mRNA_P-wetherbeei_contig15822.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15822.1.1
Unique NamemRNA_P-wetherbeei_contig15822.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15822.1.1 vs. uniprot
Match: A0A836CBN8_9STRA (Riboflavin biosynthesis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN8_9STRA)

HSP 1 Score: 155 bits (392), Expect = 3.820e-45
Identity = 79/108 (73.15%), Postives = 93/108 (86.11%), Query Frame = 1
Query:   10 AARPEVTLKIALDENGAVDDRSKESQRFTSEESLDAAVHRLRRDCQAVIVGVETIVRDNPSLTVRRVPLLVGQEQPVRVVLDRTLRIPDASVCKLLSDGNPTLVYFVN 333
            ++RP VTLK+A+D+ GAVDDRS+  +RFTS ESLDA VHRLRRD  AV+VGVET+VRDNPSLTVRRVPLL GQ+QP+RVVLDR LRIP+A  C+LLSDG+PT V F N
Sbjct:    9 SSRPLVTLKLAVDQQGAVDDRSEAPKRFTSSESLDA-VHRLRRDAGAVVVGVETVVRDNPSLTVRRVPLLDGQQQPLRVVLDRNLRIPEADQCQLLSDGHPTAVLFTN 115          
BLAST of mRNA_P-wetherbeei_contig15822.1.1 vs. uniprot
Match: I2CPJ6_NANGC (Riboflavin biosynthesis protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPJ6_NANGC)

HSP 1 Score: 125 bits (315), Expect = 1.870e-33
Identity = 68/105 (64.76%), Postives = 84/105 (80.00%), Query Frame = 1
Query:   16 RPEVTLKIALDENGAVDDRSKESQRFTSEESLDAAVHRLRRDCQAVIVGVETIVRDNPSLTVRRVPLLVGQEQPVRVVLDRTLRIPDASVCKLLSDGNPTLVYFV 330
            RP VT+K+A+D  GAVDD + +  RFT E SLDA VHRLRR+ +AV+VGVET+VRD+PSLTVRRVPL   Q QP+RVVLDR+LRIP +S   LL+D + TLVY+V
Sbjct:   20 RPRVTVKLAVDRKGAVDDATLKPGRFTCEASLDA-VHRLRRESEAVVVGVETVVRDDPSLTVRRVPLRPDQRQPIRVVLDRSLRIPYSST--LLNDRHRTLVYYV 121          
BLAST of mRNA_P-wetherbeei_contig15822.1.1 vs. uniprot
Match: A0A6U6BWZ9_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A6U6BWZ9_GUITH)

HSP 1 Score: 121 bits (304), Expect = 2.740e-31
Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 1
Query:   19 PEVTLKIALDENGAVDDRSKESQRFTSEESLDAAVHRLRRDCQAVIVGVETIVRDNPSLTVRRVPLLVGQEQPVRVVLDRTLRIPDASVCKLLSDGNPTLVYFVNDRE 342
            P VTLKIALDENGAVDD    S+RFTSE+SLDA VHRLRR   AV+VG+ T+VRD+PSLTVRRVPLL G+EQP+R V+D +L+I   + CK++ DG  T+++  +  E
Sbjct:   78 PIVTLKIALDENGAVDDLGITSKRFTSEQSLDA-VHRLRRCSDAVLVGIGTVVRDDPSLTVRRVPLLEGREQPLRAVIDPSLKIE--AHCKVMRDGYKTVIFHSDSDE 182          
BLAST of mRNA_P-wetherbeei_contig15822.1.1 vs. uniprot
Match: D7FMH2_ECTSI (RibD_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH2_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.960e-30
Identity = 67/108 (62.04%), Postives = 83/108 (76.85%), Query Frame = 1
Query:   19 PEVTLKIALDENGAVDDRSKESQRFTSEESLDAAVHRLRRDCQAVIVGVETIVRDNPSLTVRRVPLLVGQ-EQPVRVVLDRTLRIPDASVCK----LLSDGNPTLVYF 327
            P VTLK+A+D NGAVDD S+  +RFTS  SLDA VHR+RRDC+AV+VGV T+VRD+PSLTVRRVPL  GQ  QP RVVLDRTLR+  A   +    +L DG+ +LV++
Sbjct:  147 PSVTLKLAMDRNGAVDDMSEGPKRFTSPASLDA-VHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLNGGQTRQPTRVVLDRTLRLTGAQAGQNPRAILRDGHSSLVFY 253          
BLAST of mRNA_P-wetherbeei_contig15822.1.1 vs. uniprot
Match: A0A7S1GRL0_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GRL0_HEMAN)

