mRNA_P-wetherbeei_contig15722.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15722.1.1
Unique NamemRNA_P-wetherbeei_contig15722.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15722.1.1 vs. uniprot
Match: A0A7C4XRZ7_9HYPH (CvpA family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XRZ7_9HYPH)

HSP 1 Score: 172 bits (437), Expect = 1.420e-51
Identity = 99/185 (53.51%), Postives = 129/185 (69.73%), Query Frame = 1
Query:    7 GPLTYLDAVLVAICLLSGILAMYRGLSREVLSIMSWVLAAGAGFAVVMFQHSFAEDLAKQVSGAETMPANQVLIVKIGLGIIIAIITLVAVHLVTSRISDAILESRIGLIDRVGGLAFGVVRGFAIVLPLFMFYNKFVPEKDQHTFVTQAKSRPLLISAGKVIDPPLQYFFDRYLNKSAPGEARP 561
            G  TYLDA LV + LLSG+LAM RGLSRE+LSI+SW+L   AG  V   Q S A D+A QV     MP    ++V+ GL  I+ +I LV +HL+T  ISD I +SR+GLIDRV G  FG+ RGF +VL LFM Y KFVPEKDQH  VT+A+SRP+L S+G+ ++  L +F+DR LN+ + G+ +P
Sbjct:    4 GQFTYLDAALVGVALLSGLLAMNRGLSRELLSILSWILGPLAGLYVWFHQASLAADMAPQVG----MPP---VVVQAGLAAIVGLIVLVVLHLITMHISDTIQDSRVGLIDRVLGFLFGIGRGFVLVLILFMGYQKFVPEKDQHLIVTKAQSRPMLESSGRSLETTLTWFYDRLLNRGS-GDQQP 180          
BLAST of mRNA_P-wetherbeei_contig15722.1.1 vs. uniprot
Match: A0A2W4LFU3_9PROT (Colicin V production protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4LFU3_9PROT)

HSP 1 Score: 164 bits (415), Expect = 7.340e-48
Identity = 90/164 (54.88%), Postives = 121/164 (73.78%), Query Frame = 1
Query:    1 MLGPLTYLDAVLVAICLLSGILAMYRGLSREVLSIMSWVLAAGAGFAVVMFQHSFAEDLAKQVSGAETMPANQVLIVKIGLGIIIAIITLVAVHLVTSRISDAILESRIGLIDRVGGLAFGVVRGFAIVLPLFMFYNKFVPEKDQHT-FVTQAKSRPLLISAGK 489
            M+GPLTYLDA L+AIC LSG+LAMYRGL+RE+LSI+SW+ AAGA    V+F   FAEDLA+Q++         V I +I +G +I +I LV VHL+T+RISDAIL+SR+G++DR+ G  FGVVRGF +V+  +MFY  FVP+  Q   +V +AKS P++ S G+
Sbjct:    1 MIGPLTYLDAGLLAICFLSGLLAMYRGLTRELLSILSWLAAAGAVLYFVLFHKPFAEDLARQINAP-------VAIAQIAVGAVIFLIVLVVVHLITARISDAILDSRVGMVDRILGFLFGVVRGFVLVVIPYMFYESFVPDPQQQVPWVREAKSLPMIRSTGE 157          
BLAST of mRNA_P-wetherbeei_contig15722.1.1 vs. uniprot
Match: A0A2W4SI42_9PROT (Colicin V production protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4SI42_9PROT)

HSP 1 Score: 160 bits (404), Expect = 3.370e-46
Identity = 90/164 (54.88%), Postives = 120/164 (73.17%), Query Frame = 1
Query:    1 MLGPLTYLDAVLVAICLLSGILAMYRGLSREVLSIMSWVLAAGAGFAVVMFQHSFAEDLAKQVSGAETMPANQVLIVKIGLGIIIAIITLVAVHLVTSRISDAILESRIGLIDRVGGLAFGVVRGFAIVLPLFMFYNKFVPEKDQHT-FVTQAKSRPLLISAGK 489
            M+GPLTYLDA L+AIC LSG+LAMYRGL+RE+LSI+SW+ AA A    V+F   FAEDLA+QV+    +P   V I +I +G +I +I LV VHL+T+RISD IL+SR+G+ DR+ G  FGVVRGF +V+  +MFY  FVP+  Q   +V +AKS P++ S G+
Sbjct:    1 MIGPLTYLDAGLLAICFLSGLLAMYRGLTREILSILSWLAAAAAVLYFVLFHRPFAEDLAQQVN----VP---VAIAQIAVGAVIFLIVLVVVHLITARISDTILDSRVGMFDRILGFVFGVVRGFVLVVIPYMFYESFVPDPQQQVAWVREAKSLPMIRSTGE 157          
BLAST of mRNA_P-wetherbeei_contig15722.1.1 vs. uniprot
Match: V5SEC3_9HYPH (Colicin V production protein n=1 Tax=Hyphomicrobium nitrativorans NL23 TaxID=1029756 RepID=V5SEC3_9HYPH)

