mRNA_P-wetherbeei_contig1575.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1575.2.1
Unique NamemRNA_P-wetherbeei_contig1575.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1575.2.1 vs. uniprot
Match: A0A836CMK3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMK3_9STRA)

HSP 1 Score: 139 bits (351), Expect = 7.830e-34
Identity = 118/331 (35.65%), Postives = 158/331 (47.73%), Query Frame = 3 
Query:  273 GPACRTFDTC-PASR-------VRRTVLHASEEVEEFNFDMDVGAMVDLEELISAAKQNGNVPGS-NLLYEFGDGVWLLMQVAYDRRIRLFGSSSTTELSRIASTLPDDALCVFTGALSAKSAKRLLGVKPALHAVVARDLDGAAALNDALVAEKERLAARPLTRVSRSRERFLSGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLARAIGERCPALELRGLWGSDDADGSYAALQAVLADDALAATRAQRRTPAPRLVLPFLG-EESAAWQKTLVAXXXXXXXXXXXAIVWRFAFE 1235
            G AC  F TC PAS        VRR V   SEEVE F+ D D+  +  +   I+  KQ G VP S N++Y+   G WLLMQVAYDR+I+LF S S   ++ +A+ +PDDA  +FTGA   K AKRLL ++  LH+VV  D   A AL+DA+  E+ RLAA+ L++VSR+RER+L+ GGG                                                            LA  + E CP +E+ GLWG  +  G+YA LQ V         +A    P  ++ LP+ G EES  W + L             +I+W F FE
Sbjct:   13 GSAC-AFHTCSPASASVRHKNSVRRRV---SEEVESFDVDFDIDRLDAMNTYITDVKQKGYVPASSNIVYDCTHGQWLLMQVAYDRKIKLFASRSAAGVADLAAIVPDDAQVLFTGAFLPKHAKRLLKLRN-LHSVVVPDAAAARALSDAMADERARLAAKGLSKVSRARERYLTAGGGAQLAPPDTAVLERIRVFLKLPEEGSTTAAAVAAT--------------------------LAE-VREGCPGVEVMGLWG--EGRGAYALLQEV---------KAAVNAPKLKVTLPYRGVEESFKWNQGL--------GEGRGSIIWTFEFE 292
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BLAST of mRNA_P-wetherbeei_contig1575.2.1 vs. uniprot
Match: D7FMZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMZ7_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.170e-25
Identity = 73/155 (47.10%), Postives = 104/155 (67.10%), Query Frame = 3 
Query:  339 SEEVEEFNFDMDVGAMVDLEEL------ISAAKQNGNVPGSN-LLYEFGDGVWLLMQVAYDRRIRLFGSSSTTELSRIASTLPDDALCVFTGALSAKSAKRLLGVKPALHAVVARDLDGAAALNDALVAEKERLAARPLTRVSRSRERFLSGGGG 782
            +EEVE+F  DM+V    D E+L      I+  K  G VP S+ L+Y+   G WLL Q+AYDR+IRLF S S  +L  I+S+LPD++  +F+GAL  K  KR+L +K  L AVVARD +   A+ +++ AE++RLAA+ L+R+S+SRER+L   GG
Sbjct:    3 TEEVEDFEIDMEV----DTEKLEVFGTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKIRLFSSRSVRQLLSISSSLPDNSRFIFSGALIPKQIKRILKMK-GLSAVVARDAESVVAMEESIDAERKRLAAKGLSRISQSRERYLLEKGG 152
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1575.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CMK3_9STRA7.830e-3435.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FMZ7_ECTSI1.170e-2547.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1575contigP-wetherbeei_contig1575:647..2548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1622
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_002900.1
Cds size1221
