mRNA_P-wetherbeei_contig15805.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15805.1.1
Unique NamemRNA_P-wetherbeei_contig15805.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15805.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15805contigP-wetherbeei_contig15805:612..1166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog644281.MFS40622_0783
PFAMsTPR_1,TPR_2,TPR_8
Model size555
Max annot lvl183939|Methanococci
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.97e-05
EggNOG OGsCOG0457@1|root,arCOG03038@2157|Archaea,2XUNW@28890|Euryarchaeota,23R7V@183939|Methanococci
DescriptionPFAM TPR repeat-containing protein
Cds size552
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186068.1564786-UTR-P-wetherbeei_contig15805:611..6141683186068.1564786-UTR-P-wetherbeei_contig15805:611..614Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15805 612..614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186068.1668997-CDS-P-wetherbeei_contig15805:614..11661683186068.1668997-CDS-P-wetherbeei_contig15805:614..1166Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15805 615..1166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15805.1.1prot_P-wetherbeei_contig15805.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15805 615..1166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15805.1.1

>prot_P-wetherbeei_contig15805.1.1 ID=prot_P-wetherbeei_contig15805.1.1|Name=mRNA_P-wetherbeei_contig15805.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
MAHQVVQSIELPELRWRVELGTVESLWRGGRIEEALALADSLKGQPAPTS
PEALEHYRNLQGIALRLAWLNGKSAQEMEAACRQGTPSVWQQLTYAQVLD
ALEKRPEALKVLDELGKSIKLPPAYYVTRGRLLRSLGRYKDALTPLESAL
KDPEYLSLEELYTLRWEVAECRMALKELPRALEV
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mRNA from alignment at P-wetherbeei_contig15805:612..1166+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15805.1.1 ID=mRNA_P-wetherbeei_contig15805.1.1|Name=mRNA_P-wetherbeei_contig15805.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=555bp|location=Sequence derived from alignment at P-wetherbeei_contig15805:612..1166+ (Phaeothamnion wetherbeei SAG_119_79)
CAAATGGCCCATCAAGTGGTGCAGAGCATCGAGCTTCCGGAATTGCGCTG
GCGCGTCGAGCTGGGGACCGTCGAATCGCTGTGGCGCGGGGGGCGCATCG
AGGAAGCGCTGGCTCTGGCCGACTCGCTCAAGGGCCAGCCCGCCCCTACT
TCCCCAGAAGCTCTCGAGCACTATCGCAATCTCCAGGGCATCGCCCTGCG
CCTGGCCTGGCTCAACGGCAAGTCGGCCCAAGAAATGGAAGCCGCTTGTC
GCCAGGGCACGCCTTCGGTCTGGCAGCAGTTGACGTACGCTCAGGTCCTG
GACGCTCTCGAGAAACGACCTGAGGCCCTCAAGGTGCTCGACGAATTGGG
CAAGTCCATCAAGTTGCCACCGGCTTACTATGTCACGCGGGGCCGTCTGC
TGCGCTCCTTGGGTCGCTATAAGGACGCTCTGACGCCGCTGGAAAGCGCT
CTCAAAGATCCCGAATATCTTTCTCTGGAAGAGCTCTACACGCTCCGCTG
GGAAGTCGCCGAGTGCCGCATGGCCCTCAAAGAGTTGCCCAGGGCGCTCG
AGGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15805:612..1166+

>mRNA_P-wetherbeei_contig15805.1.1 ID=mRNA_P-wetherbeei_contig15805.1.1|Name=mRNA_P-wetherbeei_contig15805.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig15805:612..1166+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCATCAAGTGGTGCAGAGCATCGAGCTTCCGGAATTGCGCTGGCG
CGTCGAGCTGGGGACCGTCGAATCGCTGTGGCGCGGGGGGCGCATCGAGG
AAGCGCTGGCTCTGGCCGACTCGCTCAAGGGCCAGCCCGCCCCTACTTCC
CCAGAAGCTCTCGAGCACTATCGCAATCTCCAGGGCATCGCCCTGCGCCT
GGCCTGGCTCAACGGCAAGTCGGCCCAAGAAATGGAAGCCGCTTGTCGCC
AGGGCACGCCTTCGGTCTGGCAGCAGTTGACGTACGCTCAGGTCCTGGAC
GCTCTCGAGAAACGACCTGAGGCCCTCAAGGTGCTCGACGAATTGGGCAA
GTCCATCAAGTTGCCACCGGCTTACTATGTCACGCGGGGCCGTCTGCTGC
GCTCCTTGGGTCGCTATAAGGACGCTCTGACGCCGCTGGAAAGCGCTCTC
AAAGATCCCGAATATCTTTCTCTGGAAGAGCTCTACACGCTCCGCTGGGA
AGTCGCCGAGTGCCGCATGGCCCTCAAAGAGTTGCCCAGGGCGCTCGAGG
TT
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