mRNA_P-wetherbeei_contig15570.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15570.3.1
Unique NamemRNA_P-wetherbeei_contig15570.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15570.3.1 vs. uniprot
Match: A0A4D9D3F9_9STRA (Sld5 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3F9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 7.410e-12
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 VELPFWLGRVLAKQNMVHIELPAYYSARFRDQLAAGAAAVNLRERSNYFY 150
            VELP WL   L  +NMV +ELP +YSARFR+ L AG  AV++RERS +FY
Sbjct:   47 VELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFY 96
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BLAST of mRNA_P-wetherbeei_contig15570.3.1 vs. uniprot
Match: A0A482SDB0_9ARCH (Sld5 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDB0_9ARCH)

HSP 1 Score: 62.0 bits (149), Expect = 1.420e-10
Identity = 24/52 (46.15%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 VELPFWLGRVLAKQNMVHIELPAYYSARFRDQLAAGAAAVNLRERSNYFYRV 156
            VELP W+ ++L ++ M+ ++LP ++  + RD +AAGA+ +NL+E SNYFY V
Sbjct:   46 VELPLWMAQILFRKGMITMDLPKHFERKMRDNIAAGASNLNLKEYSNYFYEV 97
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BLAST of mRNA_P-wetherbeei_contig15570.3.1 vs. uniprot
Match: A0A7S2RKA9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKA9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.450e-8
Identity = 22/50 (44.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 VELPFWLGRVLAKQNMVHIELPAYYSARFRDQLAAGAAAVNLRERSNYFY 150
            V+LP WL R+L ++NM  + LP ++  +FR++L AG A++NLR++S +F+
Sbjct:   67 VDLPLWLARLLHEKNMCQVGLPRHFREKFREELEAGPASINLRDKSAHFF 116
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BLAST of mRNA_P-wetherbeei_contig15570.3.1 vs. uniprot
Match: A0A4V3WRA3_CAMSI (Sld5 domain-containing protein n=3 Tax=Ericales TaxID=41945 RepID=A0A4V3WRA3_CAMSI)

HSP 1 Score: 53.5 bits (127), Expect = 3.910e-7
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    1 VELPFWLGRVLAKQNMVHIELPAYYSARFRDQLAAGAAAVNLRERSNYFYRVCLRL 168
            VELPFWL R L  +  V I LP  ++ + R++LAA AA V+LR R  YFY +  +L
Sbjct:   46 VELPFWLARELHLRQAVSINLPHCFNQKTREELAADAAHVDLRNRCPYFYELGRKL 101
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BLAST of mRNA_P-wetherbeei_contig15570.3.1 vs. uniprot
Match: A0A1R2CRV2_9CILI (Sld5 domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CRV2_9CILI)

HSP 1 Score: 52.4 bits (124), Expect = 1.090e-6
Identity = 20/54 (37.04%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    7 LPFWLGRVLAKQNMVHIELPAYYSARFRDQLAAGAAAVNLRERSNYFYRVCLRL 168
            +P WLG  +A++++  IE+P ++S  +R+ L A    ++L+ER+NYF+ V ++L
Sbjct:   50 IPLWLGISMARRDLAKIEVPKFFSDSYRNTLKADPKIISLKERTNYFFEVGIKL 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15570.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4D9D3F9_9STRA7.410e-1260.00Sld5 domain-containing protein n=3 Tax=Monodopsida... [more]
A0A482SDB0_9ARCH1.420e-1046.15Sld5 domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A7S2RKA9_9STRA1.450e-844.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4V3WRA3_CAMSI3.910e-748.21Sld5 domain-containing protein n=3 Tax=Ericales Ta... [more]
A0A1R2CRV2_9CILI1.090e-637.04Sld5 domain-containing protein n=1 Tax=Stentor coe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15570contigP-wetherbeei_contig15570:1209..1547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G7D2
Preferred nameGINS3
PFAMsSld5
Model size174
Max annot lvl2759|Eukaryota
KEGG koko:K08869,ko:K10734
KEGG ModuleM00286
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0000811,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0022402,GO:0022616,GO:0031261,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071162,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1902292,GO:1902315,GO:1902969,GO:1902975,GO:1903047
Exons2
Evalue1.5e-11
EggNOG OGsCOG5138@1|root,KOG1106@2759|Eukaryota
DescriptionDNA replication
Cds size174
COG categoryS
BRITEko00000,ko00002,ko01001,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186060.6203163-CDS-P-wetherbeei_contig15570:1208..12911683186060.6203163-CDS-P-wetherbeei_contig15570:1208..1291Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15570 1209..1291 +
1683186060.6328652-CDS-P-wetherbeei_contig15570:1456..15471683186060.6328652-CDS-P-wetherbeei_contig15570:1456..1547Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15570 1457..1547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15570.3.1prot_P-wetherbeei_contig15570.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15570 1209..1547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15570.3.1

>prot_P-wetherbeei_contig15570.3.1 ID=prot_P-wetherbeei_contig15570.3.1|Name=mRNA_P-wetherbeei_contig15570.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp
VELPFWLGRVLAKQNMVHIELPAYYSARFRDQLAAGAAAVNLRERSNYFY
RVCLRLL*
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mRNA from alignment at P-wetherbeei_contig15570:1209..1547+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15570.3.1 ID=mRNA_P-wetherbeei_contig15570.3.1|Name=mRNA_P-wetherbeei_contig15570.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig15570:1209..1547+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGAGCTGCCGTTCTGGCTTGGCCGCGTCCTCGCCAAGCAAAACATGGT
CCACATCGAGCTGCCGGCCTACTATTCCGCCAGGTGACCGTAAAAGAAGT
TTATTTGTCGCGGTTGTTTTGAAGACACCATCTTCTCTAACAATTTTGAG
TCAAGATGATGAAGAACCCTTTCAAAATGCTTAGCCGTCCTTGTCTTCTC
ACAGTTTTTCCGCAAACCAACATGCCTCTCGATAAAACCATGCTACAGGT
TTCGGGATCAACTGGCAGCGGGAGCTGCCGCTGTGAACTTGAGAGAACGA
AGCAATTACTTTTATCGGGTATGCCTCCGTTTGCTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15570:1209..1547+

>mRNA_P-wetherbeei_contig15570.3.1 ID=mRNA_P-wetherbeei_contig15570.3.1|Name=mRNA_P-wetherbeei_contig15570.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig15570:1209..1547+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGAGCTGCCGTTCTGGCTTGGCCGCGTCCTCGCCAAGCAAAACATGGT
CCACATCGAGCTGCCGGCCTACTATTCCGCCAGGTTTCGGGATCAACTGG
CAGCGGGAGCTGCCGCTGTGAACTTGAGAGAACGAAGCAATTACTTTTAT
CGGGTATGCCTCCGTTTGCTCTGA
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