mRNA_P-wetherbeei_contig15525.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15525.2.1
Unique NamemRNA_P-wetherbeei_contig15525.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15525.2.1 vs. uniprot
Match: A0A3C0YDI2_9BURK (Cytochrome c domain-containing protein n=1 Tax=Polaromonas sp. TaxID=1869339 RepID=A0A3C0YDI2_9BURK)

HSP 1 Score: 150 bits (380), Expect = 3.360e-43
Identity = 74/173 (42.77%), Postives = 103/173 (59.54%), Query Frame = 1
Query:    1 IKIRGILAGAVGTLLLLGGGAWGAAKMGLIPANADTSPGSLERRFAHTALDAWLDKNTPAQENPVALNDANLLEGMKIYKSNCMGCHGDKNGE---SAFGRAFYPPTPQFTKGKSPHDPDAVFHTLVVHGVRLTGMPAFGNLLKDDEIWKTILFIKNLSKLPPAVESEWQKAQ 510
            + ++G+++G   TL +   GA+   + GLIPANAD  PG LE   A T+L+A L ++ P  +NPVALN+ NLL G+ +Y  NC  CHG   G+   S   +  YP  PQ        DP+      + HGVRLTGMP+FGN L D +IW   LF+K++ KLPP V+  W++ Q
Sbjct:    5 VMLKGVVSGVALTLAVALIGAYSLVQSGLIPANADAKPGRLETWMARTSLNATLRRDAPKGQNPVALNEQNLLNGVHLYAQNCAVCHGSARGDASSSPIAKGLYPEPPQLATEGVEDDPEGASFWRIKHGVRLTGMPSFGNSLSDQQIWTLALFLKHMDKLPPTVQQTWEQVQ 177          
BLAST of mRNA_P-wetherbeei_contig15525.2.1 vs. uniprot
Match: A0A522H629_9GAMM (Cytochrome c n=1 Tax=Rhodanobacter sp. TaxID=1883446 RepID=A0A522H629_9GAMM)

HSP 1 Score: 144 bits (362), Expect = 1.720e-40
Identity = 73/171 (42.69%), Postives = 102/171 (59.65%), Query Frame = 1
Query:    7 IRGILAGAVGTLLLLGGGAWGAAKMGLIPANADTSPGSLERRFAHTALDAWLDKNTPAQENPVALNDANLLEGMKIYKSNCMGCHGDKNGESA---FGRAFYPPTPQFTKGKSPHDPDAVFHTLVVHGVRLTGMPAFGNLLKDDEIWKTILFIKNLSKLPPAVESEWQKAQ 510
            ++GI+ G +    +   GA+   + G IPANAD  PG LE+  A T+L A L ++ P   NPVALND NLL+G++++  NC  CHG   G +A     +  YP  PQ        DP+ V    + HG+RLTGMP++G  L D +IW   LF+K++ KLPPAVE+ WQ+ Q
Sbjct:    2 LKGIVTGVILAFAVALLGAYLLVRSGFIPANADAKPGGLEKWMASTSLHATLQRDAPKGPNPVALNDQNLLDGVRLFGQNCAVCHGSAKGAAAPSPIAKGEYPRPPQLATHGVEDDPEGVSFWKIKHGIRLTGMPSWGYSLTDRQIWTLALFLKHMDKLPPAVEASWQQVQ 172          
BLAST of mRNA_P-wetherbeei_contig15525.2.1 vs. uniprot
Match: A0A1E4NT29_9BURK (Cytochrome c domain-containing protein n=1 Tax=Rubrivivax sp. SCN 70-15 TaxID=1660139 RepID=A0A1E4NT29_9BURK)

