mRNA_P-wetherbeei_contig15592.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15592.2.1
Unique NamemRNA_P-wetherbeei_contig15592.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15592.2.1 vs. uniprot
Match: A0A6P7M676_BETSP (cytoplasmic dynein 2 intermediate chain 1 isoform X1 n=2 Tax=Betta splendens TaxID=158456 RepID=A0A6P7M676_BETSP)

HSP 1 Score: 59.7 bits (143), Expect = 5.640e-8
Identity = 34/109 (31.19%), Postives = 54/109 (49.54%), Query Frame = 1 
Query:   25 VLCVAFHPRCPGHFLAGADDGTIRLYRVAHARPLTTWILASIAGPPSAAAESKQQQGRRAWRGMSAVPPAVTALRWSPTRPAVFLALDAAGTVHAFDLVREETRALFSE 351
            +  + F P     FL G  DG++RL+ V++ +P+T W  ++ A P                         V  L+W+ TRP VF  LDAA T+H +DL+++ET  + +E
Sbjct:  910 ITAIQFSPFNHNMFLVGCGDGSVRLHGVSYEQPVTEWKSSTAAEP-------------------------VLLLQWAQTRPTVFCVLDAASTLHIWDLLKDETEPVVTE 993
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BLAST of mRNA_P-wetherbeei_contig15592.2.1 vs. uniprot
Match: UPI001B3B12F1 (cytoplasmic dynein 2 intermediate chain 1 isoform X1 n=2 Tax=Toxotes jaculatrix TaxID=941984 RepID=UPI001B3B12F1)

HSP 1 Score: 58.9 bits (141), Expect = 1.050e-7
Identity = 36/104 (34.62%), Postives = 52/104 (50.00%), Query Frame = 1 
Query:   40 FHPRCPGHFLAGADDGTIRLYRVAHARPLTTWILASIAGPPSAAAESKQQQGRRAWRGMSAVPPAVTALRWSPTRPAVFLALDAAGTVHAFDLVREETRALFSE 351
            F P     FL G  DG+IRL+ V+H +P+  W   S +G P                        V +L+W+ TRPAVF  LDAA +VH +DL++ +T  + +E
Sbjct:  979 FSPFRQNLFLVGCGDGSIRLHAVSHEQPVAEWKN-STSGEP------------------------VVSLQWAQTRPAVFCVLDAASSVHVWDLLKNDTEPVVTE 1057
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BLAST of mRNA_P-wetherbeei_contig15592.2.1 vs. uniprot
Match: A0A8C3GB50_CYCLU (WD repeat domain 60 n=6 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C3GB50_CYCLU)

HSP 1 Score: 55.8 bits (133), Expect = 1.250e-6
Identity = 35/109 (32.11%), Postives = 51/109 (46.79%), Query Frame = 1 
Query:   25 VLCVAFHPRCPGHFLAGADDGTIRLYRVAHARPLTTWILASIAGPPSAAAESKQQQGRRAWRGMSAVPPAVTALRWSPTRPAVFLALDAAGTVHAFDLVREETRALFSE 351
            V  + F P     FL G  DG+IRL+ V+H  P+  W  + +AG P                        V +L+W  TRP VF  LDAA T+H +DL++ +   + +E
Sbjct:  854 VTSIHFSPFRQHLFLVGCGDGSIRLHEVSHEHPVAQWS-SGMAGDP------------------------VVSLQWVQTRPTVFCVLDAASTLHIWDLLKSDAEPVVTE 937
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BLAST of mRNA_P-wetherbeei_contig15592.2.1 vs. uniprot
Match: UPI002018523B (cytoplasmic dynein 2 intermediate chain 1 isoform X6 n=1 Tax=Perognathus longimembris pacificus TaxID=214514 RepID=UPI002018523B)

HSP 1 Score: 55.1 bits (131), Expect = 2.290e-6
Identity = 35/97 (36.08%), Postives = 47/97 (48.45%), Query Frame = 1 
Query:   40 FHPRCPGHFLAGADDGTIRLYRVAHARPLTTWILASIAGPPSAAAESKQQQGRRAWRGMSAVPPAVTALRWSPTRPAVFLALDAAGTVHAFDLVREE 330
            F P     FLAG  DG+IRL+++    PL  W                  +G            A+T+L+WSPTRPAVFLA DAA  V+ +DL+  +
Sbjct:  608 FSPFGESIFLAGCSDGSIRLHQLTSEWPLAQW--------------DSSTEGS-----------AITSLQWSPTRPAVFLARDAASRVYVWDLLESD 679
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BLAST of mRNA_P-wetherbeei_contig15592.2.1 vs. uniprot
Match: UPI002019858E (cytoplasmic dynein 2 intermediate chain 1 isoform X1 n=6 Tax=Heteromyidae TaxID=10015 RepID=UPI002019858E)

