prot_P-wetherbeei_contig15786.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig15786.1.1
Unique Nameprot_P-wetherbeei_contig15786.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length201
Homology
BLAST of mRNA_P-wetherbeei_contig15786.1.1 vs. uniprot
Match: A0A6H5KK44_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK44_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 1.740e-93
Identity = 152/196 (77.55%), Postives = 163/196 (83.16%), Query Frame = 0
Query:    1 QALKAALPNVIVAGIPSVARAVINVQEGPSVVPGDG---ERYHLLVEGCGLRDVMGAPGIDGTRTKSNHIIEVEKTLGVEAARIMITEEISYIMKAYGITIDRRHLLLLSDVMTFKGEVLGITRFGVGKMRESVLMLASFEKTTDHLFDAAVHARTDRIVGVSECIIMGVPIPLGTGLFKLLSAAERPLVPAKPAL 193
            QALKA LP VIV GIPSV RAVINVQE  S         ERYHLLVEG GL  VMGAPGIDG+RT+SNHIIEV  TLGVEAARI+I+EEI+YIMKAYGI+IDRRHLLLL+DVMTFKGEVLGITRFGV KMRESVLMLASFEKTTDHLFDA+VH R D IVGVSECIIMG+PIPLGTGLFKLL   ++   P  P L
Sbjct:   26 QALKAVLPGVIVQGIPSVNRAVINVQENSSGAASGAAPKERYHLLVEGYGLAAVMGAPGIDGSRTRSNHIIEVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLLMNEDKIKPPPTPEL 221          
BLAST of mRNA_P-wetherbeei_contig15786.1.1 vs. uniprot
Match: A0A397CZY2_9STRA (DNA-directed RNA polymerase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CZY2_9STRA)

HSP 1 Score: 268 bits (685), Expect = 5.310e-86
Identity = 136/185 (73.51%), Postives = 156/185 (84.32%), Query Frame = 0
Query:    1 QALKAALPNVIVAGIPSVARAVINVQEGPSVVPGDGERYHLLVEGCGLRDVMGAPGIDGTRTKSNHIIEVEKTLGVEAARIMITEEISYIMKAYGITIDRRHLLLLSDVMTFKGEVLGITRFGVGKMRESVLMLASFEKTTDHLFDAAVHARTDRIVGVSECIIMGVPIPLGTGLFKLLSAAERP 185
            Q+LKAALP+VIV GIP+V RAVIN +EG        ++ HLLVEG GL DVMG PG+DG  T SNHIIEVEKTLG+EAAR +I  E+SYIM AYGI IDRRHL+LLSD+MTFKGEVLGITRFG+ KM+ESVLMLASFEKTTDHLFDAAVH+RTD IVGVSECIIMG+PI +GTG+FKLL   ++P
Sbjct:  212 QSLKAALPSVIVQGIPTVNRAVINYEEGKD------KKLHLLVEGYGLSDVMGIPGVDGLHTTSNHIIEVEKTLGIEAARFLIASEVSYIMSAYGIGIDRRHLMLLSDIMTFKGEVLGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHSRTDAIVGVSECIIMGIPIAVGTGIFKLLRQVDQP 390          
BLAST of mRNA_P-wetherbeei_contig15786.1.1 vs. uniprot
Match: A0A662XJT2_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XJT2_9STRA)

