mRNA_P-wetherbeei_contig1568.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1568.1.1
Unique NamemRNA_P-wetherbeei_contig1568.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1568.1.1 vs. uniprot
Match: D8LNT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNT6_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 8.450e-8
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 SIVLGYFYPALASAKAAVQEDTDASTVWITYWLV 102
            S++LGYFYPALASAK AVQ+D  A T W+TYW+V
Sbjct:   12 SVLLGYFYPALASAKTAVQQDPAAFTQWMTYWVV 45
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1568.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNT6_ECTSI8.450e-870.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1568contigP-wetherbeei_contig1568:174..275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LNT6
PFAMsTB2_DP1_HVA22
Model size102
Max annot lvl2759|Eukaryota
KEGG koko:K17279
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.38e-08
EggNOG OGsCOG5052@1|root,KOG1726@2759|Eukaryota
Descriptionmitotic nuclear envelope reassembly
Cds size102
COG categoryU
BRITEko00000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186063.8723226-CDS-P-wetherbeei_contig1568:173..2751683186063.8723226-CDS-P-wetherbeei_contig1568:173..275Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1568 174..275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1568.1.1prot_P-wetherbeei_contig1568.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1568 174..275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1568.1.1

>prot_P-wetherbeei_contig1568.1.1 ID=prot_P-wetherbeei_contig1568.1.1|Name=mRNA_P-wetherbeei_contig1568.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=34bp
SIVLGYFYPALASAKAAVQEDTDASTVWITYWLV
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mRNA from alignment at P-wetherbeei_contig1568:174..275-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1568.1.1 ID=mRNA_P-wetherbeei_contig1568.1.1|Name=mRNA_P-wetherbeei_contig1568.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=102bp|location=Sequence derived from alignment at P-wetherbeei_contig1568:174..275- (Phaeothamnion wetherbeei SAG_119_79)
AGCATCGTACTGGGTTACTTTTACCCGGCTCTGGCGTCGGCCAAAGCGGC
AGTCCAAGAAGACACTGACGCCAGCACGGTCTGGATCACCTATTGGTTAG
TG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1568:174..275-

>mRNA_P-wetherbeei_contig1568.1.1 ID=mRNA_P-wetherbeei_contig1568.1.1|Name=mRNA_P-wetherbeei_contig1568.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=102bp|location=Sequence derived from alignment at P-wetherbeei_contig1568:174..275- (Phaeothamnion wetherbeei SAG_119_79)
AGCATCGTACTGGGTTACTTTTACCCGGCTCTGGCGTCGGCCAAAGCGGC
AGTCCAAGAAGACACTGACGCCAGCACGGTCTGGATCACCTATTGGTTAG
TG
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