mRNA_P-wetherbeei_contig1557.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1557.1.1
Unique NamemRNA_P-wetherbeei_contig1557.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1557.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1557contigP-wetherbeei_contig1557:249..605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size357
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186060.399033-UTR-P-wetherbeei_contig1557:248..2661683186060.399033-UTR-P-wetherbeei_contig1557:248..266Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1557 249..266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186060.4111605-CDS-P-wetherbeei_contig1557:266..6051683186060.4111605-CDS-P-wetherbeei_contig1557:266..605Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1557 267..605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1557.1.1prot_P-wetherbeei_contig1557.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1557 267..605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1557.1.1

>prot_P-wetherbeei_contig1557.1.1 ID=prot_P-wetherbeei_contig1557.1.1|Name=mRNA_P-wetherbeei_contig1557.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
MAAPSIKQLQMLQPPVTATFSDFTVSSETMVNSLNETTGLKITNRQTLRA
RSAITKANEGGYEEGFIDMKGWLEEVADANPTSHTAFGVNSAGHFDAALI
VLPRAAEVRFSL*
back to top

mRNA from alignment at P-wetherbeei_contig1557:249..605+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1557.1.1 ID=mRNA_P-wetherbeei_contig1557.1.1|Name=mRNA_P-wetherbeei_contig1557.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig1557:249..605+ (Phaeothamnion wetherbeei SAG_119_79)
CACGTCAACTGCACCAGCATGGCGGCGCCTTCCATCAAGCAGCTCCAAAT
GCTCCAGCCGCCGGTGACAGCAACGTTTTCTGACTTCACCGTTTCGAGCG
AGACGATGGTGAACAGCCTCAACGAGACGACCGGCCTGAAAATCACCAAC
CGCCAGACGCTGCGGGCGCGCAGCGCCATCACCAAGGCGAACGAAGGCGG
GTACGAGGAAGGATTCATAGACATGAAAGGATGGCTTGAGGAGGTGGCTG
ATGCGAATCCAACCAGCCACACGGCGTTCGGGGTCAACTCGGCGGGTCAC
TTCGACGCCGCCCTTATTGTTCTCCCTCGGGCCGCTGAGGTGCGTTTCTC
TCTTTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1557:249..605+

>mRNA_P-wetherbeei_contig1557.1.1 ID=mRNA_P-wetherbeei_contig1557.1.1|Name=mRNA_P-wetherbeei_contig1557.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig1557:249..605+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCGCCTTCCATCAAGCAGCTCCAAATGCTCCAGCCGCCGGTGAC
AGCAACGTTTTCTGACTTCACCGTTTCGAGCGAGACGATGGTGAACAGCC
TCAACGAGACGACCGGCCTGAAAATCACCAACCGCCAGACGCTGCGGGCG
CGCAGCGCCATCACCAAGGCGAACGAAGGCGGGTACGAGGAAGGATTCAT
AGACATGAAAGGATGGCTTGAGGAGGTGGCTGATGCGAATCCAACCAGCC
ACACGGCGTTCGGGGTCAACTCGGCGGGTCACTTCGACGCCGCCCTTATT
GTTCTCCCTCGGGCCGCTGAGGTGCGTTTCTCTCTTTGA
back to top