mRNA_P-wetherbeei_contig15829.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15829.1.1
Unique NamemRNA_P-wetherbeei_contig15829.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15829.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15829contigP-wetherbeei_contig15829:45..1574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1530
Hectar predicted targeting categoryother localisation
Exons1
Cds size1017
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186068.642694-UTR-P-wetherbeei_contig15829:44..4791683186068.642694-UTR-P-wetherbeei_contig15829:44..479Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15829 45..479 +
1683186068.6717257-UTR-P-wetherbeei_contig15829:1496..15741683186068.6717257-UTR-P-wetherbeei_contig15829:1496..1574Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15829 1497..1574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186068.6607447-CDS-P-wetherbeei_contig15829:479..14961683186068.6607447-CDS-P-wetherbeei_contig15829:479..1496Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15829 480..1496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15829.1.1prot_P-wetherbeei_contig15829.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15829 480..1496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15829.1.1

>prot_P-wetherbeei_contig15829.1.1 ID=prot_P-wetherbeei_contig15829.1.1|Name=mRNA_P-wetherbeei_contig15829.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=339bp
MPTEERLLESKRQMIQALLTSSTGNSKRRKASPPPTTATATATSTTAAAV
VASAAAMAAGAAGTGAAAAGAAATEPMVELTPVGTRGGARAASLLREASS
PSPRGPMALGELFLTPPAAPPRALLGPYAPIERYHDAFSPITPPTELSMA
ATTPAVAKVEFCGGSGSSGGDGDDRQSSASFSGRGNGASPPFVSPYGRNF
PFSPFSPGLTTEAAAGGGSEQSDGGSVAAAAHSSLAALERALLAELSSGS
EHDGSGGSGGTDDGAPFNGSGDHEHDGSYGSYGHSGGGGGSGDGASGGGG
GGGFGGGAGESAAESPRTLSTLFRCDNELLRLVGKGCA*
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mRNA from alignment at P-wetherbeei_contig15829:45..1574+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15829.1.1 ID=mRNA_P-wetherbeei_contig15829.1.1|Name=mRNA_P-wetherbeei_contig15829.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1530bp|location=Sequence derived from alignment at P-wetherbeei_contig15829:45..1574+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGGACCCGCGCGACGCCCATCGCAGGCCGCCGAGCCCGGTGCCGGCGG
CGGCGGCCGCGGCGGCCGGTCTTCCAGCATCGGAGCGAGTCTTGGCCGCA
CCGGCACCCGTGGCCGCATCAACAAGACCAGCAGCTACGATAGTGGCTAC
GGGAGCAGCAGCGACGACGACGGCTCTCGCGGTGACGCCTACAGCAGTAG
CGGCAGCAGCAGCAGTGGCGGCGGCAGCATCTACCGAGGCCGCCGGACCG
GCGGCGGCCGCCCCAGCCTGGCGCAGAGCACTGCTGGCACCCGCCAGCCC
AGCGGCGGCAGCTATGCCGGCGTTGGCGGCAGCAAGTCGCCGGGGAAATG
GAACCCGCCGTTTCAGGCGCGAGGCGCGCTGGTTCCGGTTCATGGTCGCC