HSP 1 Score: 55.1 bits (131), Expect = 2.350e-6
Identity = 35/97 (36.08%), Postives = 47/97 (48.45%), Query Frame = 1 
Query:   40 FHPRCPGHFLAGADDGTIRLYRVAHARPLTTWILASIAGPPSAAAESKQQQGRRAWRGMSAVPPAVTALRWSPTRPAVFLALDAAGTVHAFDLVREE 330
            F P     FLAG  DG+IRL+++    PL  W                  +G            A+T+L+WSPTRPAVFLA DAA  V+ +DL+  +
Sbjct:  978 FSPFGESIFLAGCSDGSIRLHQLTSEWPLAQW--------------DSSTEGS-----------AITSLQWSPTRPAVFLARDAASRVYVWDLLESD 1049
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BLAST of mRNA_P-wetherbeei_contig15592.2.1 vs. uniprot
Match: UPI0018871D78 (cytoplasmic dynein 2 intermediate chain 1 isoform X1 n=7 Tax=Pungitius pungitius TaxID=134920 RepID=UPI0018871D78)

HSP 1 Score: 54.7 bits (130), Expect = 3.200e-6
Identity = 33/96 (34.38%), Postives = 48/96 (50.00%), Query Frame = 1 
Query:   64 FLAGADDGTIRLYRVAHARPLTTWILASIAGPPSAAAESKQQQGRRAWRGMSAVPPAVTALRWSPTRPAVFLALDAAGTVHAFDLVREETRALFSE 351
            FL G  DG+IRL++V+   P+  W   + AG P                        V +LRW+ TRPAVF  LDAA T+H +DL++ +   + +E
Sbjct:  932 FLVGCGDGSIRLHQVSSEHPVAEWKNGT-AGEP------------------------VVSLRWTRTRPAVFCVLDAASTLHVWDLLKNDAEPVVTE 1002
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BLAST of mRNA_P-wetherbeei_contig15592.2.1 vs. uniprot
Match: UPI0012EE8B02 (WD repeat-containing protein 60 isoform X1 n=2 Tax=Anarrhichthys ocellatus TaxID=433405 RepID=UPI0012EE8B02)

HSP 1 Score: 54.3 bits (129), Expect = 4.360e-6
Identity = 35/109 (32.11%), Postives = 51/109 (46.79%), Query Frame = 1 
Query:   25 VLCVAFHPRCPGHFLAGADDGTIRLYRVAHARPLTTWILASIAGPPSAAAESKQQQGRRAWRGMSAVPPAVTALRWSPTRPAVFLALDAAGTVHAFDLVREETRALFSE 351
            V  + F P     FL G  DG+IRL+ V+H  P+  W   + AG P                        V +L+W+ TRP VF  LDAA T+H +DL++ +   + +E
Sbjct:  902 VTSIHFSPFRQHLFLVGCGDGSIRLHDVSHEHPVAEWKNGT-AGEP------------------------VVSLQWAQTRPTVFCVLDAASTLHIWDLLKNDAEPVVTE 985
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BLAST of mRNA_P-wetherbeei_contig15592.2.1 vs. uniprot
Match: A0A7S0WXC2_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WXC2_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 5.270e-6
Identity = 43/122 (35.25%), Postives = 52/122 (42.62%), Query Frame = 1 
Query:    4 AAVTSAA------VLCVAFHPRCPGHFLAGADDGTIRLYRVAHARPLTTWILASIAGPPSAAAESKQQQGRRAWRGMSAVPPAVTALRWSPTRPAVFLALDAAGTVHAFDLVREETRALFSE 351
            AAVT AA      V C+A  P  P  FLAG   GT+ L+  + A  +  W      G                          VT L WSPTRPA F  LDAA T+H FDL +  +  + SE
Sbjct:   29 AAVTRAAGSVPSAVTCLATSPYHPKAFLAGHGTGTVCLHSTSAAAAVLLWPELGAGG--------------------------VTGLAWSPTRPACFFVLDAACTLHHFDLTKSLSGPVASE 124
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BLAST of mRNA_P-wetherbeei_contig15592.2.1 vs. uniprot
Match: A0A8C3X2H8_9CETA (WD repeat domain 60 n=3 Tax=Catagonus wagneri TaxID=51154 RepID=A0A8C3X2H8_9CETA)

HSP 1 Score: 53.9 bits (128), Expect = 5.910e-6
Identity = 35/89 (39.33%), Postives = 44/89 (49.44%), Query Frame = 1 
Query:   64 FLAGADDGTIRLYRVAHARPLTTWILASIAGPPSAAAESKQQQGRRAWRGMSAVPPAVTALRWSPTRPAVFLALDAAGTVHAFDLVREE 330
            FLAG  DG+IRL+++A  RPL  W                   GR           AV+AL WSPTRPAVFL  D A  V+ +DL+  +
Sbjct:  834 FLAGCSDGSIRLHQLASERPLLQW--------------DSSTGGR-----------AVSALCWSPTRPAVFLVQDDASCVYVWDLLESD 897
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BLAST of mRNA_P-wetherbeei_contig15592.2.1 vs. uniprot
Match: A0A1S3GLH7_DIPOR (WD repeat-containing protein 60 n=3 Tax=Dipodomys TaxID=10016 RepID=A0A1S3GLH7_DIPOR)