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186066.068786-UTR-P-wetherbeei_contig1575:646..9311683186066.068786-UTR-P-wetherbeei_contig1575:646..931Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1575 647..931 -
1683186066.1057837-UTR-P-wetherbeei_contig1575:2432..25481683186066.1057837-UTR-P-wetherbeei_contig1575:2432..2548Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1575 2433..2548 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186066.0853128-CDS-P-wetherbeei_contig1575:931..17801683186066.0853128-CDS-P-wetherbeei_contig1575:931..1780Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1575 932..1780 -
1683186066.0957243-CDS-P-wetherbeei_contig1575:2060..24321683186066.0957243-CDS-P-wetherbeei_contig1575:2060..2432Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1575 2061..2432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1575.2.1prot_P-wetherbeei_contig1575.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1575 932..2432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1575.2.1

>prot_P-wetherbeei_contig1575.2.1 ID=prot_P-wetherbeei_contig1575.2.1|Name=mRNA_P-wetherbeei_contig1575.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=407bp
MRQSTRRHHHGTLLFAVAASFRRAVPFTLGTAPSFLESRTTPGCRNAGYR
WLGPACRTFDTCPASRVRRTVLHASEEVEEFNFDMDVGAMVDLEELISAA
KQNGNVPGSNLLYEFGDGVWLLMQVAYDRRIRLFGSSSTTELSRIASTLP
DDALCVFTGALSAKSAKRLLGVKPALHAVVARDLDGAAALNDALVAEKER
LAARPLTRVSRSRERFLSGGGGSGESGGGGNGGGGKAGPASQLSDTIGLF
VAVAAAAADSGGGCGGADGSVGSCGGAAAAAALARAIGERCPALELRGLW
GSDDADGSYAALQAVLADDALAATRAQRRTPAPRLVLPFLGEESAAWQKT
LVAAAGGSTVGGGGAIVWRFAFEPEEDDGASSFFGDMEIEEGEEEDGSGD
GRLWED*
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mRNA from alignment at P-wetherbeei_contig1575:647..2548-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1575.2.1 ID=mRNA_P-wetherbeei_contig1575.2.1|Name=mRNA_P-wetherbeei_contig1575.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1902bp|location=Sequence derived from alignment at P-wetherbeei_contig1575:647..2548- (Phaeothamnion wetherbeei SAG_119_79)
AAACCAACCAATTAATGGCTACAAGTGCGGCTAACACTGTTCCCATTGGT
TGATTCATTTCGGCCGCACTGGTACTGGTCCAACCTGTGCATCATTTCCT
CCTCCCCTTGTACGTCATGCGACAATCGACACGAAGGCACCACCACGGGA
CGTTGCTTTTTGCGGTAGCGGCGTCGTTCCGAAGGGCAGTGCCATTTACC
CTCGGAACTGCACCCTCATTTCTCGAAAGCAGGACGACTCCCGGCTGCAG
AAATGCCGGATATCGATGGCTTGGCCCTGCTTGCCGAACATTCGACACCT
GTCCGGCCTCGCGGGTTCGCCGAACGGTATTGCACGCGAGTGAGGAAGTG
GAGGAGTTCAACTTTGACATGGATGTCGGAGCGATGGTAGACCTCGAGGA
ACTCATCAGCGCAGCGAAGCAAAATGGAAACGTGCCGGGAAGCAACCTTT
TATATGAATTTGGCGATGGAGTATGGCTTTTGATGCAGGTAATGGCGACC
AAGCGAGTGAAAAGGTTTGAGTGTTCCCGAGATTCTTTTCCTCCTATCGA
GACGCGTCCTCCTCTACTGAACAAAAATCTTGCCTGCATGCATTGAAACC
GCTTCTGCGTGTCGGTGCGCGGCCTCGTCCCTCAAAGTTCAGGGACTTTT
AACGCCGCTCTCCCTGTCCTCTCCTCCCTTCCCTTCTTCCAATAAAACCC
AATGGTTTTCCTCTTCCTTTCCTCGTCCTCCCTTTCCCTTCATTCCTTCC
GTACCCTCTTCCAAAAAGGTGGCCTACGACCGCCGCATCCGCCTCTTTGG
