prot_P-wetherbeei_contig15528.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig15528.1.1
Unique Nameprot_P-wetherbeei_contig15528.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length120
Homology
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BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: A0A537P9J1_9PROT (30S ribosomal protein S12 n=7 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A537P9J1_9PROT)

HSP 1 Score: 230 bits (587), Expect = 2.020e-76
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 0 
Query:    1 MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 120
            MPTINQLIRKPRS PSYR+KVPAMQ+CPQKRGVCTRVYTTTPKKPNSALRKVA+VRLTNGFEV SYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRG+LDTQGVVKRRQRRSKYGAK
Sbjct:    1 MPTINQLIRKPRSAPSYRSKVPAMQACPQKRGVCTRVYTTTPKKPNSALRKVARVRLTNGFEVTSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGVLDTQGVVKRRQRRSKYGAK 120
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BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: E2CNX8_9HYPH (30S ribosomal protein S12 n=2 Tax=Stappiaceae TaxID=2821832 RepID=E2CNX8_9HYPH)

HSP 1 Score: 221 bits (563), Expect = 3.710e-72
Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 0 
Query:    1 MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 120
            MPTINQLIRKPR VP+ RNKVPAM++CPQKRGVCTRVYTTTPKKPNSALRKVAK+RLTNGFEV+ YIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRG+LDTQGV  R+QRRSKYGAK
Sbjct:   43 MPTINQLIRKPRKVPAKRNKVPAMEACPQKRGVCTRVYTTTPKKPNSALRKVAKIRLTNGFEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGVLDTQGVKDRKQRRSKYGAK 162
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BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: F2J5S8_POLGS (30S ribosomal protein S12 n=27 Tax=Alphaproteobacteria TaxID=28211 RepID=F2J5S8_POLGS)

HSP 1 Score: 218 bits (555), Expect = 1.540e-71
Identity = 108/120 (90.00%), Postives = 113/120 (94.17%), Query Frame = 0 
Query:    1 MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 120
            MPTINQLIRKPR  P  RNKVPAM++CPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEV+ YIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRG+LDTQGV  R+QRRSKYGAK
Sbjct:    1 MPTINQLIRKPRKDPPKRNKVPAMEACPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGVLDTQGVKDRKQRRSKYGAK 120
[Close]
BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: A0A1Y6CR00_9HYPH (30S ribosomal protein S12 n=5 Tax=root TaxID=1 RepID=A0A1Y6CR00_9HYPH)

HSP 1 Score: 218 bits (555), Expect = 1.540e-71
Identity = 108/120 (90.00%), Postives = 113/120 (94.17%), Query Frame = 0 
Query:    1 MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 120
            MPTINQLIRKPR     RNKVPAMQ+CPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG+EVV+YIPGEGHNLQEHSVV+IRGGRVKDLPGVRYHIIRG LDTQG+ KRRQRRSKYGAK
Sbjct:    1 MPTINQLIRKPRQAQPTRNKVPAMQACPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGYEVVTYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGALDTQGIAKRRQRRSKYGAK 120
[Close]
BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: A0A2E6GJL9_9PROT (30S ribosomal protein S12 n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GJL9_9PROT)

HSP 1 Score: 218 bits (555), Expect = 1.540e-71
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0 
Query:    1 MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 120
            MPT+NQLIRKPR  P  RNKVPAMQ CPQKRGVCTRVYTTTPKKPNSALRKVA+VRLTNG EV+SYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGV  RRQRRSKYGAK
Sbjct:    1 MPTVNQLIRKPRKRPIVRNKVPAMQGCPQKRGVCTRVYTTTPKKPNSALRKVARVRLTNGAEVISYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVTDRRQRRSKYGAK 120
[Close]
BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: RS12_RHORT (30S ribosomal protein S12 n=67 Tax=Bacteria TaxID=2 RepID=RS12_RHORT)

HSP 1 Score: 217 bits (552), Expect = 4.410e-71
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0 
Query:    1 MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 120
            MPTINQLIRKPR     RNKVPAMQ+CPQKRGVCTRVYTTTPKKPNSALRKVA+VRLTNGFEV SYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRG+LDTQGV  RRQRRSKYGAK
Sbjct:    1 MPTINQLIRKPRKAVVKRNKVPAMQACPQKRGVCTRVYTTTPKKPNSALRKVARVRLTNGFEVTSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGVLDTQGVKDRRQRRSKYGAK 120
[Close]
BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: A0A2N5B4M4_RHILI (30S ribosomal protein S12 n=4 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2N5B4M4_RHILI)

HSP 1 Score: 217 bits (552), Expect = 4.410e-71
Identity = 106/120 (88.33%), Postives = 113/120 (94.17%), Query Frame = 0 
Query:    1 MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 120
            MPT+NQLIRKPR VP+ RNKVPAMQ  PQKRGVCTRVYTTTPKKPNSALRKVAK+RLTNGFEV+ YIPGEGHNLQEHSVVMIRGGRVKDLPGVRYH+IRG+LDTQGV  R+QRRSKYGAK
Sbjct:    1 MPTVNQLIRKPRQVPATRNKVPAMQQNPQKRGVCTRVYTTTPKKPNSALRKVAKIRLTNGFEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHVIRGVLDTQGVKNRKQRRSKYGAK 120
[Close]
BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: E3HZR9_RHOVT (30S ribosomal protein S12 n=4 Tax=Bacteria TaxID=2 RepID=E3HZR9_RHOVT)

