTTCGCCTTCATGAT
CTTCGACGAAGACGGCAACGGCGTCATCACGCGGCAGGAACTCGTCAAAA
TCCTCAAGGCCAACCACCTCGCGCAGGTGTGCGAACAGCGGTTTTGCAGC
GGTTCGTGGCGGTTCGCGGCAGTTCGCGGTCTAGCGATCTTGTTTTCCGG
TTTCTGTTTCTGTTCCTGTTTCTCTTTCTCCTTCTCTATTGATTGTGCAA
TTTCGGGTTTTCTGTGTCGTGGATGCTGAAATTTTGAGGGCATTTTGATG
GCGGTTTGGGAGGCGTTGAGGTTGTGCTCATGCCGGTCTGACAGGTGTTA
GAGTTGTTGTTTATCATTGCTGCTCGGGTTTTTGTTTTGTATTGTGATGG
CACTGACGGTGGCAAATGTGATGGATCAGTGGGAAAACCAAGTTTAAACG
GTTGGTTTCTTCCATACTTGGAGCGACAAAATGAGAATGCTGCTGCGCCG
CTCATTCCAGCGGCTGCCTTTTAGTCTAATTTGTAGACTTAACTGGAAAA
CGACTTATGAGGAAACCCCAATCTCTGCCTGGGGCCGCACGCAATCGCCG
AACTGTCGCTAATTTCGCTTTCGGGGTCCACGCACTGCTTCAATCCATTC
CCTGCCGGCCCCTCTCGCTCTTTTCCGCTCCGCCCCGCCCCGCTCCTGGT
TCTACTTCTGACTCCGCTCCGATGTGTTAGGCTGACGCGGAGGTGGCCCG
CAAGGCGGACACGATCATGGCGCAGGCGGACAAGGACGGCGATGGTGTCG
TCACCTTCGACGAGTTCGTCATCGTCTCCAAAAAGTTCCCCAACATCCTC
ATGGGGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15882:516..1524-

>mRNA_P-wetherbeei_contig15882.1.1 ID=mRNA_P-wetherbeei_contig15882.1.1|Name=mRNA_P-wetherbeei_contig15882.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig15882:516..1524- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGACTACACCGAGTTCTGCGAGGTGCTGCAGGTGGACCCGTCACC
GCAGTGCGAGGGCATTTTCCAGCTCTTCGACTACGACCGCAGTGGCCAAC
TCGACGTGCGTGAGTTCATGATTGCGCTGACCAACTTTTCCGGGGCGGGC
CGCGACGACAAACTCAAGTTCGCCTTCATGATCTTCGACGAAGACGGCAA
CGGCGTCATCACGCGGCAGGAACTCGTCAAAATCCTCAAGGCCAACCACC
TCGCGCAGGCTGACGCGGAGGTGGCCCGCAAGGCGGACACGATCATGGCG
CAGGCGGACAAGGACGGCGATGGTGTCGTCACCTTCGACGAGTTCGTCAT
CGTCTCCAAAAAGTTCCCCAACATCCTCATGGGGGCG
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