mRNA_P-wetherbeei_contig15567.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15567.1.1
Unique NamemRNA_P-wetherbeei_contig15567.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig15567.1.1 vs. uniprot
Match: A0A1F9RS40_9BACT (Uncharacterized protein n=5 Tax=Bacteria TaxID=2 RepID=A0A1F9RS40_9BACT)

HSP 1 Score: 318 bits (814), Expect = 1.150e-98
Identity = 161/257 (62.65%), Postives = 198/257 (77.04%), Query Frame = 1 
Query:   13 KRVVYGLAFLGAIAIAAPPFVKLVTNQSVVISDISVPSALDDRGLGGAVISQRILDHLQEVVTGTGSRKGESAVTGSSIASQLPEIQLPVGGLSLGGLVTQVRAFLGYRDTTISGEIVTATVGDSDKDTLSTYTLRLRMGSQGVIYNSPKASDNVDSLIEDAAMEIMHRFDPINLGFYHYKKKDYANAYRMTETAIANDTPGDDGWAFNMRGLIQRDQRHYPEAIAQFREAIRREPAFVYAYSNLSQTLRMSGQFDE 783
            KRV + +  + AIA+  P FVKLVT + VVI+DI+VPSA+ DRGL   VIS+RILD L E+    GS+K + A+TG+S  SQLP+IQLPVGG++L   ++Q+R FLGY DT ISGEIVT + GD DK     YTLRLRM   GV+Y+S K S ++DS I +AA+E+MHRFDPINLG+Y Y++KDY NAYRMTETA+AND+PGDDGWAFNMRGLI RDQ   PEAIAQFREAIRREP F  AY  LS+TLR++G  +E
Sbjct:   38 KRVAFNVVIIAAIAVGVPVFVKLVTTRGVVINDITVPSAVADRGLTSDVISRRILDQLHEMKMNAGSKKEQEAITGTSTESQLPDIQLPVGGINLAVAISQIRHFLGYVDTKISGEIVTESAGD-DKGNAPAYTLRLRMVGHGVLYHSAKPSASIDSQIAEAAIEVMHRFDPINLGYYLYRRKDYVNAYRMTETALANDSPGDDGWAFNMRGLILRDQGQCPEAIAQFREAIRREPKFAVAYYKLSETLRLTGDLEE 293
[Close]
BLAST of mRNA_P-wetherbeei_contig15567.1.1 vs. uniprot
Match: A0A1W6MYI3_9HYPH (Uncharacterized protein n=1 Tax=Methylocystis bryophila TaxID=655015 RepID=A0A1W6MYI3_9HYPH)

HSP 1 Score: 195 bits (495), Expect = 8.890e-52
Identity = 105/260 (40.38%), Postives = 153/260 (58.85%), Query Frame = 1 
Query:    1 FYMVKRVVYGLAFLGAIAIAAPPFVKLVTNQSVVISDISVPSALDDRGLGGAVISQRILDHLQEVVTGTGSRKGESAVTGSSIASQLPEIQLPVGGLSLGGLVTQVRAFLGYRDTTISGEIVTATVGDSDKDTLSTYTLRLRMGSQGVIYNSPKASDNVDSLIEDAAMEIMHRFDPINLGFYHYKKKDYANAYRMTETAIANDTPGDDGWAFNMRGLIQRDQRHYPEAIAQFREAIRREPAFVYAYSNLSQTLRMSGQFD 780
            F  ++ VV     + A+ +      KL    S V+ DISVP+AL ++G+ G VI+Q+ILDH+ E+    GSRK ++ ++G    S +P I LPVGG ++G +V++VR  LGY +T I+GE+        DKD  + Y LRLR+  +G IY S     +V  LI  AA  IMH+FDPINLG+++Y++KDY  A    + A+A+    +  WA+ MRGLI RD+    EA   F + +  +P F   + NLS  LR+ GQ D
Sbjct:   38 FEPLRIVVVNALVILAVFVGGYTIYKLAAKTSFVVKDISVPAALQEQGITGNVIAQQILDHISEIDAAAGSRKQKAQISGLDFQSTMPTINLPVGGFNMGTIVSEVRRLLGYTETVITGEVFIEE--PKDKDQPAKYGLRLRIAGEGPIYKSETPEPDVQRLIAAAAERIMHKFDPINLGYFYYRQKDYDKAGETADFALASANADNYPWAYTMRGLIARDRGKVSEAARDFHQVVSLDPNFGMGHVNLSGILRLDGQLD 295
