mRNA_P-wetherbeei_contig1571.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1571.1.1
Unique NamemRNA_P-wetherbeei_contig1571.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1571.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1571contigP-wetherbeei_contig1571:5..2611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2046
Hectar predicted targeting categorysignal peptide
Exons4
Cds size1026
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186064.8945448-CDS-P-wetherbeei_contig1571:4..1221683186064.8945448-CDS-P-wetherbeei_contig1571:4..122Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1571 5..122 -
1683186064.9047554-CDS-P-wetherbeei_contig1571:206..11141683186064.9047554-CDS-P-wetherbeei_contig1571:206..1114Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1571 207..1114 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186064.9135835-UTR-P-wetherbeei_contig1571:1114..15601683186064.9135835-UTR-P-wetherbeei_contig1571:1114..1560Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1571 1115..1560 -
1683186064.9232717-UTR-P-wetherbeei_contig1571:1787..19981683186064.9232717-UTR-P-wetherbeei_contig1571:1787..1998Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1571 1788..1998 -
1683186064.9334438-UTR-P-wetherbeei_contig1571:2248..26111683186064.9334438-UTR-P-wetherbeei_contig1571:2248..2611Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1571 2249..2611 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1571.1.1prot_P-wetherbeei_contig1571.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1571 5..1114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1571.1.1

>prot_P-wetherbeei_contig1571.1.1 ID=prot_P-wetherbeei_contig1571.1.1|Name=mRNA_P-wetherbeei_contig1571.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=342bp
MIFHPAAAESLVVAAGTGVLARFLLPWLLLCRHRRLPAQKSVARPCFVRG
KPAVSLSLLPACPVNRTGRPRAKPPRCARPGRARVHGRNRAPRRHENHHA
RGTGLIGALRRAAPGAACGLPGPTQPLGGPHTDQPACVGNSRAKPPAWKT
TAGAIASVLHAPLSAPTSVTWVQSVLQWFTLHGLQAWGAGNRLFRSLPES
CYSLSIPFFSFGRINFFRSAAKSSNRIWIFLCLPRLCDMHWNNCANEREL
LCPIKKIVFSSSPSCLSQPASQSLHAGGTPPSVRPHIRAVPHENDQLWTI
IQNWWAGRGRGRAGWRDGRENTDAPSVGVGRTARHCGMRALL
back to top