HSP 1 Score: 265 bits (678), Expect = 1.050e-85
Identity = 134/187 (71.66%), Postives = 157/187 (83.96%), Query Frame = 0
Query:    1 QALKAALPNVIVAGIPSVARAVINVQEGPSVVPGDGERYHLLVEGCGLRDVMGAPGIDGTRTKSNHIIEVEKTLGVEAARIMITEEISYIMKAYGITIDRRHLLLLSDVMTFKGEVLGITRFGVGKMRESVLMLASFEKTTDHLFDAAVHARTDRIVGVSECIIMGVPIPLGTGLFKLLSAAERPLV 187
            QALKA LP+VIV GIP+V RAVIN +E     P   + +HLLVEG GL +VMG PG+DG  T SNHIIEVEKTLG+EAAR +I+ E++YIM AYGI IDRRH +LLSD+MTFKGEVLGITRFG+ KM+ESVLMLASFEKTTDHLFDAAVH+RTD IVGVSECIIMG+PIP+GTG+FKLL   ++P +
Sbjct:  150 QALKAQLPSVIVQGIPTVNRAVINYEEQQD--PSAAKAHHLLVEGYGLAEVMGIPGVDGLHTTSNHIIEVEKTLGIEAARELISSEVNYIMSAYGIGIDRRHQMLLSDIMTFKGEVLGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHSRTDAIVGVSECIIMGIPIPIGTGIFKLLRQVDKPRI 334          
BLAST of mRNA_P-wetherbeei_contig15786.1.1 vs. uniprot
Match: D7FU80_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU80_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 1.420e-84
Identity = 153/196 (78.06%), Postives = 163/196 (83.16%), Query Frame = 0
Query:    1 QALKAALPNVIVAGIPSVARAVINVQEGPSVVPGDG---ERYHLLVEGCGLRDVMGAPGIDGTRTKSNHIIEVEKTLGVEAARIMITEEISYIMKAYGITIDRRHLLLLSDVMTFKGEVLGITRFGVGKMRESVLMLASFEKTTDHLFDAAVHARTDRIVGVSECIIMGVPIPLGTGLFKLLSAAERPLVPAKPAL 193
            QALKA LP VIV GIPSV RAVINVQE  S         ERYHLLVEG GL  VMGAPGIDGTRT+SNHIIEV  TLGVEAARI+I+EEI+YIMKAYGI+IDRRHLLLL+DVMTFKGEVLGITRFGV KMRESVLMLASFEKTTDHLFDA+VH R D IVGVSECIIMG+PIPLGTGLFKLL   ++   P  P L
Sbjct: 1320 QALKAVLPGVIVQGIPSVNRAVINVQENSSGAASGAAPKERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLFKLLMNEDKIKPPPTPEL 1515          
BLAST of mRNA_P-wetherbeei_contig15786.1.1 vs. uniprot
Match: A0A7S1D4Y3_CYCTE (DNA-directed RNA polymerase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4Y3_CYCTE)

HSP 1 Score: 264 bits (675), Expect = 1.670e-84
Identity = 140/186 (75.27%), Postives = 152/186 (81.72%), Query Frame = 0
Query:    1 QALKAALPNVIVAGIPSVARAVINVQEGPSVVPGDGERYHLLVEGCGLRDVMGAPGIDGTRTKSNHIIEVEKTLGVEAARIMITEEISYIMKAYGITIDRRHLLLLSDVMTFKGEVLGITRFGVGKMRESVLMLASFEKTTDHLFDAAVHARTDRIVGVSECIIMGVPIPLGTGLFKLLSAAERPL 186
            QALK  LP VIV GIPSV RAVIN ++      G    YHLLVEG GL +VMG+PG+DG+ T +NHIIEVE TLGVEAAR  I+ EISYIM AYGI ID RHLLLLSDVMTFKGEVLGITRFGV KM+ESVLMLASFEKTTDHLFDAAVH RTD IVGVSECIIMG+PIPLG+GLFKLL  A  P+
Sbjct:  205 QALKVTLPQVIVQGIPSVNRAVINEED-----KGGRTSYHLLVEGYGLAEVMGSPGVDGSHTTTNHIIEVEDTLGVEAARTQISSEISYIMNAYGIGIDSRHLLLLSDVMTFKGEVLGITRFGVSKMKESVLMLASFEKTTDHLFDAAVHGRTDAIVGVSECIIMGIPIPLGSGLFKLLKKATAPV 385          
BLAST of mRNA_P-wetherbeei_contig15786.1.1 vs. uniprot
Match: A0A7S2FDK6_9STRA (DNA-directed RNA polymerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDK6_9STRA)

HSP 1 Score: 260 bits (665), Expect = 3.080e-84
Identity = 138/184 (75.00%), Postives = 153/184 (83.15%), Query Frame = 0
Query:    1 QALKAALPNVIVAGIPSVARAVINVQEGPSVVPGDGERYHLLVEGCGLRDVMGAPGIDGTRTKSNHIIEVEKTLGVEAARIMITEEISYIMKAYGITIDRRHLLLLSDVMTFKGEVLGITRFGVGKMRESVLMLASFEKTTDHLFDAAVHARTDRIVGVSECIIMGVPIPLGTGLFKLLSAAER 184
            QALKAALP VIV G P+V+RAVIN ++  +    D  +Y+LLVEG GL DVMGAPGIDG  T SNH++EV   LG+EAAR  I++EISYIM AYGI ID RHL+LLSDVMTFKGEVLGITRFGV KMRESVLMLASFEKTTDHLFDAAVH+R D IVGVSECIIMGVPIPLGTGLFKLL   +R
Sbjct:  103 QALKAALPGVIVQGTPTVSRAVINSEDDETT---DKTKYNLLVEGYGLADVMGAPGIDGLNTVSNHVLEVNVILGIEAARTKISDEISYIMAAYGIHIDLRHLMLLSDVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDAAVHSRRDDIVGVSECIIMGVPIPLGTGLFKLLRDVDR 283          
BLAST of mRNA_P-wetherbeei_contig15786.1.1 vs. uniprot
Match: A0A425DG46_9STRA (DNA-directed RNA polymerase n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DG46_9STRA)