HSP 1 Score: 142 bits (359), Expect = 4.100e-40
Identity = 72/171 (42.11%), Postives = 100/171 (58.48%), Query Frame = 1
Query:    7 IRGILAGAVGTLLLLGGGAWGAAKMGLIPANADTSPGSLERRFAHTALDAWLDKNTPAQENPVALNDANLLEGMKIYKSNCMGCHGDKNGESA---FGRAFYPPTPQFTKGKSPHDPDAVFHTLVVHGVRLTGMPAFGNLLKDDEIWKTILFIKNLSKLPPAVESEWQKAQ 510
            ++G+++G V TL++     +G    GLIPANAD +PG +E   A T+L A L +  P + NPVAL D NLLEG+ +Y  NC  CHGD  G +A     +  Y   PQ        DPDAV    + HG+RLT MP+F   L D ++W   LF+ ++ KLPPAV+  WQ+ +
Sbjct:    2 LKGVMSGIVLTLVVAALVGFGLLHSGLIPANADATPGPIETWMAKTSLHATLRREAPTEPNPVALTDPNLLEGVDLYARNCAVCHGDSRGAAAPSPIAKGLYQKPPQLATDGVEDDPDAVSFWKIKHGIRLTAMPSFRGTLTDQQMWTLALFVGHMDKLPPAVQQAWQQVR 172          
BLAST of mRNA_P-wetherbeei_contig15525.2.1 vs. uniprot
Match: A0A328B0I7_9CAUL (Cytochrome c domain-containing protein n=2 Tax=Phenylobacterium hankyongense TaxID=1813876 RepID=A0A328B0I7_9CAUL)

HSP 1 Score: 142 bits (357), Expect = 6.680e-40
Identity = 75/171 (43.86%), Postives = 101/171 (59.06%), Query Frame = 1
Query:    7 IRGILAGAVGTLLLLGGGAWGAAKMGLIPANADTSPGSLERRFAHTALDAWLDKNTPAQENPVALNDANLLEGMKIYKSNCMGCHGDKNGE---SAFGRAFYPPTPQFTKGKSPHDPDAVFHTLVVHGVRLTGMPAFGNLLKDDEIWKTILFIKNLSKLPPAVESEWQKAQ 510
            +RG +AG V  +++    A+G  + GLIPANAD  PG LE   A T+L+A L    P   NPVAL DANLLEG+K+Y  NC  CHG   GE   S   +  YP  PQ        DP+   +  + HGVRLTGMP++G  L D +IW   LF+K++ KLPP  ++ W++ +
Sbjct:    1 MRGFIAGVVTVIVVGLICAYGLLQSGLIPANADAKPGGLELWAAGTSLNATLRTAAPKGPNPVALTDANLLEGVKLYGQNCALCHGTAAGEASASPIAKGLYPAPPQLASEGVEDDPEGASYWRIKHGVRLTGMPSWGGTLSDQQIWTLALFLKHMDKLPPGPQAAWKQVR 171          
BLAST of mRNA_P-wetherbeei_contig15525.2.1 vs. uniprot
Match: A0A522HJ10_9GAMM (Cytochrome c n=1 Tax=Rhodanobacter sp. TaxID=1883446 RepID=A0A522HJ10_9GAMM)

HSP 1 Score: 137 bits (345), Expect = 6.360e-38
Identity = 72/171 (42.11%), Postives = 97/171 (56.73%), Query Frame = 1
Query:    7 IRGILAGAVGTLLLLGGGAWGAAKMGLIPANADTSPGSLERRFAHTALDAWLDKNTPAQENPVALNDANLLEGMKIYKSNCMGCHGDKNGE---SAFGRAFYPPTPQFTKGKSPHDPDAVFHTLVVHGVRLTGMPAFGNLLKDDEIWKTILFIKNLSKLPPAVESEWQKAQ 510
            ++GI+ G +    +   GA+     G IPANAD  PG LE   A T+LDA L +  P   NPVALND NLL+G++++  NC  CHG   G    S      YP  PQ        DP+ V    + HG+RLTGMP++   L D +IW   LF+K+++KLPPAV+  WQ+ Q
Sbjct:    2 LKGIVTGVILAFAVALLGAYLLVHSGYIPANADAQPGWLETWMAGTSLDATLQREAPKGPNPVALNDQNLLDGVRLFGQNCAVCHGSAQGSASPSPIAEGEYPKPPQLATDGVEDDPEGVSFWKIKHGIRLTGMPSWRYSLTDRQIWTLALFLKHMNKLPPAVQKSWQQVQ 172          
BLAST of mRNA_P-wetherbeei_contig15525.2.1 vs. uniprot
Match: A0A1J5R493_9ZZZZ (Cytochrome c n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5R493_9ZZZZ)