CTCCTCCAGCACGACCGAGCTCTCCCGCATCGCGTCCACCCTTCCGGACG
ATGCCCTCTGCGTCTTCACTGGCGCGCTCTCCGCCAAGTCCGCCAAGCGG
CTGCTCGGCGTCAAGCCTGCGCTGCACGCCGTCGTCGCCCGCGACCTGGA
CGGCGCGGCAGCACTGAATGACGCTCTCGTCGCGGAGAAGGAGCGGCTCG
CGGCGCGGCCGCTGACGCGCGTCTCGCGCTCCCGGGAGCGCTTCCTCTCC
GGCGGCGGTGGTAGTGGCGAAAGCGGCGGGGGGGGAAATGGCGGCGGCGG
CAAAGCTGGTCCGGCGTCACAGCTGTCCGACACGATCGGCTTGTTTGTCG
CCGTCGCTGCTGCGGCGGCGGACAGCGGCGGCGGTTGCGGCGGCGCTGAC
GGAAGCGTCGGAAGCTGCGGGGGCGCCGCTGCGGCAGCGGCACTGGCACG
GGCCATTGGCGAGCGCTGCCCGGCTCTCGAACTCCGCGGCCTGTGGGGCA
GCGATGACGCCGATGGCAGCTACGCGGCGTTGCAGGCCGTCCTGGCCGAC
GATGCGCTCGCCGCCACGCGCGCGCAGCGACGGACGCCGGCCCCGCGACT
GGTGCTGCCGTTCCTCGGGGAGGAGTCGGCGGCGTGGCAAAAGACTTTGG
TGGCCGCCGCCGGCGGCAGCACCGTCGGCGGCGGTGGCGCCATCGTCTGG
CGCTTCGCCTTCGAGCCTGAAGAGGACGATGGCGCGAGCAGTTTCTTTGG
GGACATGGAAATCGAGGAGGGGGAAGAGGAAGATGGCAGTGGCGACGGCC
GTTTGTGGGAGGACTGATTTACTGATCTCTTTAAACGCATTGGCATTTGA
ATTTGCCTTCCCAGTGTCAGGCGCCTTTTGCCGTGCTTCACATAGTTGTG
TCTTGAGGGGACGTAGCTTGCACTTTCAAAAGAGCTGAGCGAACTTTGAG
GCACATAGTGGTCCTTTGAAAATTTCTTCGAAAGACAGATGTAGTGGCAC
CGTGAGCGTTCCGTTGCTCTTACTTTGTTCAAGTGACCCGCCTACAGCAT
CTCTGCCCATCTTTACAACCACCTCATAGACAAACATGCCTTTGAATAAG
TG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1575:647..2548-

>mRNA_P-wetherbeei_contig1575.2.1 ID=mRNA_P-wetherbeei_contig1575.2.1|Name=mRNA_P-wetherbeei_contig1575.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1221bp|location=Sequence derived from alignment at P-wetherbeei_contig1575:647..2548- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGACAATCGACACGAAGGCACCACCACGGGACGTTGCTTTTTGCGGT
AGCGGCGTCGTTCCGAAGGGCAGTGCCATTTACCCTCGGAACTGCACCCT
CATTTCTCGAAAGCAGGACGACTCCCGGCTGCAGAAATGCCGGATATCGA
TGGCTTGGCCCTGCTTGCCGAACATTCGACACCTGTCCGGCCTCGCGGGT
TCGCCGAACGGTATTGCACGCGAGTGAGGAAGTGGAGGAGTTCAACTTTG
ACATGGATGTCGGAGCGATGGTAGACCTCGAGGAACTCATCAGCGCAGCG
AAGCAAAATGGAAACGTGCCGGGAAGCAACCTTTTATATGAATTTGGCGA
TGGAGTATGGCTTTTGATGCAGGTGGCCTACGACCGCCGCATCCGCCTCT
TTGGCTCCTCCAGCACGACCGAGCTCTCCCGCATCGCGTCCACCCTTCCG
GACGATGCCCTCTGCGTCTTCACTGGCGCGCTCTCCGCCAAGTCCGCCAA
GCGGCTGCTCGGCGTCAAGCCTGCGCTGCACGCCGTCGTCGCCCGCGACC
TGGACGGCGCGGCAGCACTGAATGACGCTCTCGTCGCGGAGAAGGAGCGG
CTCGCGGCGCGGCCGCTGACGCGCGTCTCGCGCTCCCGGGAGCGCTTCCT
CTCCGGCGGCGGTGGTAGTGGCGAAAGCGGCGGGGGGGGAAATGGCGGCG
GCGGCAAAGCTGGTCCGGCGTCACAGCTGTCCGACACGATCGGCTTGTTT
GTCGCCGTCGCTGCTGCGGCGGCGGACAGCGGCGGCGGTTGCGGCGGCGC
TGACGGAAGCGTCGGAAGCTGCGGGGGCGCCGCTGCGGCAGCGGCACTGG
CACGGGCCATTGGCGAGCGCTGCCCGGCTCTCGAACTCCGCGGCCTGTGG
GGCAGCGATGACGCCGATGGCAGCTACGCGGCGTTGCAGGCCGTCCTGGC
CGACGATGCGCTCGCCGCCACGCGCGCGCAGCGACGGACGCCGGCCCCGC
GACTGGTGCTGCCGTTCCTCGGGGAGGAGTCGGCGGCGTGGCAAAAGACT
TTGGTGGCCGCCGCCGGCGGCAGCACCGTCGGCGGCGGTGGCGCCATCGT
CTGGCGCTTCGCCTTCGAGCCTGAAGAGGACGATGGCGCGAGCAGTTTCT
TTGGGGACATGGAAATCGAGGAGGGGGAAGAGGAAGATGGCAGTGGCGAC
GGCCGTTTGTGGGAGGACTGA
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