mRNA_P-wetherbeei_contig15707.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15707.2.1
Unique NamemRNA_P-wetherbeei_contig15707.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15707.2.1 vs. uniprot
Match: A0A7X9AGJ8_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AGJ8_9BURK)

HSP 1 Score: 159 bits (403), Expect = 2.660e-43
Identity = 102/227 (44.93%), Postives = 131/227 (57.71%), Query Frame = 1 
Query:   10 MTSEPILTHFEPPEDCDGEAYDKAVEAWLKIKDEDEREAFYRTEVFPRSCSRLRAQAED-DIADLLFVPIGTQSYAPILACIANPAQVIVLLHSESSYPYAQLVEATLASEGHQ--FKLVRIQELDVADIAEKMQSCYDSLGQPEREGVICDQTGGTKVMTAAVAGVAAVNGWTQTYIASTFIQKGG-SHHESRVVLDNLFDKMGGWHRGMAWRLASLGQFEAGADA 678
            M S+P+ TH     D D + YD AV  WL ++   E  AFYR  VFP +C R R   +  +  DLL+VP+GTQ +AP LA +AN A  + LL + +S PY Q VEA LA+   +  F  VR+ E  VADIA  ++  +D+   P    V  D TGGTKVMTAA+AGV  + GW   YI+STF +K G SHHE  V+LDN+ D  G   R  A  L S G   A  +A
Sbjct:    1 MMSDPLPTHATWEGDLD-QVYDSAVAEWLGMEPGLEAAAFYRQRVFPLTCERFRRDRDGVEPLDLLYVPVGTQPFAPTLAALANSAACVALLETSASAPYGQEVEAALAAGSPETVFLHVRVHETAVADIALAIRDIFDTRALPSGSKVGADTTGGTKVMTAAMAGVGNLYGWRLFYISSTFERKFGFSHHEHLVLLDNVLDVFGARRREEALALLSAGACAAAEEA 226
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15707.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X9AGJ8_9BURK2.660e-4344.93Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15707contigP-wetherbeei_contig15707:297..1031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size735
Hectar predicted targeting categoryother localisation
Exons1
Cds size726
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186064.853585-UTR-P-wetherbeei_contig15707:296..3051683186064.853585-UTR-P-wetherbeei_contig15707:296..305Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15707 297..305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186064.8668237-CDS-P-wetherbeei_contig15707:305..10311683186064.8668237-CDS-P-wetherbeei_contig15707:305..1031Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15707 306..1031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15707.2.1prot_P-wetherbeei_contig15707.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15707 306..1031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15707.2.1

>prot_P-wetherbeei_contig15707.2.1 ID=prot_P-wetherbeei_contig15707.2.1|Name=mRNA_P-wetherbeei_contig15707.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=242bp
MTSEPILTHFEPPEDCDGEAYDKAVEAWLKIKDEDEREAFYRTEVFPRSC
SRLRAQAEDDIADLLFVPIGTQSYAPILACIANPAQVIVLLHSESSYPYA
QLVEATLASEGHQFKLVRIQELDVADIAEKMQSCYDSLGQPEREGVICDQ
TGGTKVMTAAVAGVAAVNGWTQTYIASTFIQKGGSHHESRVVLDNLFDKM
GGWHRGMAWRLASLGQFEAGADALRKAAEESLASRMDRVWIE
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mRNA from alignment at P-wetherbeei_contig15707:297..1031+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15707.2.1 ID=mRNA_P-wetherbeei_contig15707.2.1|Name=mRNA_P-wetherbeei_contig15707.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=735bp|location=Sequence derived from alignment at P-wetherbeei_contig15707:297..1031+ (Phaeothamnion wetherbeei SAG_119_79)
ACCGGGCAGATGACATCCGAACCTATTCTCACCCACTTCGAACCTCCGGA
AGACTGCGATGGCGAGGCCTACGACAAGGCCGTGGAGGCCTGGCTCAAAA
TCAAGGATGAAGACGAGCGAGAGGCGTTTTATCGCACCGAGGTCTTTCCC
CGCAGCTGTTCTCGTCTGAGAGCTCAAGCGGAGGACGACATCGCCGACTT
GTTGTTCGTCCCTATCGGAACCCAGAGCTATGCCCCAATTCTTGCGTGCA
TCGCAAATCCGGCTCAGGTTATTGTGCTTTTGCATTCGGAGAGTTCCTAT
CCCTATGCGCAACTCGTCGAGGCGACACTGGCAAGTGAGGGGCATCAGTT
CAAACTCGTGCGAATCCAGGAACTGGATGTGGCAGATATCGCCGAAAAGA
TGCAGTCTTGCTACGACAGCCTGGGTCAACCCGAACGGGAGGGAGTCATT
TGCGACCAGACGGGCGGCACCAAGGTAATGACAGCGGCCGTAGCGGGTGT
TGCCGCCGTCAACGGTTGGACGCAGACGTATATCGCCAGCACGTTTATTC
AAAAAGGCGGTTCGCATCACGAGTCGCGAGTCGTTCTCGACAATCTCTTC
GACAAGATGGGAGGCTGGCATCGCGGAATGGCCTGGCGGTTGGCTTCCCT
GGGTCAGTTTGAGGCGGGCGCCGACGCGCTGCGCAAAGCTGCCGAGGAGT
CTCTGGCCAGTCGTATGGATCGCGTGTGGATCGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15707:297..1031+

>mRNA_P-wetherbeei_contig15707.2.1 ID=mRNA_P-wetherbeei_contig15707.2.1|Name=mRNA_P-wetherbeei_contig15707.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=726bp|location=Sequence derived from alignment at P-wetherbeei_contig15707:297..1031+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACATCCGAACCTATTCTCACCCACTTCGAACCTCCGGAAGACTGCGA
TGGCGAGGCCTACGACAAGGCCGTGGAGGCCTGGCTCAAAATCAAGGATG
AAGACGAGCGAGAGGCGTTTTATCGCACCGAGGTCTTTCCCCGCAGCTGT
TCTCGTCTGAGAGCTCAAGCGGAGGACGACATCGCCGACTTGTTGTTCGT
CCCTATCGGAACCCAGAGCTATGCCCCAATTCTTGCGTGCATCGCAAATC
CGGCTCAGGTTATTGTGCTTTTGCATTCGGAGAGTTCCTATCCCTATGCG
CAACTCGTCGAGGCGACACTGGCAAGTGAGGGGCATCAGTTCAAACTCGT
GCGAATCCAGGAACTGGATGTGGCAGATATCGCCGAAAAGATGCAGTCTT
GCTACGACAGCCTGGGTCAACCCGAACGGGAGGGAGTCATTTGCGACCAG
ACGGGCGGCACCAAGGTAATGACAGCGGCCGTAGCGGGTGTTGCCGCCGT
CAACGGTTGGACGCAGACGTATATCGCCAGCACGTTTATTCAAAAAGGCG
GTTCGCATCACGAGTCGCGAGTCGTTCTCGACAATCTCTTCGACAAGATG
GGAGGCTGGCATCGCGGAATGGCCTGGCGGTTGGCTTCCCTGGGTCAGTT
TGAGGCGGGCGCCGACGCGCTGCGCAAAGCTGCCGAGGAGTCTCTGGCCA
GTCGTATGGATCGCGTGTGGATCGAA
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