HSP 1 Score: 115 bits (288), Expect = 2.920e-30
Identity = 66/106 (62.26%), Postives = 79/106 (74.53%), Query Frame = 1
Query:    4 SPAARPEVTLKIALDENGAVDDRSKESQRFTSEESLDAAVHRLRRDCQAVIVGVETIVRDNPSLTVRRVPLLVGQEQPVRVVLDRTLRIPDASVCKLLSDGNPTLV 321
            S ++RP VTLKIA+D N AVDD +  ++RFTS  SLDA VHRLRRD  AV+VGV T+ RD+P LTVRRVPL  GQEQP+RVVLD +LR P  S   L +DG  TL+
Sbjct:   65 SASSRPTVTLKIAIDTNWAVDDAALTAKRFTSPASLDA-VHRLRRDSSAVLVGVGTVCRDDPGLTVRRVPLREGQEQPLRVVLDPSLRTPPQSA--LATDGLKTLL 167          
BLAST of mRNA_P-wetherbeei_contig15822.1.1 vs. uniprot
Match: A0A832V5V4_9ARCH (Bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD n=2 Tax=Archaea TaxID=2157 RepID=A0A832V5V4_9ARCH)

HSP 1 Score: 120 bits (300), Expect = 3.500e-30
Identity = 65/108 (60.19%), Postives = 87/108 (80.56%), Query Frame = 1
Query:   19 PEVTLKIALDENGAVDDRSKESQRFTSEESLDAAVHRLRRDCQAVIVGVETIVRDNPSLTVRRVPLLVGQEQPVRVVLDRTLRIPDASVCKLLSDGNPTLVYFVNDRE 342
            P VTLK+A+D+NGAVDDR+++S RFTS+ESLDA VHRLR+D  A+IVGV T++RDNPSLTVRR+ L  G+ QP+RVVLDR L+ P  S+  +++D + TL++ V  RE
Sbjct:  156 PLVTLKVAIDKNGAVDDRAEDSFRFTSQESLDA-VHRLRKDVDAIIVGVGTVLRDNPSLTVRRIELGEGK-QPLRVVLDRELKTPIDSI--IVNDDHDTLIFHVEGRE 259          
BLAST of mRNA_P-wetherbeei_contig15822.1.1 vs. uniprot
Match: A0A842P3K4_9EURY (Bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A842P3K4_9EURY)

HSP 1 Score: 119 bits (297), Expect = 7.940e-30
Identity = 65/108 (60.19%), Postives = 86/108 (79.63%), Query Frame = 1
Query:   19 PEVTLKIALDENGAVDDRSKESQRFTSEESLDAAVHRLRRDCQAVIVGVETIVRDNPSLTVRRVPLLVGQEQPVRVVLDRTLRIPDASVCKLLSDGNPTLVYFVNDRE 342
            P VTLKIA+D NGAVDDR+++S RFTSEESL+A VHRLR+D  A+IVG+ TI+RDNPSLTVRR+ + +G+ QP+RV+LDR L+ P  S   +++DG+ TL+  V  RE
Sbjct:  144 PLVTLKIAVDSNGAVDDRAEDSFRFTSEESLNA-VHRLRKDVDAIIVGIGTIIRDNPSLTVRRIEMGLGK-QPLRVILDRELKTPLDST--IVNDGHNTLILHVEGRE 247          
BLAST of mRNA_P-wetherbeei_contig15822.1.1 vs. uniprot
Match: A0A7C7HSY4_9ARCH (Bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD n=4 Tax=Archaea TaxID=2157 RepID=A0A7C7HSY4_9ARCH)

HSP 1 Score: 117 bits (292), Expect = 4.970e-29
Identity = 67/103 (65.05%), Postives = 82/103 (79.61%), Query Frame = 1
Query:   16 RPEVTLKIALDENGAVDDRSKESQRFTSEESLDAAVHRLRRDCQAVIVGVETIVRDNPSLTVRRVPLLVGQEQPVRVVLDRTLRIP-DASVCKLLSDGNPTLV 321
            RP VTLKIA D NGAVDD +  S+RFTS +SLDA VHRLRRDC A+I+GVETIVRDNPSLTVRR+ L  G+ QPVR++LDR LR P D++V   L+D + T++
Sbjct:  153 RPLVTLKIATDRNGAVDDLALASKRFTSPDSLDA-VHRLRRDCDAIIIGVETIVRDNPSLTVRRIELGHGR-QPVRIILDRALRTPLDSTV---LADEHQTMI 250          
BLAST of mRNA_P-wetherbeei_contig15822.1.1 vs. uniprot
Match: A0A2E5X8P4_9EURY (Riboflavin biosynthesis protein RibD n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E5X8P4_9EURY)