HSP 1 Score: 130 bits (328), Expect = 2.330e-35
Identity = 65/152 (42.76%), Postives = 88/152 (57.89%), Query Frame = 1
Query:   58 GAWGAAKMGLIPANADTSPGSLERRFAHTALDAWLDKNTPAQENPVALNDANLLEGMKIYKSNCMGCHGDKNGESA---FGRAFYPPTPQFTKGKSPHDPDAVFHTLVVHGVRLTGMPAFGNLLKDDEIWKTILFIKNLSKLPPAVESEWQK 504
            GA+   + G IPANAD  PG LE   A T+L A L +  P  +NPVALND NL+ G++++  NC  CHGD  G +A     +  Y   PQ        DP       + HG+RLTGMP+F + L D +IW   LF++++ KLPPAV+  WQ+
Sbjct:   19 GAYALVQSGYIPANADARPGWLETWTARTSLRATLKREAPKGDNPVALNDQNLIAGVQLFAQNCAVCHGDARGAAAPSPIAKGLYQKPPQLATDGVEDDPQGYSFWKIQHGIRLTGMPSFRDTLNDRQIWTLALFLQHMDKLPPAVQQVWQQ 170          
BLAST of mRNA_P-wetherbeei_contig15525.2.1 vs. uniprot
Match: A0A2W5XDT7_9BACT (Cytochrome c domain-containing protein n=1 Tax=Candidatus Eremiobacter sp. RRmetagenome_bin22 TaxID=2599629 RepID=A0A2W5XDT7_9BACT)

HSP 1 Score: 130 bits (328), Expect = 1.270e-34
Identity = 67/166 (40.36%), Postives = 99/166 (59.64%), Query Frame = 1
Query:   10 RGILAGAVGTLLLLGGGAWGAAKMGLIPANADTSPGSLERRFAHTALDAWLDKNTPAQENPVALNDANLLEGMKIYKSNCMGCHGDKNGE-SAFGRAFYPPTPQFTKGKSPHDPDAVFHTLVVHGVRLTGMPAFGNLLKDDEIWKTILFIKNLSKLPPAVESEWQK 504
            R ++ GA G L++    A+ A   GL+PANAD  P SLER  A  +L+A + +    + NP+ ++DANL  G+K+Y SNC  CHG  + + S      Y   PQ  K     D +   H  + HG+RLTGMP+FG  L D EIW+ ++F+K++ KLP A +++W+K
Sbjct:   63 RWVVLGAAGVLVVGLLVAYAAVAFGLVPANADGKPSSLERWAARKSLNATVQREAGGKANPLPVDDANLKAGIKLYGSNCAVCHGASDAKGSNIALGLYQHAPQLGKHGVEDDAEGETHWKIQHGIRLTGMPSFGKSLNDTEIWQLVMFLKHMDKLPSAAQADWKK 228          
BLAST of mRNA_P-wetherbeei_contig15525.2.1 vs. uniprot
Match: A0A7C5UYA8_9BACT (Cytochrome c n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7C5UYA8_9BACT)

HSP 1 Score: 125 bits (315), Expect = 2.580e-33
Identity = 67/161 (41.61%), Postives = 92/161 (57.14%), Query Frame = 1
Query:   25 GAVGTLLLLGGGAWGAAKMGLIPANADTSPGSLERRFAHTALDAWLDKNTPAQENPVALNDANLLEGMKIYKSNCMGCHGDK-NGESAFGRAFYPPTPQFTKGKSPHDPDAVFHTLVVHGVRLTGMPAFGNLLKDDEIWKTILFIKNLSKLPPAVESEWQK 504
            GAV  LLL+  G     + G +   AD  P   E +     LDA +D+  P + +PVA  DANL+EG+++YK++C  CHG   N E  FG  FYP  P FTK  +P   +     ++ HG+R +GMPA+G +L D +IW    F+  + KLPPA E EWQK
Sbjct:    2 GAVVMLLLILVGLLFYLRAGYLDMRADIPPSRFETQSVMRFLDASVDRRAPDESSPVAPTDANLIEGIRLYKTHCSMCHGAPGNPEKDFGHPFYPSAPNFTKD-APDMTEGENFYIIKHGIRWSGMPAWGGVLTDQQIWTITTFLSQMEKLPPAAEEEWQK 161          
BLAST of mRNA_P-wetherbeei_contig15525.2.1 vs. uniprot
Match: A0A2V9ZG43_9BACT (Cytochrome c domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9ZG43_9BACT)