HSP 1 Score: 53.1 bits (126), Expect = 1.120e-5
Identity = 33/89 (37.08%), Postives = 45/89 (50.56%), Query Frame = 1 
Query:   64 FLAGADDGTIRLYRVAHARPLTTWILASIAGPPSAAAESKQQQGRRAWRGMSAVPPAVTALRWSPTRPAVFLALDAAGTVHAFDLVREE 330
            FLAG  DG+IRL+++A   PL  W                  +G            A+ +L+WSPTRPAVFLA DAA  V+ +DL+  +
Sbjct: 1126 FLAGCSDGSIRLHQLASEWPLAQW--------------DNSTEGS-----------AICSLQWSPTRPAVFLAQDAASRVYIWDLLESD 1189
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15592.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6P7M676_BETSP5.640e-831.19cytoplasmic dynein 2 intermediate chain 1 isoform ... [more]
UPI001B3B12F11.050e-734.62cytoplasmic dynein 2 intermediate chain 1 isoform ... [more]
A0A8C3GB50_CYCLU1.250e-632.11WD repeat domain 60 n=6 Tax=Cyclopterus lumpus Tax... [more]
UPI002018523B2.290e-636.08cytoplasmic dynein 2 intermediate chain 1 isoform ... [more]
UPI002019858E2.350e-636.08cytoplasmic dynein 2 intermediate chain 1 isoform ... [more]
UPI0018871D783.200e-634.38cytoplasmic dynein 2 intermediate chain 1 isoform ... [more]
UPI0012EE8B024.360e-632.11WD repeat-containing protein 60 isoform X1 n=2 Tax... [more]
A0A7S0WXC2_9CHLO5.270e-635.25Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A8C3X2H8_9CETA5.910e-639.33WD repeat domain 60 n=3 Tax=Catagonus wagneri TaxI... [more]
A0A1S3GLH7_DIPOR1.120e-537.08WD repeat-containing protein 60 n=3 Tax=Dipodomys ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15592contigP-wetherbeei_contig15592:836..1186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FXE1
PFAMsWD40
Model size351
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.16e-17
EggNOG OGsKOG1587@1|root,KOG1587@2759|Eukaryota
Descriptiondynein heavy chain binding
Cds size351
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186061.2931888-CDS-P-wetherbeei_contig15592:835..11861683186061.2931888-CDS-P-wetherbeei_contig15592:835..1186Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15592 836..1186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15592.2.1prot_P-wetherbeei_contig15592.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15592 836..1186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15592.2.1

>prot_P-wetherbeei_contig15592.2.1 ID=prot_P-wetherbeei_contig15592.2.1|Name=mRNA_P-wetherbeei_contig15592.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=117bp
MAAVTSAAVLCVAFHPRCPGHFLAGADDGTIRLYRVAHARPLTTWILASI
AGPPSAAAESKQQQGRRAWRGMSAVPPAVTALRWSPTRPAVFLALDAAGT
VHAFDLVREETRALFSE
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mRNA from alignment at P-wetherbeei_contig15592:836..1186-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15592.2.1 ID=mRNA_P-wetherbeei_contig15592.2.1|Name=mRNA_P-wetherbeei_contig15592.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig15592:836..1186- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGCGGTGACGTCGGCGGCAGTCCTCTGCGTGGCTTTCCACCCCCG
GTGTCCAGGCCACTTCCTCGCCGGCGCAGACGACGGCACCATCCGCCTGT
ACCGCGTCGCGCATGCGCGGCCGCTCACGACGTGGATCCTCGCAAGCATA
GCAGGACCGCCGTCCGCCGCGGCGGAGAGCAAGCAGCAGCAGGGACGGCG
GGCGTGGCGCGGCATGTCAGCGGTGCCGCCGGCGGTGACGGCCCTGCGCT
GGTCGCCGACCCGTCCGGCGGTGTTCCTGGCGCTCGATGCCGCCGGCACC
GTGCACGCCTTCGATCTCGTGCGGGAAGAAACGCGGGCACTGTTTTCGGA
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15592:836..1186-

>mRNA_P-wetherbeei_contig15592.2.1 ID=mRNA_P-wetherbeei_contig15592.2.1|Name=mRNA_P-wetherbeei_contig15592.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig15592:836..1186- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGCGGTGACGTCGGCGGCAGTCCTCTGCGTGGCTTTCCACCCCCG
GTGTCCAGGCCACTTCCTCGCCGGCGCAGACGACGGCACCATCCGCCTGT
ACCGCGTCGCGCATGCGCGGCCGCTCACGACGTGGATCCTCGCAAGCATA
GCAGGACCGCCGTCCGCCGCGGCGGAGAGCAAGCAGCAGCAGGGACGGCG
GGCGTGGCGCGGCATGTCAGCGGTGCCGCCGGCGGTGACGGCCCTGCGCT
GGTCGCCGACCCGTCCGGCGGTGTTCCTGGCGCTCGATGCCGCCGGCACC
GTGCACGCCTTCGATCTCGTGCGGGAAGAAACGCGGGCACTGTTTTCGGA
A
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