HSP 1 Score: 155 bits (391), Expect = 1.660e-44
Identity = 85/188 (45.21%), Postives = 123/188 (65.43%), Query Frame = 1
Query:    1 MLGPLTYLDAVLVAICLLSGILAMYRGLSREVLSIMSWVLAAGAGFAVVMFQHSFAEDLAKQVSGAETMPANQVLIVKIGLGIIIAIITLVAVHLVTSRISDAILESRIGLIDRVGGLAFGVVRGFAIVLPLFMFYNKFVPEKDQHT-FVTQAKSRPLLISAGKVIDPPLQYFFDRYLNKSAPGEARP 561
            M+GPLTYLDA L+A+C +S +LAMYRGL+RE+LSI+SW+ AAGA    V+     AED+A Q+         QV + +I +G II +I L+ VHL+T+RISDAIL+S +G++DR+ G  FG+ RGF +V+  +MFY  FVP++  H  +V  A S P +   G  I   L+ +    L ++ P +A+P
Sbjct:    1 MIGPLTYLDAALIAVCFISALLAMYRGLTRELLSILSWIAAAGATLYFVLSHKQIAEDMAAQMG-------TQVAVAQIAIGAIIFLIVLIVVHLITARISDAILDSSVGMVDRILGFLFGLARGFLLVVIPYMFYASFVPDEQNHLPWVRDAISTPYIKGTGNSIRAALETYMPTSLPQAQPEQAQP 181          
BLAST of mRNA_P-wetherbeei_contig15722.1.1 vs. uniprot
Match: UPI000931007A (CvpA family protein n=2 Tax=Hyphomicrobium TaxID=81 RepID=UPI000931007A)

HSP 1 Score: 150 bits (379), Expect = 8.770e-43
Identity = 86/189 (45.50%), Postives = 122/189 (64.55%), Query Frame = 1
Query:    1 MLGPLTYLDAVLVAICLLSGILAMYRGLSREVLSIMSWVLAAGAGFAVVMFQHSFAEDLAKQVSGAETMPANQVLIVKIGLGIIIAIITLVAVHLVTSRISDAILESRIGLIDRVGGLAFGVVRGFAIVLPLFMFYNKFVPEKDQHT-FVTQAKSRPLLISAGKVIDPPLQYFFDRYLNK-SAPGEARP 561
            M+GPLTYLDA ++A+C +S ILAMYRGL+RE+LSI+SWV AAGA    V+     AED+A Q+         QV + +I +G +I +I L+ VHL+T+R+SD IL+S +G+IDR+ G  FG+ RGF +V+  +MFY  FVP++  H  +V    S P +   G VI   L+ +    L++ SAP E  P
Sbjct:    1 MIGPLTYLDAAVIAVCFISAILAMYRGLTRELLSILSWVAAAGATLYFVLNYKKVAEDMAAQLG-------TQVAVAQIAIGAVIFLIVLIIVHLITARLSDVILDSSVGMIDRILGFLFGLARGFLLVVIPYMFYASFVPDEQNHLPWVRDGLSTPYIRDTGHVIRGILETYMPTSLSQPSAPAEVEP 182          
BLAST of mRNA_P-wetherbeei_contig15722.1.1 vs. uniprot
Match: A0A2S5MY88_HYPSQ (Colicin V production protein n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A2S5MY88_HYPSQ)