HSP 1 Score: 123 bits (308), Expect = 2.400e-32
Identity = 67/167 (40.12%), Postives = 93/167 (55.69%), Query Frame = 1
Query:    7 IRGILAGAVGTLLLLGGGAWGAAKMGLIPANADTSPGSLERRFAHTALDAWLDKNTPAQENPVALNDANLLEGMKIYKSNCMGCHGD-KNGESAFGRAFYPPTPQFTKGKSPHDPDAVFHTLVVHGVRLTGMPAFGNLLKDDEIWKTILFIKNLSKLPPAVESEWQK 504
            +R  + G +  L+LL   A G+A +GL P NAD +P   E R A  ALDA ++++ P   NP+   DANL++GMK+Y  NC  CHG   N  S   R+ YPP PQ    +   DP+         GVR TGMPA+G +L + ++WK   F+  + KLP   +  WQK
Sbjct:    1 MRNFILGMIFVLVLLAVCALGSALLGLTPTNADATPPRWETRLASAALDASMERHAPRINNPLPATDANLIDGMKVYTMNCALCHGGLDNKPSPLRRSMYPPPPQVIL-EPMDDPEWHIFYATRTGVRYTGMPAWGKVLSEQDLWKVTGFLARVEKLPSGAKEYWQK 166          
BLAST of mRNA_P-wetherbeei_contig15525.2.1 vs. uniprot
Match: A0A2V8PFG2_9BACT (Cytochrome c domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8PFG2_9BACT)

HSP 1 Score: 121 bits (304), Expect = 5.980e-32
Identity = 63/163 (38.65%), Postives = 98/163 (60.12%), Query Frame = 1
Query:   25 GAVGTLLLLGGGAWGAAKMGLIPANADTSPGSLERRFAHTALDAWLDKNTPAQENPVALNDANLLEGMKIYKSNCMGCHGDKNGE-SAFGRAFYPPTPQFTKGKSPHDPDAVFHTLVVHGVRLTGMPAFGNLLKDDEIWKTILFIKNLSKLPPAVESEWQKAQ 510
            GAV TL LL   +    ++GL+P +AD +   LE R     L A + ++   + NPV LN+  L  G+  YK+ C  CH   +GE S +G++FYPP P+  +G S +    +F  ++ HG+R TGMP +G++L D+EIW+ +  +KN   LPP+VE+EW  ++
Sbjct:    2 GAVLTLALLLLSSLVVTRLGLMPVSADGTHSRLEARIMPAVLHASIVRHASEETNPVRLNEDTLKAGVDTYKAMCARCHSTPDGEASVYGQSFYPPAPKLPEGMSQYTDSQLFW-VIKHGIRNTGMPGWGSMLSDEEIWQVVSLLKNSLDLPPSVEAEWSTSK 163          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15525.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0YDI2_9BURK3.360e-4342.77Cytochrome c domain-containing protein n=1 Tax=Pol... [more]
A0A522H629_9GAMM1.720e-4042.69Cytochrome c n=1 Tax=Rhodanobacter sp. TaxID=18834... [more]
A0A1E4NT29_9BURK4.100e-4042.11Cytochrome c domain-containing protein n=1 Tax=Rub... [more]
A0A328B0I7_9CAUL6.680e-4043.86Cytochrome c domain-containing protein n=2 Tax=Phe... [more]
A0A522HJ10_9GAMM6.360e-3842.11Cytochrome c n=1 Tax=Rhodanobacter sp. TaxID=18834... [more]
A0A1J5R493_9ZZZZ2.330e-3542.76Cytochrome c n=1 Tax=mine drainage metagenome TaxI... [more]
A0A2W5XDT7_9BACT1.270e-3440.36Cytochrome c domain-containing protein n=1 Tax=Can... [more]
A0A7C5UYA8_9BACT2.580e-3341.61Cytochrome c n=1 Tax=Acidobacteria bacterium TaxID... [more]
A0A2V9ZG43_9BACT2.400e-3240.12Cytochrome c domain-containing protein n=1 Tax=Aci... [more]
A0A2V8PFG2_9BACT5.980e-3238.65Cytochrome c domain-containing protein n=1 Tax=Aci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15525contigP-wetherbeei_contig15525:1089..1601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog204669.Acid345_4349
PFAMsCytochrome_CBB3
Model size513
Max annot lvl204432|Acidobacteriia
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.42e-33
EggNOG OGsCOG2010@1|root,COG2010@2|Bacteria,3Y4X7@57723|Acidobacteria,2JJFH@204432|Acidobacteriia
DescriptionCytochrome C oxidase, cbb3-type, subunit III
Cds size513
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186058.9028795-CDS-P-wetherbeei_contig15525:1088..16011683186058.9028795-CDS-P-wetherbeei_contig15525:1088..1601Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15525 1089..1601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15525.2.1prot_P-wetherbeei_contig15525.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15525 1089..1601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15525.2.1