HSP 1 Score: 116 bits (290), Expect = 7.850e-29
Identity = 64/110 (58.18%), Postives = 82/110 (74.55%), Query Frame = 1
Query:   16 RPEVTLKIALDENGAVDDRSKESQRFTSEESLDAAVHRLRRDCQAVIVGVETIVRDNPSLTVRRVPLLVGQEQPVRVVLDRTLRIPDASVCKLLSDGNPTLVYFVNDRER 345
            RP VTLK A+D NG VD   ++  RFTSEESLDAA HRLRR C A++VGV TI+RDNP+L +RRVPL  G+ QP+R+VLDR LRIPD ++  +L+DG  T++  +   ER
Sbjct:  155 RPLVTLKAAMDLNGVVD--GEKPGRFTSEESLDAA-HRLRRHCDAILVGVNTIIRDNPTLNIRRVPLEKGK-QPMRIVLDRNLRIPDDAI--VLTDGGETILVHIQPEER 258          
BLAST of mRNA_P-wetherbeei_contig15822.1.1 vs. uniprot
Match: A0A2E0K0L6_9EURY (Riboflavin biosynthesis protein RibD n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E0K0L6_9EURY)

HSP 1 Score: 113 bits (282), Expect = 1.150e-27
Identity = 65/110 (59.09%), Postives = 79/110 (71.82%), Query Frame = 1
Query:   16 RPEVTLKIALDENGAVDDRSKESQRFTSEESLDAAVHRLRRDCQAVIVGVETIVRDNPSLTVRRVPLLVGQEQPVRVVLDRTLRIPDASVCKLLSDGNPTLVYFVNDRER 345
            RP VTLK A+D NG VD  S    RFTSEESLDA VHRLRR C A++VGV TI+RDNPSL VRRVP+  G+ QP+R+VLDR LRIPD    ++L+DG  T++      +R
Sbjct:  155 RPLVTLKAAMDANGVVDGES--PGRFTSEESLDA-VHRLRRHCDAILVGVNTIIRDNPSLNVRRVPIGEGK-QPLRIVLDRNLRIPDE--VEVLTDGGETILVHTQLTDR 258          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15822.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CBN8_9STRA3.820e-4573.15Riboflavin biosynthesis protein n=1 Tax=Tribonema ... [more]
I2CPJ6_NANGC1.870e-3364.76Riboflavin biosynthesis protein n=1 Tax=Nannochlor... [more]
A0A6U6BWZ9_GUITH2.740e-3161.11Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
D7FMH2_ECTSI1.960e-3062.04RibD_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S1GRL0_HEMAN2.920e-3062.26Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A832V5V4_9ARCH3.500e-3060.19Bifunctional diaminohydroxyphosphoribosylaminopyri... [more]
A0A842P3K4_9EURY7.940e-3060.19Bifunctional diaminohydroxyphosphoribosylaminopyri... [more]
A0A7C7HSY4_9ARCH4.970e-2965.05Bifunctional diaminohydroxyphosphoribosylaminopyri... [more]
A0A2E5X8P4_9EURY7.850e-2958.18Riboflavin biosynthesis protein RibD n=1 Tax=Eurya... [more]
A0A2E0K0L6_9EURY1.150e-2759.09Riboflavin biosynthesis protein RibD n=1 Tax=Eurya... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15822contigP-wetherbeei_contig15822:80..1139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FMH2
PFAMsRibD_C
Model size348
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.22e-31
EggNOG OGs2CYVK@1|root,2S6R1@2759|Eukaryota
Ec32 ortholog descriptionBacterial bifunctional deaminase-reductase, C-terminal
Ec32 orthologEc-23_000290.1
DescriptionRibD C-terminal domain
Cds size348
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186068.5813282-CDS-P-wetherbeei_contig15822:79..1971683186068.5813282-CDS-P-wetherbeei_contig15822:79..197Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15822 80..197 +
1683186068.5931003-CDS-P-wetherbeei_contig15822:539..6191683186068.5931003-CDS-P-wetherbeei_contig15822:539..619Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15822 540..619 +
1683186068.6112654-CDS-P-wetherbeei_contig15822:989..11391683186068.6112654-CDS-P-wetherbeei_contig15822:989..1139Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15822 990..1139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15822.1.1prot_P-wetherbeei_contig15822.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15822 80..1139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15822.1.1