[Close]
BLAST of mRNA_P-wetherbeei_contig15567.1.1 vs. uniprot
Match: UPI001BFECBF9 (tetratricopeptide repeat protein n=1 Tax=Polynucleobacter sp. TSB-Sco08W16 TaxID=1758374 RepID=UPI001BFECBF9)

HSP 1 Score: 164 bits (416), Expect = 5.310e-41
Identity = 87/253 (34.39%), Postives = 144/253 (56.92%), Query Frame = 1 
Query:   31 LAFLGAIAIAAPPFVKLVTNQSVVISDISVPSALDDRGLGGAVISQRILDHLQEVVTGTGSRKGESAVTGSSIASQLPEIQLPVG--GLSLGGLVTQVRAFLGYRDTTISGEIVTATVGDSDKDTLSTYTLRLRMGSQGVIYNSPKASDNVDSLIEDAAMEIMHRFDPINLGFYHYKKKDYANAYRMTETAIANDTPGDDGWAFNMRGLIQRDQRHYPEAIAQFREAIRREPAFVYAYSNLSQTLRMSGQFDE 783
            L  +   A+  P   K++T  ++++ +++VP+ L++RGL G V SQR++D + E+   T   K    + G S  +Q P+I LP+   G++L  L+  ++  +G  D  I GE++T      + D L+ Y++R R+   G IY S     ++D L E AAM +M  ++PI + +Y+  K+ Y +A+RMTE AI    PGD  WA  +RGLI+ DQ  +  A  +FR  + R  +F   ++NLS  LR  G+F++
Sbjct:   42 LTVIALFALIVPLIFKVLTKNTIMVQEVTVPAELENRGLSGRVFSQRVIDKILEIANYTEVLKEREDIYGLSKKNQRPDIDLPINIFGVNLETLLGFIKTGIGKSDVRIVGEVITEIPAKPNSDELAGYSVRFRVAKVGTIYQSTSPITDIDLLAEKAAMGVMEEYEPITMAYYYRGKQKYEDAFRMTEKAILKKRPGDIVWAHFVRGLIEMDQARWALAEEEFRFVLERNTSFPRIHNNLSIVLRRQGKFED 294
[Close]
BLAST of mRNA_P-wetherbeei_contig15567.1.1 vs. uniprot
Match: A0A8I1TEN7_9HYPH (Tetratricopeptide repeat protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A8I1TEN7_9HYPH)

HSP 1 Score: 82.4 bits (202), Expect = 4.750e-13
Identity = 66/245 (26.94%), Postives = 113/245 (46.12%), Query Frame = 1 
Query:    7 MVKRVVYGLAFLGAIAIAAPPFVKLVTNQSVVISDISVPSALDDRGLGGAVISQRILDHLQEVVTGTGSRKGESAVTGSSIASQLPEIQLPVGGLSLGGLVTQVRAFLGYRDTTISGEIVTATVGDSDKDTLSTYTLRLRMGSQG--VIYNSPKASDNVDSLIEDAAMEIMHRFDPINLGFYHYKKKDYANAYRMTETAIANDTPGDDGWAFNMRGLIQRDQRHYPEAIAQFREAIRREPAFVYA 735
            +++ +++ +  + A+ +  P  +  + +  V I+ ISVP+AL+++GL G VI  R+ D   +V     + K    V  SS   Q  E  +P  G+S   L+  VRAF G  +T ISGE+       +D  T+    LRLR+  +   VI   P  + +++     A  E +   DP+  G    + +            +A +   D  WA  +   +  D++ Y +A A   EA+R +  FV A
Sbjct:   35 LIRSILFNVLVVLAMIVIVPVMLSELASDRVTITTISVPAALEEKGLNGTVIGNRLWDAWSKVTDEVKAAKETRDVLPSS---QRIEFSIPDSGISFESLIHHVRAFFGRAETRISGELTCV----ADPCTIENSALRLRIIDKEIHVIDLPPPGNGDINLWFRKAVAEALMFIDPVR-GILALRSESETRTIAELRR-LAREGHPDAAWALTVAAQLTTDRKEYDKARALADEALRLDKHFVDA 270
[Close]
BLAST of mRNA_P-wetherbeei_contig15567.1.1 vs. uniprot
Match: A0A847ZT05_9HYPH (Tetratricopeptide repeat protein n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZT05_9HYPH)