>prot_P-wetherbeei_contig15525.2.1 ID=prot_P-wetherbeei_contig15525.2.1|Name=mRNA_P-wetherbeei_contig15525.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
IKIRGILAGAVGTLLLLGGGAWGAAKMGLIPANADTSPGSLERRFAHTAL
DAWLDKNTPAQENPVALNDANLLEGMKIYKSNCMGCHGDKNGESAFGRAF
YPPTPQFTKGKSPHDPDAVFHTLVVHGVRLTGMPAFGNLLKDDEIWKTIL
FIKNLSKLPPAVESEWQKAQ*
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mRNA from alignment at P-wetherbeei_contig15525:1089..1601-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15525.2.1 ID=mRNA_P-wetherbeei_contig15525.2.1|Name=mRNA_P-wetherbeei_contig15525.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig15525:1089..1601- (Phaeothamnion wetherbeei SAG_119_79)
ATAAAGATACGTGGGATTTTGGCAGGGGCCGTGGGGACGCTCCTGCTTCT GGGGGGAGGCGCGTGGGGGGCTGCAAAGATGGGCCTCATCCCCGCCAATG CCGATACTTCTCCGGGGAGTTTGGAGAGACGGTTCGCTCACACGGCGCTC GACGCGTGGCTGGATAAGAATACTCCCGCCCAGGAGAACCCGGTCGCGCT CAACGATGCGAACCTGTTGGAAGGGATGAAGATCTACAAGAGCAACTGCA TGGGTTGCCACGGAGATAAAAATGGAGAGTCCGCTTTTGGCCGGGCCTTT TATCCTCCCACCCCTCAGTTCACCAAAGGCAAATCCCCCCACGACCCTGA TGCCGTGTTCCACACGTTAGTGGTGCACGGCGTTCGCCTTACCGGGATGC CGGCTTTTGGGAATCTCCTCAAAGACGATGAAATCTGGAAGACCATCCTT TTTATTAAGAACCTCAGCAAGCTGCCCCCGGCGGTCGAGTCGGAGTGGCA AAAGGCTCAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15525:1089..1601-

>mRNA_P-wetherbeei_contig15525.2.1 ID=mRNA_P-wetherbeei_contig15525.2.1|Name=mRNA_P-wetherbeei_contig15525.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig15525:1089..1601- (Phaeothamnion wetherbeei SAG_119_79)
ATAAAGATACGTGGGATTTTGGCAGGGGCCGTGGGGACGCTCCTGCTTCT
GGGGGGAGGCGCGTGGGGGGCTGCAAAGATGGGCCTCATCCCCGCCAATG
CCGATACTTCTCCGGGGAGTTTGGAGAGACGGTTCGCTCACACGGCGCTC
GACGCGTGGCTGGATAAGAATACTCCCGCCCAGGAGAACCCGGTCGCGCT
CAACGATGCGAACCTGTTGGAAGGGATGAAGATCTACAAGAGCAACTGCA
TGGGTTGCCACGGAGATAAAAATGGAGAGTCCGCTTTTGGCCGGGCCTTT
TATCCTCCCACCCCTCAGTTCACCAAAGGCAAATCCCCCCACGACCCTGA
TGCCGTGTTCCACACGTTAGTGGTGCACGGCGTTCGCCTTACCGGGATGC
CGGCTTTTGGGAATCTCCTCAAAGACGATGAAATCTGGAAGACCATCCTT
TTTATTAAGAACCTCAGCAAGCTGCCCCCGGCGGTCGAGTCGGAGTGGCA
AAAGGCTCAATGA
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