HSP 1 Score: 149 bits (375), Expect = 3.740e-42
Identity = 90/188 (47.87%), Postives = 119/188 (63.30%), Query Frame = 1
Query:    1 MLGPLTYLDAVLVAICLLSGILAMYRGLSREVLSIMSWVLAAGAGFAVVMFQHSFAEDLAKQVSGAETMPANQVLIVKIGLGIIIAIITLVAVHLVTSRISDAILESRIGLIDRVGGLAFGVVRGFAIVLPLFMFYNKFVPEK-DQHTFVTQAKSRPLLISAGKVIDPPLQYFFDRYLNKSAPGEARP 561
            M+GPLTYLDA L+A+ L+SG+LAMYRGL+RE+LSI+SW +AA A    V+    FAEDLA Q+         QV I +I +G +I +I L+ VHLVTSRISD IL+S +G+IDRV G  FGVVRGF +V+  +MFY  F+P+  +Q  +V  + S P + S G  I   L+      L    P    P
Sbjct:    1 MIGPLTYLDAALIAVALISGLLAMYRGLTRELLSIVSWAVAALAVLYFVLNYKKFAEDLAAQMG-------TQVAIAQIAIGAVIFLIVLIIVHLVTSRISDIILDSSVGMIDRVLGFLFGVVRGFILVVIPYMFYESFIPDPANQQPWVRDSASLPYIKSTGDSIRSILETHMPSSLTNPQPAPPSP 181          
BLAST of mRNA_P-wetherbeei_contig15722.1.1 vs. uniprot
Match: A0A109BDH7_HYPSL (Colicin V production protein n=2 Tax=Hyphomicrobium sulfonivorans TaxID=121290 RepID=A0A109BDH7_HYPSL)

HSP 1 Score: 149 bits (377), Expect = 4.870e-42
Identity = 84/190 (44.21%), Postives = 125/190 (65.79%), Query Frame = 1
Query:    1 MLGPLTYLDAVLVAICLLSGILAMYRGLSREVLSIMSWVLAAGAGFAVVMFQHSFAEDLAKQVSGAETMPANQVLIVKIGLGIIIAIITLVAVHLVTSRISDAILESRIGLIDRVGGLAFGVVRGFAIVLPLFMFYNKFVPEKDQH-TFVTQAKSRPLLISAGKVIDPPLQYFFDRYLNKSA--PGEARP 561
            MLGP+TYLDA ++A+C +SG+LAMYRG SRE+LSI+SW +AA A    V+F   FA+D+A Q+          V + +I +G +I +I L+ VHL+T+R+SD IL+SR+G++DRV G  FGV RGF +++  +MFY  F P+++QH  +V +A + P + S G  I    +Y  + Y+  S   PG  +P
Sbjct:    1 MLGPITYLDAAVLAVCFISGLLAMYRGFSREMLSIISWAVAAAAVLYFVLFHKPFAQDMAAQMG-------TPVAVAQIVVGAVIFLIVLIVVHLLTARLSDTILDSRVGMVDRVLGFLFGVARGFILIVIPYMFYEAFFPDREQHFPWVKEAVTLPYIQSTGNSI----RYVLEAYMPSSLTNPGGDQP 179          
BLAST of mRNA_P-wetherbeei_contig15722.1.1 vs. uniprot
Match: UPI0019B7B5C8 (CvpA family protein n=2 Tax=Hyphomicrobium sp. TaxID=82 RepID=UPI0019B7B5C8)

HSP 1 Score: 149 bits (377), Expect = 4.870e-42
Identity = 84/190 (44.21%), Postives = 124/190 (65.26%), Query Frame = 1
Query:    1 MLGPLTYLDAVLVAICLLSGILAMYRGLSREVLSIMSWVLAAGAGFAVVMFQHSFAEDLAKQVSGAETMPANQVLIVKIGLGIIIAIITLVAVHLVTSRISDAILESRIGLIDRVGGLAFGVVRGFAIVLPLFMFYNKFVPEKDQH-TFVTQAKSRPLLISAGKVIDPPLQYFFDRYLNKS--APGEARP 561
            MLGP+TYLDA L+A+C +SG+LAMYRG +RE+LSI+SW +AAGA    V+F   FA+D+A Q+         QV + +I +G ++ +     VHL+T+R+SDAIL+SRIG+IDR+ G  FGV RGF +++  +MFY  F P ++QH  +V +AK+ P +   G  I    ++  + Y+  S  AP +  P
Sbjct:    1 MLGPITYLDAALIAVCFISGLLAMYRGFAREMLSIVSWAIAAGAVLYFVVFHKPFAQDMAAQMG-------TQVAVAQIVVGAVLFLXXXXVVHLITARLSDAILDSRIGMIDRILGFIFGVARGFVLIVIPYMFYEAFFPNQEQHFPWVREAKTLPYIKGTGDSI----RFVLESYMPSSLTAPPDETP 179          
BLAST of mRNA_P-wetherbeei_contig15722.1.1 vs. uniprot
Match: A0A1E4CV38_9HYPH (Colicin V production protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1E4CV38_9HYPH)