HSP 1 Score: 268 bits (685), Expect = 7.120e-84
Identity = 136/185 (73.51%), Postives = 156/185 (84.32%), Query Frame = 0
Query:    1 QALKAALPNVIVAGIPSVARAVINVQEGPSVVPGDGERYHLLVEGCGLRDVMGAPGIDGTRTKSNHIIEVEKTLGVEAARIMITEEISYIMKAYGITIDRRHLLLLSDVMTFKGEVLGITRFGVGKMRESVLMLASFEKTTDHLFDAAVHARTDRIVGVSECIIMGVPIPLGTGLFKLLSAAERP 185
            Q+LKAALP+VIV GIP+V RAVIN +EG        ++ HLLVEG GL DVMG PG+DG  T SNHIIEVEKTLG+EAAR +I  E+SYIM AYGI IDRRHL+LLSD+MTFKGEVLGITRFG+ KM+ESVLMLASFEKTTDHLFDAAVH+RTD IVGVSECIIMG+PI +GTG+FKLL   ++P
Sbjct:  395 QSLKAALPSVIVQGIPTVNRAVINYEEGKD------KKLHLLVEGYGLSDVMGIPGVDGLHTTSNHIIEVEKTLGIEAARFLIASEVSYIMSAYGIGIDRRHLMLLSDIMTFKGEVLGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHSRTDAIVGVSECIIMGIPIAVGTGIFKLLRQVDQP 573          
BLAST of mRNA_P-wetherbeei_contig15786.1.1 vs. uniprot
Match: A0A6T7J7L8_9STRA (DNA-directed RNA polymerase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7J7L8_9STRA)

HSP 1 Score: 261 bits (666), Expect = 2.450e-83
Identity = 144/196 (73.47%), Postives = 155/196 (79.08%), Query Frame = 0
Query:    1 QALKAALPNVIVAGIPSVARAVINVQEGPSVVPGDGER-YHLLVEGCGLRDVMGAPGIDGTRTKSNHIIEVEKTLGVEAARIMITEEISYIMKAYGITIDRRHLLLLSDVMTFKGEVLGITRFGVGKMRESVLMLASFEKTTDHLFDAAVHARTDRIVGVSECIIMGVPIPLGTGLFKLLSAAERPLVPAKPALTL 195
            QALK ALP VIV GI +V RAVIN ++       DG   YHLLVEGCGL  VMG+ G+DG  T +NHIIEVE+TLGVEAARI I+ EISYIM AYGI ID RHLLLLSDVMTFKGEVLGITRFGV KMRESVLMLASFEKTTDHLFDAAVH R+D IVGVSECIIMG+PIPLGTGLFKLL  A  P+    P   L
Sbjct:  185 QALKVALPLVIVQGIATVNRAVINEEDK------DGRASYHLLVEGCGLSAVMGSNGVDGHHTTTNHIIEVEQTLGVEAARIKISSEISYIMGAYGIGIDSRHLLLLSDVMTFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDAAVHGRSDAIVGVSECIIMGIPIPLGTGLFKLLKRATAPVKRTAPKSAL 374          
BLAST of mRNA_P-wetherbeei_contig15786.1.1 vs. uniprot
Match: A0A836CEF0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEF0_9STRA)

HSP 1 Score: 276 bits (706), Expect = 1.990e-82
Identity = 148/192 (77.08%), Postives = 162/192 (84.38%), Query Frame = 0
Query:    1 QALKAALPNVIVAGIPSVARAVINVQEGPSVVPGDGERYHLLVEGCGLRDVMGAPGIDGTRTKSNHIIEVEKTLGVEAARIMITEEISYIMKAYGITIDRRHLLLLSDVMTFKGEVLGITRFGVGKMRESVLMLASFEKTTDHLFDAAVHARTDRIVGVSECIIMGVPIPLGTGLFKLLSAAERPLVPAKPA 192
            +ALK  LP+VIV GIPS++RAVI  +E  S     GE+YHLLVEG GL  VMGA GI+GTRTKSNHIIE+EKTLG+EAAR  ITEEISYIM AYGI++DRRHLLLLSDVM+FKGEVLGITRFGV KMRESVLMLASFEKTTDHLFDAAVHAR D IVGVSECIIMG+PIPLGTGLFKLL A   P    KP+
Sbjct: 1220 KALKKVLPSVIVQGIPSISRAVICCEEDRSA----GEKYHLLVEGYGLAAVMGAAGIEGTRTKSNHIIEMEKTLGIEAARRTITEEISYIMSAYGISVDRRHLLLLSDVMSFKGEVLGITRFGVSKMRESVLMLASFEKTTDHLFDAAVHARRDAIVGVSECIIMGIPIPLGTGLFKLLRADPDPPELPKPS 1407          
BLAST of mRNA_P-wetherbeei_contig15786.1.1 vs. uniprot
Match: A0A3R7DSM0_9STRA (DNA-directed RNA polymerase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7DSM0_9STRA)