HSP 1 Score: 74.7 bits (182), Expect = 1.040e-10
Identity = 70/267 (26.22%), Postives = 120/267 (44.94%), Query Frame = 1 
Query:   10 VKRVVYGLAFLGAIAIAAPPFVKLVTNQSVVISDISVPSALDDRGLGGAVISQRILDHLQEVVTGTGSRKGESAVTGSSIASQLPEIQLPVGGLSLGGLVTQVRAFLGYRDTTISGEIVTATVGDSDKDTLSTYTLRLRMGSQGV---IYNSPKASDNVDSLIEDAAMEIMHRFDPINLGFYHYKKKDYANAYRMTETAIANDTPGDDG----WAFNMRG--LIQRDQRHYPE----AIAQFREAIRREPAFVYAYSNLSQTLRMSG 771
            V++++  LAFLG + +     VK++ +  +V+  I +P  + D G      +  + D+++ +         +  V  +    ++P+I +PV GLS G ++  +R   G     + G+ V      S+    ST  LR+R+  QGV   +  SP    + D++++ AA   M    P+ L  Y + +     A R    AIA      D      A N+ G  L++R ++  PE    AIA F++ I  EP    AY+N    L   G
Sbjct:   40 VRKIILNLAFLGVVGLLIFTAVKVLRSDEMVVDAIGLPKNIKDLGYTEDGAALMLSDNIRRIAGAANDSDAQLQVLANY---EVPDIAVPVEGLSFGSIIRLLRQTFGLPQNRLIGDFVCP----SEPCLSSTMELRMRL-RQGVNKPVALSPVRGTSHDAILQSAAERFMEATAPMELALYLHNEP--TGARRAEGVAIAQQIALTDNENRLTAINLLGVDLLERPEKR-PEDLKAAIAYFQQVIEAEPNAAIAYTNWGAALSALG 295
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15567.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1F9RS40_9BACT1.150e-9862.65Uncharacterized protein n=5 Tax=Bacteria TaxID=2 R... [more]
A0A1W6MYI3_9HYPH8.890e-5240.38Uncharacterized protein n=1 Tax=Methylocystis bryo... [more]
UPI001BFECBF95.310e-4134.39tetratricopeptide repeat protein n=1 Tax=Polynucle... [more]
A0A8I1TEN7_9HYPH4.750e-1326.94Tetratricopeptide repeat protein n=1 Tax=Hyphomicr... [more]
A0A847ZT05_9HYPH1.040e-1026.22Tetratricopeptide repeat protein n=1 Tax=Phyllobac... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15567contigP-wetherbeei_contig15567:36..1532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog935548.KI912159_gene2986
PFAMsTPR_11,TPR_16,TPR_19,TPR_2,TPR_8
Model size1497
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categorychloroplast
Exons1
Evalue4.63e-16
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1NFDA@1224|Proteobacteria
DescriptionTetratricopeptide repeat
Cds size1491
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186060.2514331-CDS-P-wetherbeei_contig15567:35..15261683186060.2514331-CDS-P-wetherbeei_contig15567:35..1526Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15567 36..1526 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186060.2698734-UTR-P-wetherbeei_contig15567:1526..15321683186060.2698734-UTR-P-wetherbeei_contig15567:1526..1532Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15567 1527..1532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15567.1.1prot_P-wetherbeei_contig15567.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15567 36..1526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15567.1.1

