mRNA_P-wetherbeei_contig1582.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1582.1.1
Unique NamemRNA_P-wetherbeei_contig1582.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1582.1.1 vs. uniprot
Match: D8LHB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB5_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 9.840e-14
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = -1 
Query:  118 RQAYDRRGLLWHFTLAEQMDWGPSIEARFAHREKGPIQLLGNRIAAAIREKRRIWRDFYSVYG 306
            R+ Y   G LWHFTL EQMD+GPSI A+FAH E+  ++ LG R+A AIREKRR+ R  ++ YG
Sbjct:  440 RKVYKEHGYLWHFTLEEQMDYGPSIVAKFAHHERRVLEDLGQRLAEAIREKRRL-RQRFNQYG 501
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BLAST of mRNA_P-wetherbeei_contig1582.1.1 vs. uniprot
Match: A0A6H5K285_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K285_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.440e-13
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = -1 
Query:  118 RQAYDRRGLLWHFTLAEQMDWGPSIEARFAHREKGPIQLLGNRIAAAIREKRRIWRDFYSVYG 306
            ++ Y   G LWHFTL EQMD+GPSI A+FAH E+  ++ LG R+A AIREKRR+ R  ++ YG
Sbjct:  475 QKVYKEHGYLWHFTLEEQMDYGPSIVAKFAHHERRVLEDLGQRLAEAIREKRRL-RQRFNQYG 536
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BLAST of mRNA_P-wetherbeei_contig1582.1.1 vs. uniprot
Match: A0A836C852_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C852_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.200e-12
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = -1 
Query:  145 RQAYDRRGLLWHFTLAEQMDWGPSIEARFAHREKGPIQLLGNRIAAAIREKRRI 306
            R+ Y   G LWHFTL EQ+D+GPSI A+F  ++K P++ LGNRIA AIR+KRR+
Sbjct: 1503 RKFYKDYGYLWHFTLEEQLDYGPSIVAKFGFQDKRPLEDLGNRIAEAIRDKRRV 1556
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BLAST of mRNA_P-wetherbeei_contig1582.1.1 vs. uniprot
Match: A0A835YW21_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW21_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.820e-12
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = -1 
Query:  148 RQAYDRRGLLWHFTLAEQMDWGPSIEARFAHREKGPIQLLGNRIAAAIREKRR 306
            R+ Y   G LWHFT+ EQMD+GP+I A+FA+++K P++ LGN+IA  IREKRR
Sbjct:  224 RKYYKDYGYLWHFTMEEQMDYGPAIVAKFAYQDKRPLEELGNKIAEGIREKRR 276
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BLAST of mRNA_P-wetherbeei_contig1582.1.1 vs. uniprot
Match: A0A6V1S9Y9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S9Y9_HETAK)

HSP 1 Score: 50.8 bits (120), Expect = 2.570e-5
Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = -1 
Query:  118 VFRQAYDRRGLLWHFTLAEQMDWGPSIEARFAHREKGPIQLLGNRIAAAIREKRRIWRDFYSVYG 312
            + R+ Y   G L HFTL EQMD+GPS  A+FA  ++  +Q L + +   I   R + R + S YG
Sbjct:   76 IKRKEYRGYGYLDHFTLEEQMDYGPSTAAKFASHDRQGLQALRDHVLKVISHVRDLRRAYKSQYG 140
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1582.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LHB5_ECTSI9.840e-1457.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K285_9PHAE3.440e-1355.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C852_9STRA3.200e-1259.26Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A835YW21_9STRA3.820e-1258.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1S9Y9_HETAK2.570e-540.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1582contigP-wetherbeei_contig1582:4131..4444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size315
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186068.40958-CDS-P-wetherbeei_contig1582:4132..44441683186068.40958-CDS-P-wetherbeei_contig1582:4132..4444Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1582 4133..4444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1582.1.1prot_P-wetherbeei_contig1582.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1582 4133..4444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1582.1.1

>prot_P-wetherbeei_contig1582.1.1 ID=prot_P-wetherbeei_contig1582.1.1|Name=mRNA_P-wetherbeei_contig1582.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
VAVANDDATANTASRAAAAKIAAAHFGAEPHGLTGAFDPAVDGVKVPPDA
PLLSNGCCDAIAEQLDRPLFAVGEPGLDAGAPVHLLRQREVPQQAPSIVG
LPEN
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mRNA from alignment at P-wetherbeei_contig1582:4131..4444-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1582.1.1 ID=mRNA_P-wetherbeei_contig1582.1.1|Name=mRNA_P-wetherbeei_contig1582.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=314bp|location=Sequence derived from alignment at P-wetherbeei_contig1582:4131..4444- (Phaeothamnion wetherbeei SAG_119_79)
GTGGCTGTCGCCAACGACGACGCCACCGCAAACACCGCTTCTCGCGCCGC
CGCCGCCAAAATCGCCGCCGCTCACTTCGGGGCCGAGCCGCATGGCCTCA
CGGGCGCGTTCGATCCGGCCGTAGACGGAGTAAAAGTCCCGCCAGATGCG
CCGCTTCTCTCGAATGGCTGCTGCGATGCGATTGCCGAGCAGTTGGATCG
GCCCCTTTTCGCGGTGGGCGAACCGGGCCTCGATGCTGGGGCCCCAGTCC
ATCTGCTCCGCCAGCGTGAAGTGCCACAGCAAGCCCCTTCTATCGTAGGC
CTGCCGGAAAACGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1582:4131..4444-

>mRNA_P-wetherbeei_contig1582.1.1 ID=mRNA_P-wetherbeei_contig1582.1.1|Name=mRNA_P-wetherbeei_contig1582.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig1582:4131..4444- (Phaeothamnion wetherbeei SAG_119_79)
GTGGCTGTCGCCAACGACGACGCCACCGCAAACACCGCTTCTCGCGCCGC
CGCCGCCAAAATCGCCGCCGCTCACTTCGGGGCCGAGCCGCATGGCCTCA
CGGGCGCGTTCGATCCGGCCGTAGACGGAGTAAAAGTCCCGCCAGATGCG
CCGCTTCTCTCGAATGGCTGCTGCGATGCGATTGCCGAGCAGTTGGATCG
GCCCCTTTTCGCGGTGGGCGAACCGGGCCTCGATGCTGGGGCCCCAGTCC
ATCTGCTCCGCCAGCGTGAAGTGCCACAGCAAGCCCCTTCTATCGTAGGC
CTGCCGGAAAAC
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