mRNA from alignment at P-wetherbeei_contig1571:5..2611-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1571.1.1 ID=mRNA_P-wetherbeei_contig1571.1.1|Name=mRNA_P-wetherbeei_contig1571.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2607bp|location=Sequence derived from alignment at P-wetherbeei_contig1571:5..2611- (Phaeothamnion wetherbeei SAG_119_79)
CGATGTTAACCGGTTAGCGCTTGTTTCTTCAGTTTTTAGAATGGGGAGGC
AGGTTGTAGTCCTTCGCGCGGAACTTTCTGTCTTTCTCCCCGACCTTCTC
AGTCGCGGAGCGCTTTGGCGTGCCCACAGCGGGGATCCTCGACCCCATCG
GCAACTTTGTCGTCTGCACGACACTCGAGTTGGAGCACAGCGAGCAGCAG
CGGCAGATGAAGCAGACGATTGAATCGTTCTTATCAGGGCAGCAACGGGA
GCGCGGCGCATCGGGTCTGGAGAAGCTCCTTGCCGCGGCGGAGCAGCAGC
GGAAGGACGCCAATCGCACACTGGCGGAGCTCGAAAAGGAGCGGCGCGGG
AGGAAGCACAGGGGTACGTCATGTGGCAATCTCCGCAGTTCATGTGGTAG
TTTTGCGTCGATTTTCTCACGTTCTCCGTCGTTATCGCGGCGTATGGAAA
GTTTCGATGTTACACGGATTCTGTTGATGCCCGTGGCGGGCTGGGCTGGC
TTGCCATCATGTAGCCCGTGGGTGGACTGGCTTGCCATCATACGGGAAAC
GTTATGAGGTAATGCCCAGCCTCTTGCTAAACAAATGTCCCGGGATTCAT
CCCGTCTACCCAGCCTCCCATCCCAGGAGATGTGACGGGGAAGGTGTATC
GGGTCCGCGGCGACGACGAGATTTCGGAAGCCATCAACAAGAGGCAGCGG
CGGGAGCTTCAGCGGGCGGAGGAGCGGGGCGGCGGGGCATGGCACCATGC
CACCATCCCGGAGGGGTGCACAACCGAGAACGCCTGGTCCGCGGCCAACT
TTACCGCTGGCGCGTCAGAGCGGGGTGAGCACGGTGCTGAGATTTCATGC
TGACCCTTGATGCGGCTTCCTTGCGGCGATAAGACGCGATGCAGCAGAGG
GAGATGCGGCGAATAGTCCTTGGTCCGCTGTGCGTCTCTTGGGATCCTGC
TGCTGATTGGTGGTTCGCCGTTTTCCGCTTCTTTGGCGGTGTGCAGACGT
CGCCGCCGCCGCCATTCCTACCTTGTTCCGCCTGCAATGCGTCCCCCGCA
GCGGCAGCGAGCCGCGGCATCCCCATCCTGTAGCGGGGTGAGAAGGCGCC
GCGGAGGGCATCCAGGCATTTCATCTGACCGTCTCAGGCGACGGCGCGGG
TCGTCTTCACTTGCTCGCGGGGCACCGCCGTGGGTGAGGCAGTCTCCATC
ACGGCCGTGCTCGACTACTCGAAGCCGGACCGCCAGGCGAACAAGATCTT
CCGCCCTCTGACAGAGACAGCAACGCCGCGATGTCCGCCCTCGATGGAGC
CGCCCGCAGCTGCACGTGCGGGTGCGGCGGCCGCGCCGTGGAGGCGGCGG
CCACGGTTCCGGTGTAGGATAATTTGTGATTGGCCCGGTAAGCGCGCGTA
CATTCTGCTAGATTCGATCGATCCGTGAGCATTTGCTAGGTCTTTTGGAG
TTCTCTGCAAAACTCTTCTTTGAGGCGAGTAGCGACAGCCATGGCGCATG
ATTTTCCATCCGGCAGCGGCTGAATCCTTGGTAGTTGCTGCCGGAACAGG
CGTGCTCGCGAGGTTTCTTTTGCCTTGGCTGCTTCTTTGTCGGCACCGAC
GGCTGCCAGCTCAAAAGTCTGTGGCGCGGCCCTGCTTTGTGAGGGGAAAG
CCCGCTGTTTCTCTTTCCTTGCTTCCCGCCTGCCCAGTCAATCGGACAGG
ACGCCCTAGAGCGAAACCTCCGCGATGTGCTCGTCCAGGTCGCGCTCGAG
TACATGGACGAAACAGGGCGCCCCGTCGACATGAAAACCATCACGCCCGC
GGCACTGGACTTATTGGAGCGCTGAGGCGGGCGGCACCTGGAGCAGCTTG