HSP 1 Score: 139 bits (350), Expect = 1.810e-38
Identity = 81/163 (49.69%), Postives = 114/163 (69.94%), Query Frame = 1
Query:    1 MLGPLTYLDAVLVAICLLSGILAMYRGLSREVLSIMSWVLAAGAGFAVVMFQHSFAEDLAKQVSGAETMPANQVLIVKIGLGIIIAIITLVAVHLVTSRISDAILESRIGLIDRVGGLAFGVVRGFAIVLPLFMFYNKFVPEKDQH-TFVTQAKSRPLLISAG 486
            MLGPLTYLDA ++AI L+SG+LAMYRG +REVLSI+SW+ AA A    V++    AE +A+Q       PA    + ++ +G II +I L+ VHLVTSR+SD IL+SR+G+IDR+ G  FGVVRGF +V+  +MFY  FVP++ Q  ++V ++ S P + + G
Sbjct:    1 MLGPLTYLDAAVIAIGLISGLLAMYRGFTREVLSIISWIAAAAAVLYFVLYHKPMAEQIAQQFHAP---PA----VAQVVVGGIIFLIVLIIVHLVTSRLSDTILDSRVGMIDRLLGFLFGVVRGFILVVIPYMFYESFVPDQQQQPSWVKESISLPYIQATG 156          
BLAST of mRNA_P-wetherbeei_contig15722.1.1 vs. uniprot
Match: UPI000930A23F (CvpA family protein n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI000930A23F)

HSP 1 Score: 139 bits (349), Expect = 7.960e-38
Identity = 84/191 (43.98%), Postives = 120/191 (62.83%), Query Frame = 1
Query:    1 MLGPLTYLDAVLVAICLLSGILAMYRGLSREVLSIMSWVLAAGAGFAVVMFQHSFAEDLAKQVSGAETMPANQVLIVKIGLGIIIAIITLVAVHLVTSRISDAILESRIGLIDRVGGLAFGVVRGFAIVLPLFMFYNKFVPEKD-QHTFVTQAKSRPLLISAGKVIDPPLQYFFDRYLNKSA---PGEARP 561
            MLGP+TYLDA L+A+C +SG+LAMYRG +RE+LSI+SW +AA A    V+F   FA+D+A+Q+         +V + +I +G           HL+T+R+SDAIL+SR+G+IDRV G  FGVVRGF +V+  FMFY  F P+ + Q  +V ++K+ P +   G  I    +Y  + Y+  S    PGE  P
Sbjct:    1 MLGPITYLDAALLAVCFISGLLAMYRGFAREMLSIISWAVAAAAVLYFVIFHKPFAQDMAQQMG-------TKVPVAQIVVGAXXXXXXXXXXHLITARLSDAILDSRVGMIDRVLGFLFGVVRGFILVVIPFMFYEAFFPDPNTQVPWVKESKTLPYIKGVGDSI----RYVLEAYMPSSLTAPPGEQPP 180          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15722.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4XRZ7_9HYPH1.420e-5153.51CvpA family protein n=1 Tax=Hyphomicrobiales bacte... [more]
A0A2W4LFU3_9PROT7.340e-4854.88Colicin V production protein n=1 Tax=Proteobacteri... [more]
A0A2W4SI42_9PROT3.370e-4654.88Colicin V production protein n=1 Tax=Proteobacteri... [more]
V5SEC3_9HYPH1.660e-4445.21Colicin V production protein n=1 Tax=Hyphomicrobiu... [more]
UPI000931007A8.770e-4345.50CvpA family protein n=2 Tax=Hyphomicrobium TaxID=8... [more]
A0A2S5MY88_HYPSQ3.740e-4247.87Colicin V production protein n=2 Tax=unclassified ... [more]
A0A109BDH7_HYPSL4.870e-4244.21Colicin V production protein n=2 Tax=Hyphomicrobiu... [more]
UPI0019B7B5C84.870e-4244.21CvpA family protein n=2 Tax=Hyphomicrobium sp. Tax... [more]
A0A1E4CV38_9HYPH1.810e-3849.69Colicin V production protein n=2 Tax=Alphaproteoba... [more]
UPI000930A23F7.960e-3843.98CvpA family protein n=1 Tax=Hyphomicrobium sp. NDB... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15722contigP-wetherbeei_contig15722:297..863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1267005.KB911258_gene588
Preferred namecvpA
PFAMsColicin_V
Model size567
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03558
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.55e-42
EggNOG OGsCOG1286@1|root,COG1286@2|Bacteria,1NF4G@1224|Proteobacteria,2TUVR@28211|Alphaproteobacteria,3N7BD@45401|Hyphomicrobiaceae
DescriptionColicin V production protein
Cds size567
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186065.3752537-CDS-P-wetherbeei_contig15722:296..8631683186065.3752537-CDS-P-wetherbeei_contig15722:296..863Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15722 297..863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15722.1.1prot_P-wetherbeei_contig15722.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15722 297..863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15722.1.1