>prot_P-wetherbeei_contig15822.1.1 ID=prot_P-wetherbeei_contig15822.1.1|Name=mRNA_P-wetherbeei_contig15822.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
MSPAARPEVTLKIALDENGAVDDRSKESQRFTSEESLDAAVHRLRRDCQA
VIVGVETIVRDNPSLTVRRVPLLVGQEQPVRVVLDRTLRIPDASVCKLLS
DGNPTLVYFVNDRER*
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mRNA from alignment at P-wetherbeei_contig15822:80..1139+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15822.1.1 ID=mRNA_P-wetherbeei_contig15822.1.1|Name=mRNA_P-wetherbeei_contig15822.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1060bp|location=Sequence derived from alignment at P-wetherbeei_contig15822:80..1139+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTCCGGCAGCTCGTCCTGAGGTTACCTTGAAGATTGCGCTGGACGA GAACGGCGCAGTGGACGACCGATCAAAAGAGTCTCAGCGTTTCACTTCGG AGGAATCGCTGGACGCTGGTGAGTTTTTGCCGACGTTTCGAGGTTCCGGG TATGACAAAAGCTATTCATATTTCGCCAGGCTGTGCCATATGACATGTTT CGTCAAAGAAAGCAGGAGAGGGCCGTGTTTTGCCGTGGCGGACATCGTTT TATCCCAAGTTTCTGCTTTTTCTCCTTTGTTACCTGACCCCCTCAGTTAG ACCAACATTCCAAAAGCTGAGCATCGCATGATCCATACCCTCTTCCTCCT CTTCGTGTGCTTGTGTTACACCGCACGCCGCTTGTTTTCGTCCAATCGGC GGCATGCCTGGGCCGGCTGTGAGTATCGATTGCCTTGATTGTTTGCTGGT CATTGCTGAGCAGTGCACAGGTTGCGGCGGGATTGCCAAGCAGTCATTGT GGGCGTGGAGACGATCGTACGGGATAACCCGTCATTGACGGTGCGTTTGT TGCCTTGGGCAATTTTGTTAAGGAACCAACTTCGTAGAGAATAAACAAGC AAGGCTGTTCTGCTTTGCGTACAGATTGCTTTTCTCGCTTCTATTGCCGA CCCGCTGGCCCGCTTCTGATCGTTCTATCGGGTAACAGCATCTTTTTACC GGTCTCCTGCCTTCCTGCAACTTCTCGTCATCCGCAAGTCTTCGCCGGCG ATCTCGCGATGAAGCGCTATCCCAATGCCGCATGTTCTTCTCATATCTTC TTGCTGATAAGCAGCCTGGCAGTGCGTGGCCCTCTCCTTTCCCGTTTAAG GATTCATTCGGTTCCCTCTTCTTCCGCCCCTTTCTCGTTCCCCTTTTCTC ACCTCTGCAGGTCCGGCGGGTGCCGCTGCTGGTGGGGCAGGAGCAGCCGG TGCGGGTAGTGCTCGACCGCACGCTGCGCATCCCCGACGCTTCCGTCTGC AAGCTGCTTTCCGACGGAAACCCCACCCTCGTGTACTTTGTCAACGACCG GGAGAGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15822:80..1139+

>mRNA_P-wetherbeei_contig15822.1.1 ID=mRNA_P-wetherbeei_contig15822.1.1|Name=mRNA_P-wetherbeei_contig15822.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig15822:80..1139+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTCCGGCAGCTCGTCCTGAGGTTACCTTGAAGATTGCGCTGGACGA
GAACGGCGCAGTGGACGACCGATCAAAAGAGTCTCAGCGTTTCACTTCGG
AGGAATCGCTGGACGCTGCAGTGCACAGGTTGCGGCGGGATTGCCAAGCA
GTCATTGTGGGCGTGGAGACGATCGTACGGGATAACCCGTCATTGACGGT
CCGGCGGGTGCCGCTGCTGGTGGGGCAGGAGCAGCCGGTGCGGGTAGTGC
TCGACCGCACGCTGCGCATCCCCGACGCTTCCGTCTGCAAGCTGCTTTCC
GACGGAAACCCCACCCTCGTGTACTTTGTCAACGACCGGGAGAGGTGA
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