>prot_P-wetherbeei_contig15567.1.1 ID=prot_P-wetherbeei_contig15567.1.1|Name=mRNA_P-wetherbeei_contig15567.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=497bp
MVKRVVYGLAFLGAIAIAAPPFVKLVTNQSVVISDISVPSALDDRGLGGA
VISQRILDHLQEVVTGTGSRKGESAVTGSSIASQLPEIQLPVGGLSLGGL
VTQVRAFLGYRDTTISGEIVTATVGDSDKDTLSTYTLRLRMGSQGVIYNS
PKASDNVDSLIEDAAMEIMHRFDPINLGFYHYKKKDYANAYRMTETAIAN
DTPGDDGWAFNMRGLIQRDQRHYPEAIAQFREAIRREPAFVYAYSNLSQT
LRMSGQFDEAAQAARKVIELAPKERQGYTNLALVLIEQGKGDEAVELMNK
AVAAEPRSHHSHFDLGVILQRLKRLDASAAAFRKSAEVKPDFADAYMHLS
NVLHLTGNYPEALALAQKAADLDPKSPMPWNLLGLYALERKDYPHAAASF
RKATAIDKVFVEGYGNLGIALSGEKKYPDAIAAFRKAAEFDPTNADILVH
WAEALEAHGDAAGAIDSYRKAIVLDPKAADALNVRIARLSQGRARH*
back to top

mRNA from alignment at P-wetherbeei_contig15567:36..1532-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15567.1.1 ID=mRNA_P-wetherbeei_contig15567.1.1|Name=mRNA_P-wetherbeei_contig15567.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1497bp|location=Sequence derived from alignment at P-wetherbeei_contig15567:36..1532- (Phaeothamnion wetherbeei SAG_119_79)
TTCTACATGGTGAAGCGGGTCGTCTATGGCCTGGCGTTTCTCGGGGCGAT
CGCGATCGCCGCGCCGCCCTTCGTCAAGCTGGTGACCAACCAGAGCGTCG
TCATCAGCGATATCTCGGTGCCGTCCGCGCTTGACGACCGCGGGCTCGGC
GGCGCGGTGATCTCGCAACGCATTCTCGATCACCTGCAGGAGGTCGTGAC
CGGCACCGGCTCCCGGAAGGGCGAATCCGCGGTCACCGGCAGCAGCATCG
CGAGCCAGCTTCCGGAAATCCAGTTGCCGGTCGGCGGCCTGAGCCTCGGC
GGCCTCGTCACGCAGGTGCGCGCATTCCTGGGCTACCGGGACACCACGAT
CTCGGGCGAGATCGTCACCGCGACGGTCGGCGACAGCGACAAGGACACGC
TCTCGACCTACACGCTGCGGCTGCGCATGGGCTCGCAGGGCGTGATCTAC
AATTCGCCCAAGGCATCGGACAACGTCGACAGCCTGATCGAGGACGCGGC
GATGGAGATCATGCACCGCTTCGACCCGATCAACCTCGGCTTCTATCACT
ACAAGAAAAAAGACTACGCCAACGCCTACCGGATGACCGAAACCGCGATC
GCCAACGATACGCCGGGCGACGACGGCTGGGCGTTCAACATGCGCGGGCT
GATCCAGCGCGACCAGCGGCACTATCCGGAGGCCATCGCGCAATTCCGCG
AGGCGATCCGCCGCGAGCCGGCGTTCGTGTACGCCTACAGCAACCTGTCG
CAGACCCTGCGGATGAGCGGGCAATTCGACGAGGCCGCGCAAGCCGCGCG
CAAGGTCATCGAGCTCGCGCCGAAGGAGCGCCAGGGCTACACCAATCTGG
CGCTGGTGCTGATCGAGCAGGGCAAGGGCGACGAGGCGGTCGAGCTGATG
AACAAGGCGGTCGCCGCCGAGCCGCGCAGCCATCATTCGCATTTCGATCT
CGGCGTCATCCTGCAGCGGCTGAAGCGGCTCGACGCCTCCGCGGCGGCGT
