prot_P-wetherbeei_contig1581.3.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig1581.3.1
Unique Nameprot_P-wetherbeei_contig1581.3.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length904
Homology
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BLAST of mRNA_P-wetherbeei_contig1581.3.1 vs. uniprot
Match: D7G7E5_ECTSI (VHL domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E5_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 6.680e-8
Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 0 
Query:  102 SSAEALERCFRGRYGLPGPPTSAFKVGFEAGQLGLELEENP-TRGYVTVKRVTPGAQAECDGRIFAGCLVVA 172
            +  E     F+   G P P  +AF+V FE G LG+ELEE P  RG V V+RV    QAE DGR+ AGCL+VA
Sbjct:  281 TETEITHMIFQREDGTPAPSRNAFRVQFEPGPLGVELEEYPGERGIVRVRRVLQAGQAELDGRLSAGCLIVA 352
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BLAST of mRNA_P-wetherbeei_contig1581.3.1 vs. uniprot
Match: A0A6H5JVY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.540e-7
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 0 
Query:  111 FRGRYGLPGPPTSAFKVGFEAGQLGLELEENP-TRGYVTVKRVTPGAQAECDGRIFAGCLVVA 172
            F+   G P P  +AF+V FE G LG+ELEE P  RG V V+RV    QAE DGR+ AGCL+VA
Sbjct:  278 FQREDGTPAPSRNAFRVQFEPGPLGVELEEYPGDRGIVRVRRVLQAGQAELDGRLSAGCLIVA 340
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1581.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7E5_ECTSI6.680e-850.00VHL domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JVY5_9PHAE1.540e-755.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037140von Hippel-Lindau disease tumour suppressor, beta domain superfamilyGENE3D2.60.40.780coord: 700..766
e-value: 4.8E-8
score: 35.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 580..675
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 829..849
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 242..267
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 475..541
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 241..267
IPR036208VHL superfamilySUPERFAMILY49468VHLcoord: 699..758

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1581contigP-wetherbeei_contig1581:2988..5699 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1581.3.1mRNA_P-wetherbeei_contig1581.3.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig1581 1881..5884 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig1581.3.1 ID=prot_P-wetherbeei_contig1581.3.1|Name=mRNA_P-wetherbeei_contig1581.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=904bp
MEAGLTVLLAGEEDLAETGGRLWYDAEARQLALAAAAAAEAAAAEAAAAH
AAAEAAAIAAGCRPAFPSGGSGGDDDNADSAGTANDQEEDDAYDVDGVGG
PSSAEALERCFRGRYGLPGPPTSAFKVGFEAGQLGLELEENPTRGYVTVK
RVTPGAQAECDGRIFAGCLVVAAAVAVEAAAGTGADAAGDATATTPTSAA
GVREDDNASAIDADGTGTAVGATGNGDAAVAVAAMTGPIDNAGTPAATND
DSGSAPSGSSAPAAPTTATLAESNFTMEVIRSLGDFEYMLRRMAAAGANQ
LDVYFLDRYAPKAIAALGPPAATAAAEDLSGSAPVLPCGSATAAPVLQRL
SRRTSRSDGKSAASSVASRGSVCAIAGRNSGSGCGSSSILTRNGAGGAGG
SSILSRGSAGGNGALDKGGGGNGILSRGSFEEGGSVDVGRPVASRNAGSP
APSAVRYSADGGWWRDGRGAREDNRRRDVVRSFPGRHWGDGDGESGQPNI
TAEPADGTGGADAATAAIRPERQGTGSRGGGGSGDGGDCGGGMSPLAEAF
AAARKLSMEETRSAFGGWGAVADGLGPHSATRRSSYEDPSEAGWHFETGG
GIAGEALAEYGNGGGGDGGSGNDGNDDDDSDGSEARTTASGGESGSSEQD
AEGKYFGGEDEEEEDAALAGRRPAQQVQLESVANEDALLRPASLPLGLGA
SAGTGAAVFVWICNGHTALALQVAWIDRGGELALRQTLQPGESYFERTFV
GHPWAFRTGLAATLAGDGFCNDGDHVEGGGGGSGSGAGECMVVRIGAAAF
AAGATNCIMWNPGRGSVSIAQQARVSTDWDGGRGLDGGGGSGRGTRVGRS
PAAVRARVHWAKAEALRELAAWRRFPPEADPDPGARHRLSRGVPHLRLVL
LGN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037140VHL_beta_dom_sf
IPR036208VHL_sf