>prot_P-wetherbeei_contig15722.1.1 ID=prot_P-wetherbeei_contig15722.1.1|Name=mRNA_P-wetherbeei_contig15722.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=189bp
MLGPLTYLDAVLVAICLLSGILAMYRGLSREVLSIMSWVLAAGAGFAVVM
FQHSFAEDLAKQVSGAETMPANQVLIVKIGLGIIIAIITLVAVHLVTSRI
SDAILESRIGLIDRVGGLAFGVVRGFAIVLPLFMFYNKFVPEKDQHTFVT
QAKSRPLLISAGKVIDPPLQYFFDRYLNKSAPGEARPG*
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mRNA from alignment at P-wetherbeei_contig15722:297..863+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15722.1.1 ID=mRNA_P-wetherbeei_contig15722.1.1|Name=mRNA_P-wetherbeei_contig15722.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig15722:297..863+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGGGCCACTGACCTATCTGGACGCCGTCCTGGTCGCGATCTGCCT GCTATCCGGCATTCTGGCGATGTATCGCGGCTTGTCGCGCGAAGTCCTGT CGATCATGTCGTGGGTGCTGGCGGCCGGGGCAGGCTTCGCCGTGGTGATG TTCCAGCACAGCTTCGCGGAGGATCTCGCCAAGCAGGTCTCCGGGGCGGA GACGATGCCGGCCAATCAGGTGCTGATCGTGAAGATCGGGCTCGGCATCA TCATCGCCATCATTACCCTGGTGGCCGTGCATCTGGTCACCTCGAGGATA TCGGATGCGATCCTGGAGAGCCGCATCGGCCTCATCGATCGCGTCGGCGG ACTGGCTTTCGGCGTCGTCCGGGGCTTTGCGATCGTGCTGCCGCTGTTCA TGTTCTACAACAAGTTCGTGCCGGAGAAGGATCAGCACACCTTCGTCACC CAGGCGAAGTCCCGCCCGCTGCTGATCAGCGCGGGCAAGGTGATCGACCC GCCGCTGCAGTACTTCTTCGACCGCTACCTGAATAAAAGTGCGCCGGGAG AGGCCCGGCCAGGATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15722:297..863+

>mRNA_P-wetherbeei_contig15722.1.1 ID=mRNA_P-wetherbeei_contig15722.1.1|Name=mRNA_P-wetherbeei_contig15722.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig15722:297..863+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGGGCCACTGACCTATCTGGACGCCGTCCTGGTCGCGATCTGCCT
GCTATCCGGCATTCTGGCGATGTATCGCGGCTTGTCGCGCGAAGTCCTGT
CGATCATGTCGTGGGTGCTGGCGGCCGGGGCAGGCTTCGCCGTGGTGATG
TTCCAGCACAGCTTCGCGGAGGATCTCGCCAAGCAGGTCTCCGGGGCGGA
GACGATGCCGGCCAATCAGGTGCTGATCGTGAAGATCGGGCTCGGCATCA
TCATCGCCATCATTACCCTGGTGGCCGTGCATCTGGTCACCTCGAGGATA
TCGGATGCGATCCTGGAGAGCCGCATCGGCCTCATCGATCGCGTCGGCGG
ACTGGCTTTCGGCGTCGTCCGGGGCTTTGCGATCGTGCTGCCGCTGTTCA
TGTTCTACAACAAGTTCGTGCCGGAGAAGGATCAGCACACCTTCGTCACC
CAGGCGAAGTCCCGCCCGCTGCTGATCAGCGCGGGCAAGGTGATCGACCC
GCCGCTGCAGTACTTCTTCGACCGCTACCTGAATAAAAGTGCGCCGGGAG
AGGCCCGGCCAGGATAA
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