TCCGGAAATCGGCCGAGGTCAAACCCGATTTCGCCGACGCCTACATGCAT
CTGAGCAACGTGCTTCACCTCACCGGGAACTATCCGGAGGCCCTCGCGCT
GGCGCAGAAGGCCGCCGACCTCGATCCGAAATCGCCGATGCCCTGGAACC
TGCTCGGGCTCTACGCGCTCGAGCGCAAGGACTACCCGCACGCCGCGGCC
AGTTTCAGGAAGGCCACCGCGATCGACAAGGTTTTCGTCGAGGGCTACGG
CAATCTCGGCATCGCGCTGAGCGGCGAGAAGAAATACCCGGACGCCATCG
CGGCGTTCCGCAAGGCCGCCGAGTTCGATCCCACCAACGCCGATATCCTG
GTGCACTGGGCCGAGGCCCTGGAGGCGCATGGCGACGCCGCCGGCGCGAT
CGACAGCTATCGCAAGGCCATCGTCCTCGACCCCAAGGCCGCCGATGCGC
TCAACGTCCGGATCGCGCGGCTGTCGCAGGGCCGCGCGCGGCACTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15567:36..1532-

>mRNA_P-wetherbeei_contig15567.1.1 ID=mRNA_P-wetherbeei_contig15567.1.1|Name=mRNA_P-wetherbeei_contig15567.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1491bp|location=Sequence derived from alignment at P-wetherbeei_contig15567:36..1532- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGAAGCGGGTCGTCTATGGCCTGGCGTTTCTCGGGGCGATCGCGAT
CGCCGCGCCGCCCTTCGTCAAGCTGGTGACCAACCAGAGCGTCGTCATCA
GCGATATCTCGGTGCCGTCCGCGCTTGACGACCGCGGGCTCGGCGGCGCG
GTGATCTCGCAACGCATTCTCGATCACCTGCAGGAGGTCGTGACCGGCAC
CGGCTCCCGGAAGGGCGAATCCGCGGTCACCGGCAGCAGCATCGCGAGCC
AGCTTCCGGAAATCCAGTTGCCGGTCGGCGGCCTGAGCCTCGGCGGCCTC
GTCACGCAGGTGCGCGCATTCCTGGGCTACCGGGACACCACGATCTCGGG
CGAGATCGTCACCGCGACGGTCGGCGACAGCGACAAGGACACGCTCTCGA
CCTACACGCTGCGGCTGCGCATGGGCTCGCAGGGCGTGATCTACAATTCG
CCCAAGGCATCGGACAACGTCGACAGCCTGATCGAGGACGCGGCGATGGA
GATCATGCACCGCTTCGACCCGATCAACCTCGGCTTCTATCACTACAAGA
AAAAAGACTACGCCAACGCCTACCGGATGACCGAAACCGCGATCGCCAAC
GATACGCCGGGCGACGACGGCTGGGCGTTCAACATGCGCGGGCTGATCCA
GCGCGACCAGCGGCACTATCCGGAGGCCATCGCGCAATTCCGCGAGGCGA
TCCGCCGCGAGCCGGCGTTCGTGTACGCCTACAGCAACCTGTCGCAGACC
CTGCGGATGAGCGGGCAATTCGACGAGGCCGCGCAAGCCGCGCGCAAGGT
CATCGAGCTCGCGCCGAAGGAGCGCCAGGGCTACACCAATCTGGCGCTGG
TGCTGATCGAGCAGGGCAAGGGCGACGAGGCGGTCGAGCTGATGAACAAG
GCGGTCGCCGCCGAGCCGCGCAGCCATCATTCGCATTTCGATCTCGGCGT
CATCCTGCAGCGGCTGAAGCGGCTCGACGCCTCCGCGGCGGCGTTCCGGA
AATCGGCCGAGGTCAAACCCGATTTCGCCGACGCCTACATGCATCTGAGC
AACGTGCTTCACCTCACCGGGAACTATCCGGAGGCCCTCGCGCTGGCGCA
GAAGGCCGCCGACCTCGATCCGAAATCGCCGATGCCCTGGAACCTGCTCG
GGCTCTACGCGCTCGAGCGCAAGGACTACCCGCACGCCGCGGCCAGTTTC
AGGAAGGCCACCGCGATCGACAAGGTTTTCGTCGAGGGCTACGGCAATCT
CGGCATCGCGCTGAGCGGCGAGAAGAAATACCCGGACGCCATCGCGGCGT
TCCGCAAGGCCGCCGAGTTCGATCCCACCAACGCCGATATCCTGGTGCAC
TGGGCCGAGGCCCTGGAGGCGCATGGCGACGCCGCCGGCGCGATCGACAG
CTATCGCAAGGCCATCGTCCTCGACCCCAAGGCCGCCGATGCGCTCAACG
TCCGGATCGCGCGGCTGTCGCAGGGCCGCGCGCGGCACTAG
back to top