mRNA_P-wetherbeei_contig15520.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15520.2.1
Unique NamemRNA_P-wetherbeei_contig15520.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15520.2.1 vs. uniprot
Match: A0A836CAY7_9STRA (Serine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 6.120e-10
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    1 DVAGLNDHLLVFSYVGGYVPAHGDAKAFAVVAPRA--AEVAALPNVGRWLEHMESFTDADRAAW 186
            D   LN +LL  SYVGG++P+  D KA   +   A  AE    PNV RWLEHME+FT  +RAAW
Sbjct:  711 DFGALNAYLLAHSYVGGWLPSARDDKAAEAIVNGALHAEARQHPNVARWLEHMETFTAVERAAW 774
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15520.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CAY7_9STRA6.120e-1051.56Serine--tRNA ligase n=1 Tax=Tribonema minus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15520contigP-wetherbeei_contig15520:1220..1411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog45157.CME120CT
Preferred nameEEF1D
PFAMsEF-1_beta_acid,EF1_GNE,tRNA-synt_1e
Model size192
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01866,ko:K01868,ko:K01873,ko:K01875,ko:K01883,ko:K01890,ko:K02727,ko:K03232,ko:K06626,ko:K15410
KEGG ReactionR02918,R03650,R03660,R03662,R03663,R03665,R08218
KEGG Pathwayko00970,ko03050,ko04110,ko04114,ko04115,ko04151,ko04218,ko04391,ko04934,ko05161,ko05162,ko05165,ko05168,ko05200,ko05203,ko05206,ko05215,ko05222,ko05226,map00970,map03050,map04110,map04114,map04115,map04151,map04218,map04391,map04934,map05161,map05162,map05165,map05168,map05200,map05203,map05206,map05215,map05222,map05226
KEGG ModuleM00337,M00340,M00359,M00360,M00692
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0000166,GO:0001650,GO:0002181,GO:0002182,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003746,GO:0003779,GO:0003785,GO:0003824,GO:0004812,GO:0004817,GO:0005085,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005853,GO:0005938,GO:0006082,GO:0006139,GO:0006351,GO:0006399,GO:0006412,GO:0006414,GO:0006417,GO:0006418,GO:0006423,GO:0006449,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006996,GO:0007010,GO:0007015,GO:0008092,GO:0008134,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0008154,GO:0009058,GO:0009059,GO:0009299,GO:0009314,GO:0009628,GO:0009636,GO:0009889,GO:0009987,GO:0010033,GO:0010212,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0010639,GO:0010941,GO:0016043,GO:0016070,GO:0016071,GO:0016874,GO:0016875,GO:0017076,GO:0018130,GO:0019222,GO:0019438,GO:0019538,GO:0019752,GO:0019899,GO:0022607,GO:0030029,GO:0030036,GO:0030041,GO:0030554,GO:0031072,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032231,GO:0032232,GO:0032268,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033613,GO:0034248,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035639,GO:0036094,GO:0042221,GO:0042493,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045471,GO:0046483,GO:0046677,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051128,GO:0051129,GO:0051171,GO:0051246,GO:0051258,GO:0051493,GO:0051494,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097305,GO:0097367,GO:0097435,GO:0097659,GO:0098772,GO:0099568,GO:0104004,GO:0110053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1902903,GO:1902904,GO:1990145,GO:2000112
Exons1
Evalue4.63e-08
EggNOG OGsCOG2092@1|root,KOG1668@2759|Eukaryota
EC3.4.25.1,6.1.1.1,6.1.1.11,6.1.1.16,6.1.1.20,6.1.1.3,6.1.1.9
Descriptiontranslation elongation factor activity
Cds size192
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko01007,ko03012,ko03016,ko03029,ko03032,ko03036,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186058.8222113-CDS-P-wetherbeei_contig15520:1219..14111683186058.8222113-CDS-P-wetherbeei_contig15520:1219..1411Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15520 1220..1411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15520.2.1prot_P-wetherbeei_contig15520.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15520 1220..1411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15520.2.1

>prot_P-wetherbeei_contig15520.2.1 ID=prot_P-wetherbeei_contig15520.2.1|Name=mRNA_P-wetherbeei_contig15520.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=64bp
DVAGLNDHLLVFSYVGGYVPAHGDAKAFAVVAPRAAEVAALPNVGRWLEH
MESFTDADRAAWP*
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mRNA from alignment at P-wetherbeei_contig15520:1220..1411+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15520.2.1 ID=mRNA_P-wetherbeei_contig15520.2.1|Name=mRNA_P-wetherbeei_contig15520.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig15520:1220..1411+ (Phaeothamnion wetherbeei SAG_119_79)
GACGTCGCGGGGTTGAACGACCATCTGCTCGTCTTTTCGTACGTCGGGGG
CTACGTCCCGGCGCACGGCGATGCCAAGGCGTTTGCGGTGGTGGCGCCGC
GGGCGGCGGAGGTGGCGGCGCTCCCGAATGTCGGTCGGTGGTTGGAACAC
ATGGAGTCGTTTACCGATGCAGACCGGGCGGCGTGGCCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15520:1220..1411+

>mRNA_P-wetherbeei_contig15520.2.1 ID=mRNA_P-wetherbeei_contig15520.2.1|Name=mRNA_P-wetherbeei_contig15520.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig15520:1220..1411+ (Phaeothamnion wetherbeei SAG_119_79)
GACGTCGCGGGGTTGAACGACCATCTGCTCGTCTTTTCGTACGTCGGGGG
CTACGTCCCGGCGCACGGCGATGCCAAGGCGTTTGCGGTGGTGGCGCCGC
GGGCGGCGGAGGTGGCGGCGCTCCCGAATGTCGGTCGGTGGTTGGAACAC
ATGGAGTCGTTTACCGATGCAGACCGGGCGGCGTGGCCGTGA
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