mRNA_P-wetherbeei_contig15753.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15753.1.1
Unique NamemRNA_P-wetherbeei_contig15753.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15753.1.1 vs. uniprot
Match: A0A6N1X6G5_9BURK (Uncharacterized protein n=1 Tax=Acidovorax antarcticus TaxID=2743470 RepID=A0A6N1X6G5_9BURK)

HSP 1 Score: 54.7 bits (130), Expect = 6.830e-8
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 PVVQAALETVSALLGSVTVLAKAVWGLGARTIMTLAARAHVLIAVLHS 144
            P+VQAALETV  L G+V+VLA A+WGLGA  ++ LA  AHVLIAVL S
Sbjct:   75 PMVQAALETVPMLAGAVSVLAWAIWGLGALLLLALAIGAHVLIAVLKS 122
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BLAST of mRNA_P-wetherbeei_contig15753.1.1 vs. uniprot
Match: A0A0Q8S019_9BURK (Uncharacterized protein n=2 Tax=unclassified Acidovorax TaxID=2684926 RepID=A0A0Q8S019_9BURK)

HSP 1 Score: 53.9 bits (128), Expect = 1.360e-7
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    4 VVQAALETVSALLGSVTVLAKAVWGLGARTIMTLAARAHVLIAVL 138
            VVQAALETV AL G+V+VLA  +WGLGA  +M LA  AHVLIAVL
Sbjct:   76 VVQAALETVPALSGAVSVLAWVIWGLGALALMALAVGAHVLIAVL 120
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BLAST of mRNA_P-wetherbeei_contig15753.1.1 vs. uniprot
Match: A0A0Q4S8T9_9BURK (Uncharacterized protein n=3 Tax=unclassified Acidovorax TaxID=2684926 RepID=A0A0Q4S8T9_9BURK)

HSP 1 Score: 50.1 bits (118), Expect = 4.120e-6
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 PVVQAALETVSALLGSVTVLAKAVWGLGARTIMTLAARAHVLIAV 135
            PVVQ ALE V AL G+V+VLA A+WGLGA  ++ LA  AHVLIA+
Sbjct:   75 PVVQGALEAVPALSGTVSVLAWALWGLGAAVLLALAIGAHVLIAL 119
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BLAST of mRNA_P-wetherbeei_contig15753.1.1 vs. uniprot
Match: UPI001C47578C (hypothetical protein n=1 Tax=Acidovorax sp. sic0104 TaxID=2854784 RepID=UPI001C47578C)

HSP 1 Score: 49.7 bits (117), Expect = 5.800e-6
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 PVVQAALETVSALLGSVTVLAKAVWGLGARTIMTLAARAHVLIAV 135
            PVVQ+ALE V AL G+V+V+A A+WGLGA  ++ LA  AH+LIAV
Sbjct:   75 PVVQSALEAVPALSGAVSVMAWAIWGLGAVVLVALAVGAHLLIAV 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15753.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6N1X6G5_9BURK6.830e-866.67Uncharacterized protein n=1 Tax=Acidovorax antarct... [more]
A0A0Q8S019_9BURK1.360e-771.11Uncharacterized protein n=2 Tax=unclassified Acido... [more]
A0A0Q4S8T9_9BURK4.120e-664.44Uncharacterized protein n=3 Tax=unclassified Acido... [more]
UPI001C47578C5.800e-662.22hypothetical protein n=1 Tax=Acidovorax sp. sic010... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15753contigP-wetherbeei_contig15753:1..177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog358220.C380_10320
Model size177
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.79e-06
EggNOG OGs2B7VP@1|root,3212J@2|Bacteria,1RKDD@1224|Proteobacteria,2VSR9@28216|Betaproteobacteria
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186066.28995-CDS-P-wetherbeei_contig15753:0..1771683186066.28995-CDS-P-wetherbeei_contig15753:0..177Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15753 1..177 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15753.1.1prot_P-wetherbeei_contig15753.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15753 1..177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15753.1.1

>prot_P-wetherbeei_contig15753.1.1 ID=prot_P-wetherbeei_contig15753.1.1|Name=mRNA_P-wetherbeei_contig15753.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=59bp
PVVQAALETVSALLGSVTVLAKAVWGLGARTIMTLAARAHVLIAVLHSES
PDESQYAGH
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mRNA from alignment at P-wetherbeei_contig15753:1..177-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15753.1.1 ID=mRNA_P-wetherbeei_contig15753.1.1|Name=mRNA_P-wetherbeei_contig15753.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig15753:1..177- (Phaeothamnion wetherbeei SAG_119_79)
CCTGTGGTCCAAGCGGCGCTGGAAACCGTGTCCGCCCTGTTGGGCTCCGT
CACGGTGCTGGCCAAGGCCGTCTGGGGCCTGGGCGCGCGGACCATCATGA
CCCTGGCCGCGAGAGCGCATGTCCTGATTGCTGTGCTTCATTCAGAGTCA
CCAGACGAGTCCCAGTACGCTGGCCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15753:1..177-

>mRNA_P-wetherbeei_contig15753.1.1 ID=mRNA_P-wetherbeei_contig15753.1.1|Name=mRNA_P-wetherbeei_contig15753.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig15753:1..177- (Phaeothamnion wetherbeei SAG_119_79)
CCTGTGGTCCAAGCGGCGCTGGAAACCGTGTCCGCCCTGTTGGGCTCCGT
CACGGTGCTGGCCAAGGCCGTCTGGGGCCTGGGCGCGCGGACCATCATGA
CCCTGGCCGCGAGAGCGCATGTCCTGATTGCTGTGCTTCATTCAGAGTCA
CCAGACGAGTCCCAGTACGCTGGCCAC
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