HSP 1 Score: 268 bits (685), Expect = 2.360e-82
Identity = 136/185 (73.51%), Postives = 156/185 (84.32%), Query Frame = 0
Query:    1 QALKAALPNVIVAGIPSVARAVINVQEGPSVVPGDGERYHLLVEGCGLRDVMGAPGIDGTRTKSNHIIEVEKTLGVEAARIMITEEISYIMKAYGITIDRRHLLLLSDVMTFKGEVLGITRFGVGKMRESVLMLASFEKTTDHLFDAAVHARTDRIVGVSECIIMGVPIPLGTGLFKLLSAAERP 185
            Q+LKAALP+VIV GIP+V RAVIN +EG        ++ HLLVEG GL DVMG PG+DG  T SNHIIEVEKTLG+EAAR +I  E+SYIM AYGI IDRRHL+LLSD+MTFKGEVLGITRFG+ KM+ESVLMLASFEKTTDHLFDAAVH+RTD IVGVSECIIMG+PI +GTG+FKLL   ++P
Sbjct:  558 QSLKAALPSVIVQGIPTVNRAVINYEEGKD------KKLHLLVEGYGLSDVMGIPGVDGLHTTSNHIIEVEKTLGIEAARFLIASEVSYIMSAYGIGIDRRHLMLLSDIMTFKGEVLGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHSRTDAIVGVSECIIMGIPIAVGTGIFKLLRQVDQP 736          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15786.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KK44_9PHAE1.740e-9377.55DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A397CZY2_9STRA5.310e-8673.51DNA-directed RNA polymerase n=1 Tax=Aphanomyces as... [more]
A0A662XJT2_9STRA1.050e-8571.66DNA-directed RNA polymerase (Fragment) n=1 Tax=Not... [more]
D7FU80_ECTSI1.420e-8478.06DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A7S1D4Y3_CYCTE1.670e-8475.27DNA-directed RNA polymerase n=1 Tax=Cyclophora ten... [more]
A0A7S2FDK6_9STRA3.080e-8475.00DNA-directed RNA polymerase n=1 Tax=Florenciella p... [more]
A0A425DG46_9STRA7.120e-8473.51DNA-directed RNA polymerase n=3 Tax=Aphanomyces as... [more]
A0A6T7J7L8_9STRA2.450e-8373.47DNA-directed RNA polymerase n=1 Tax=Attheya septen... [more]
A0A836CEF0_9STRA1.990e-8277.08DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A3R7DSM0_9STRA2.360e-8273.51DNA-directed RNA polymerase n=1 Tax=Aphanomyces as... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 12..130
e-value: 3.8E-20
score: 72.4
NoneNo IPR availableGENE3D1.10.150.390coord: 131..175
e-value: 1.2E-21
score: 78.4
NoneNo IPR availablePANTHERPTHR19376:SF32DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1coord: 1..179
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 4..180
IPR045867DNA-directed RNA polymerase, subunit beta-primePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15786contigP-wetherbeei_contig15786:118..1173 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15786.1.1mRNA_P-wetherbeei_contig15786.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig15786 118..1173 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig15786.1.1 ID=prot_P-wetherbeei_contig15786.1.1|Name=mRNA_P-wetherbeei_contig15786.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=201bp
QALKAALPNVIVAGIPSVARAVINVQEGPSVVPGDGERYHLLVEGCGLRD
VMGAPGIDGTRTKSNHIIEVEKTLGVEAARIMITEEISYIMKAYGITIDR
RHLLLLSDVMTFKGEVLGITRFGVGKMRESVLMLASFEKTTDHLFDAAVH
ARTDRIVGVSECIIMGVPIPLGTGLFKLLSAAERPLVPAKPALTLSERSV
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007081RNA_pol_Rpb1_5
IPR045867DNA-dir_RpoC_beta_prime