GTCGTCCCGCCGACTGTGGCCCTGCTGTTGCCACTATGCCGACGGAGGAA
CGGTTGCTCGAATCGAAGCGGCAGATGATCCAGGCCCTGCTGACATCCTC
CACAGGGAACTCTAAGCGCCGCAAGGCGTCTCCGCCGCCTACCACCGCGA
CGGCGACGGCGACATCGACAACGGCTGCGGCGGTGGTGGCATCGGCTGCG
GCGATGGCAGCCGGGGCGGCGGGGACAGGCGCGGCCGCGGCGGGGGCGGC
GGCAACGGAACCGATGGTAGAGTTGACTCCAGTTGGAACACGAGGCGGTG
CGAGAGCGGCATCTCTGCTGCGGGAGGCGTCGTCGCCCTCACCACGTGGA
CCAATGGCACTCGGAGAGCTGTTCTTGACCCCGCCGGCGGCGCCACCGCG
CGCCCTGCTGGGTCCGTACGCGCCGATCGAGCGCTATCATGACGCGTTCA
GCCCGATCACGCCGCCTACGGAACTGAGTATGGCCGCGACAACGCCGGCT
GTCGCGAAAGTGGAGTTCTGCGGCGGTAGTGGCAGCAGCGGCGGCGACGG
CGACGATCGACAGAGCTCCGCCAGTTTCAGCGGCCGCGGCAACGGCGCCT
CTCCGCCCTTCGTCAGTCCGTACGGGCGGAACTTCCCTTTCAGCCCGTTT
AGTCCCGGTTTGACGACGGAGGCAGCGGCAGGCGGTGGAAGCGAGCAGTC
CGACGGCGGCAGCGTCGCGGCAGCCGCACACAGCTCGCTGGCGGCACTGG
AACGGGCGCTGCTTGCGGAGCTGAGCAGCGGGTCGGAACATGACGGCAGT
GGCGGCAGCGGCGGCACTGATGACGGTGCTCCTTTCAACGGCAGCGGCGA
CCATGAGCACGACGGTAGCTACGGCAGCTATGGCCACAGCGGCGGCGGTG
GCGGGTCTGGCGACGGCGCCAGCGGCGGCGGCGGTGGCGGAGGCTTCGGC
GGTGGTGCTGGGGAAAGTGCTGCCGAGTCACCACGGACGCTGTCGACGCT
CTTCCGCTGTGACAACGAGCTGCTGCGGCTCGTCGGAAAGGGGTGCGCCT
GAACGGCGAGACCCCCCTGCAAACGGCGCCGCCGTGAGGCGCGCCGCTGA
TTGCGGTGGGGCCAGCACTGGGTGATGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15829:45..1574+

>mRNA_P-wetherbeei_contig15829.1.1 ID=mRNA_P-wetherbeei_contig15829.1.1|Name=mRNA_P-wetherbeei_contig15829.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1017bp|location=Sequence derived from alignment at P-wetherbeei_contig15829:45..1574+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGACGGAGGAACGGTTGCTCGAATCGAAGCGGCAGATGATCCAGGC
CCTGCTGACATCCTCCACAGGGAACTCTAAGCGCCGCAAGGCGTCTCCGC
CGCCTACCACCGCGACGGCGACGGCGACATCGACAACGGCTGCGGCGGTG
GTGGCATCGGCTGCGGCGATGGCAGCCGGGGCGGCGGGGACAGGCGCGGC
CGCGGCGGGGGCGGCGGCAACGGAACCGATGGTAGAGTTGACTCCAGTTG
GAACACGAGGCGGTGCGAGAGCGGCATCTCTGCTGCGGGAGGCGTCGTCG
CCCTCACCACGTGGACCAATGGCACTCGGAGAGCTGTTCTTGACCCCGCC
GGCGGCGCCACCGCGCGCCCTGCTGGGTCCGTACGCGCCGATCGAGCGCT
ATCATGACGCGTTCAGCCCGATCACGCCGCCTACGGAACTGAGTATGGCC
GCGACAACGCCGGCTGTCGCGAAAGTGGAGTTCTGCGGCGGTAGTGGCAG
CAGCGGCGGCGACGGCGACGATCGACAGAGCTCCGCCAGTTTCAGCGGCC
GCGGCAACGGCGCCTCTCCGCCCTTCGTCAGTCCGTACGGGCGGAACTTC
CCTTTCAGCCCGTTTAGTCCCGGTTTGACGACGGAGGCAGCGGCAGGCGG
TGGAAGCGAGCAGTCCGACGGCGGCAGCGTCGCGGCAGCCGCACACAGCT
CGCTGGCGGCACTGGAACGGGCGCTGCTTGCGGAGCTGAGCAGCGGGTCG
GAACATGACGGCAGTGGCGGCAGCGGCGGCACTGATGACGGTGCTCCTTT
CAACGGCAGCGGCGACCATGAGCACGACGGTAGCTACGGCAGCTATGGCC
ACAGCGGCGGCGGTGGCGGGTCTGGCGACGGCGCCAGCGGCGGCGGCGGT
GGCGGAGGCTTCGGCGGTGGTGCTGGGGAAAGTGCTGCCGAGTCACCACG
GACGCTGTCGACGCTCTTCCGCTGTGACAACGAGCTGCTGCGGCTCGTCG
GAAAGGGGTGCGCCTGA
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