TGGTCTACCTGGGCCAACACAACCACTAGGAGGCCCGCATACAGACCAAC
CGGCCTGCGTCGGCAACTCTAGGGCGAAGCCGCCGGCATGGAAGACGACG
GCAGGGGCCATCGCCTCGGTCCTGCACGCCCCGCTGAGCGCTCCCACCTC
GGTGACCTGGGTTCAAAGCGTGCTGCAATGGTTTACTTTGCATGGTTTGC
AAGCCTGGGGCGCAGGAAACCGGCTTTTCCGGTCATTGCCCGAATCTTGT
TATTCACTGTCAATCCCCTTCTTCTCCTTTGGAAGGATCAATTTCTTTCG
ATCTGCCGCCAAATCATCAAACCGGATTTGGATTTTTCTTTGCCTGCCGC
GTCTGTGTGATATGCACTGGAATAATTGTGCGAACGAGAGAGAACTTCTT
TGTCCCATTAAAAAAATCGTTTTCTCATCTTCTCCCTCTTGTCTTTCGCA
ACCTGCCTCCCAATCACTTCACGCTGGTGGCACCCCACCAAGTGTGCGCC
CGCATATACGAGCAGTACCTCACGAAAACGACCAACTCTGGACTATTATC
CAGAAGCCGTGAGCTCGTGGAGGTCATGGCTGGCGGCGCCGAACGCATTT
GATGGCGCTGCTATGGCCATGGGGCCGGAATCGCGTCTTCTGGTGGGCGG
GCCGTGGCCGGGGGCGTGCGGGTTGGCGTGACGGGCGGGAGAATACCGAC
GCCCCGTCCGTAGGAGTTGGGAGAACCGCGAGGCACTGTGGCATGCGCGC
TTTGCTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1571:5..2611-

>mRNA_P-wetherbeei_contig1571.1.1 ID=mRNA_P-wetherbeei_contig1571.1.1|Name=mRNA_P-wetherbeei_contig1571.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1026bp|location=Sequence derived from alignment at P-wetherbeei_contig1571:5..2611- (Phaeothamnion wetherbeei SAG_119_79)
ATGATTTTCCATCCGGCAGCGGCTGAATCCTTGGTAGTTGCTGCCGGAAC
AGGCGTGCTCGCGAGGTTTCTTTTGCCTTGGCTGCTTCTTTGTCGGCACC
GACGGCTGCCAGCTCAAAAGTCTGTGGCGCGGCCCTGCTTTGTGAGGGGA
AAGCCCGCTGTTTCTCTTTCCTTGCTTCCCGCCTGCCCAGTCAATCGGAC
AGGACGCCCTAGAGCGAAACCTCCGCGATGTGCTCGTCCAGGTCGCGCTC
GAGTACATGGACGAAACAGGGCGCCCCGTCGACATGAAAACCATCACGCC
CGCGGCACTGGACTTATTGGAGCGCTGAGGCGGGCGGCACCTGGAGCAGC
TTGTGGTCTACCTGGGCCAACACAACCACTAGGAGGCCCGCATACAGACC
AACCGGCCTGCGTCGGCAACTCTAGGGCGAAGCCGCCGGCATGGAAGACG
ACGGCAGGGGCCATCGCCTCGGTCCTGCACGCCCCGCTGAGCGCTCCCAC
CTCGGTGACCTGGGTTCAAAGCGTGCTGCAATGGTTTACTTTGCATGGTT
TGCAAGCCTGGGGCGCAGGAAACCGGCTTTTCCGGTCATTGCCCGAATCT
TGTTATTCACTGTCAATCCCCTTCTTCTCCTTTGGAAGGATCAATTTCTT
TCGATCTGCCGCCAAATCATCAAACCGGATTTGGATTTTTCTTTGCCTGC
CGCGTCTGTGTGATATGCACTGGAATAATTGTGCGAACGAGAGAGAACTT
CTTTGTCCCATTAAAAAAATCGTTTTCTCATCTTCTCCCTCTTGTCTTTC
GCAACCTGCCTCCCAATCACTTCACGCTGGTGGCACCCCACCAAGTGTGC
GCCCGCATATACGAGCAGTACCTCACGAAAACGACCAACTCTGGACTATT
ATCCAGAACTGGTGGGCGGGCCGTGGCCGGGGGCGTGCGGGTTGGCGTGA
CGGGCGGGAGAATACCGACGCCCCGTCCGTAGGAGTTGGGAGAACCGCGA
GGCACTGTGGCATGCGCGCTTTGCTG
back to top