HSP 1 Score: 216 bits (551), Expect = 6.260e-71
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0 
Query:    1 MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 120
            MPTI QLIRKPR  P  RNKVPAM  CPQKRGVCTRVYTTTPKKPNSALRKVA+VRLTNGFEV SYIPGEGHNLQEHSVV+IRGGRVKDLPGVRYHIIRG+LDTQGV KRRQRRSKYGAK
Sbjct:    1 MPTIQQLIRKPRVAPVKRNKVPAMTECPQKRGVCTRVYTTTPKKPNSALRKVARVRLTNGFEVTSYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGVLDTQGVAKRRQRRSKYGAK 120
[Close]
BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: A0A1E4C938_9HYPH (30S ribosomal protein S12 n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A1E4C938_9HYPH)

HSP 1 Score: 216 bits (550), Expect = 8.900e-71
Identity = 106/120 (88.33%), Postives = 112/120 (93.33%), Query Frame = 0 
Query:    1 MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 120
            MPTI QLIRKPR  P  RNKVPAM++CPQKRGVCTRVYTTTPKKPNSALRKVAK+RLTNGFEV+ YIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRG+LDTQGV  R+QRRSKYGAK
Sbjct:    1 MPTIQQLIRKPRVKPRERNKVPAMEACPQKRGVCTRVYTTTPKKPNSALRKVAKIRLTNGFEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGVLDTQGVANRKQRRSKYGAK 120
[Close]
BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: RS12_MAGSA (30S ribosomal protein S12 n=12 Tax=Rhodospirillales TaxID=204441 RepID=RS12_MAGSA)

HSP 1 Score: 214 bits (546), Expect = 3.620e-70
Identity = 108/120 (90.00%), Postives = 112/120 (93.33%), Query Frame = 0 
Query:    1 MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 120
            MPTINQLIRKPR   + RNKVPAM++CPQKRGVCTRVYTTTPKKPNSALRKVA+VRLTNGFEV SYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRG LDTQGV  RRQRRSKYGAK
Sbjct:    1 MPTINQLIRKPRQPVAARNKVPAMEACPQKRGVCTRVYTTTPKKPNSALRKVARVRLTNGFEVTSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGTLDTQGVKDRRQRRSKYGAK 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537P9J1_9PROT2.020e-7695.0030S ribosomal protein S12 n=7 Tax=Alphaproteobacte... [more]
E2CNX8_9HYPH3.710e-7290.0030S ribosomal protein S12 n=2 Tax=Stappiaceae TaxI... [more]
F2J5S8_POLGS1.540e-7190.0030S ribosomal protein S12 n=27 Tax=Alphaproteobact... [more]
A0A1Y6CR00_9HYPH1.540e-7190.0030S ribosomal protein S12 n=5 Tax=root TaxID=1 Rep... [more]
A0A2E6GJL9_9PROT1.540e-7190.8330S ribosomal protein S12 n=2 Tax=Rhodospirillacea... [more]
RS12_RHORT4.410e-7190.8330S ribosomal protein S12 n=67 Tax=Bacteria TaxID=... [more]
A0A2N5B4M4_RHILI4.410e-7188.3330S ribosomal protein S12 n=4 Tax=Hyphomicrobiales... [more]
E3HZR9_RHOVT6.260e-7190.0030S ribosomal protein S12 n=4 Tax=Bacteria TaxID=2... [more]
A0A1E4C938_9HYPH8.900e-7188.3330S ribosomal protein S12 n=3 Tax=Proteobacteria T... [more]
RS12_MAGSA3.620e-7090.0030S ribosomal protein S12 n=12 Tax=Rhodospirillale... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 42..57
score: 90.1
coord: 94..110
score: 59.07
coord: 110..120
score: 61.0
coord: 58..77
score: 70.9
coord: 77..94
score: 83.18
coord: 27..42
score: 77.69
IPR006032Ribosomal protein S12/S23PIRSFPIRSF002133RPS12p_RPS12a_RPS23e_RPS12ocoord: 1..120
e-value: 1.0E-52
score: 174.8
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 17..120
e-value: 1.9E-40
score: 137.0
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 1..119
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 43..50
IPR005679Ribosomal protein S12, bacterial-typeTIGRFAMTIGR00981TIGR00981coord: 1..120
e-value: 1.4E-65
score: 216.7
IPR005679Ribosomal protein S12, bacterial-typeHAMAPMF_00403_BRibosomal_S12_Bcoord: 1..120
score: 36.224865
IPR005679Ribosomal protein S12, bacterial-typeCDDcd03368Ribosomal_S12coord: 3..110
e-value: 3.85243E-66
score: 193.504
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 1..120
e-value: 3.6E-62
score: 209.8
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..120
NoneNo IPR availablePANTHERPTHR11652:SF1MITOCHONDRIAL RIBOSOMAL PROTEIN, SMALLcoord: 1..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15528contigP-wetherbeei_contig15528:3..362 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15528.1.1mRNA_P-wetherbeei_contig15528.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig15528 3..377 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig15528.1.1 ID=prot_P-wetherbeei_contig15528.1.1|Name=mRNA_P-wetherbeei_contig15528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALR
KVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRG
ILDTQGVVKRRQRRSKYGAK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006032Ribosomal_S12/S23
IPR005679Ribosomal_S12_bac
IPR012340NA-bd_OB-fold