mRNA_P-wetherbeei_contig1552.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1552.1.1
Unique NamemRNA_P-wetherbeei_contig1552.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1552.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1552contigP-wetherbeei_contig1552:1738..5503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3766
Hectar predicted targeting categoryother localisation
Exons1
Cds size3510
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186058.737243-UTR-P-wetherbeei_contig1552:1737..18251683186058.737243-UTR-P-wetherbeei_contig1552:1737..1825Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1552 1738..1825 +
1683186058.7561674-UTR-P-wetherbeei_contig1552:5335..55031683186058.7561674-UTR-P-wetherbeei_contig1552:5335..5503Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1552 5336..5503 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186058.7478843-CDS-P-wetherbeei_contig1552:1825..53351683186058.7478843-CDS-P-wetherbeei_contig1552:1825..5335Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1552 1826..5335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1552.1.1prot_P-wetherbeei_contig1552.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1552 1826..5335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1552.1.1

>prot_P-wetherbeei_contig1552.1.1 ID=prot_P-wetherbeei_contig1552.1.1|Name=mRNA_P-wetherbeei_contig1552.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=1170bp
MSEKAGVDTEASNSESGRVSLVAGAATATAAIEVLAALSERPDVCDRILG
SGSDLSCICDLICRAAEPSSRGSALWPAARQALRCMRLLTAMPLPPSDGA
SASGVDDAGTAVAAPARLLLRLGLDARQRLDAVIRLADEDTAPDDLVRSV
FNLVVATPSASRSTETALLAVAAASPVLDSIIRQRSFVLLAGLLRLSGLG
NADGGGRGGDGAQGSKDLERVVNALATALLAACRLGADGGGSGKDESDLA
DAVNPAAAAAAVAAGAVAALLQAWRTDAAFARALRVLVAASGGRSAAIAL
LTAGIVSGIGASAGLAEPPAERGVAVASRILPTALASLLASAHADLRADG
TALFICITDGGADLTALLMRSLHGAGVREAALTSLRTAAFDSGPAASDAL
RAAMRAAMAIAATPATHDLATGAEKTGAPAPAATAAEVALVADICASAAP
LAFEAGRGAPPWLLPSLAALAVAVPRCAAALLRQDAVASALAVASAWAAL
CDYDRSGGGTNRTGGIPAASSGGAVVSDDECVGVLRLVTALASSLPEAAS
AAVSTPGGGIDKLAEVLIAATANAHSPAPRPVAVAEAVLAVLRGLSAAPV
AGRSNLTAMGMSEQLRRGLAACVGGCCGPSSAAASLRVLVSIGEIGELGC
MVAATPGLVSGAAAAVASYAAAAMAGRAAAATAAATSAAPSTPGEDAGTT
AAEVGAVSTAATETPPHVQLGGKEMTDLDVALAAAGLLRCVASSLSVLAG
DDSHGGGGDGGGGTAVAVGAATAMVAILEAGALPSALLHEATLFLLVLSW
ADVALLESAAELDEVFAGGRLAKAVVAQLPTSRCSGFADGGGGSDRGGGD
GNGGSGDSGGGCSEAALDEAVRLATAWSGLLVSIAGRLGGRKALFEAGAV
RMILGTLLEPPGGIEKSTGPSADADVGRTAAAAATADPVAADLLHVLCVL
SATAEYRAEAKTTLAALTRDCKDGPLVTLARTARRCGAGRWLSLFCSLLG
TPAPVLPAEGRARSAPAPLPPAAGGGASDGCRRREPSLSMATSLAQCGSP
LLPPPSPAQPSSSLPPLSSPPRRPLPTPPPRPSPPPPQVGSATPPRPLGG
GDVDVTGDMGSSYDRADSYRAERERKREPEREREVRCSNGGCRTQLFLPE
GLDPSSIACPNCGTPVAPP*
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mRNA from alignment at P-wetherbeei_contig1552:1738..5503+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1552.1.1 ID=mRNA_P-wetherbeei_contig1552.1.1|Name=mRNA_P-wetherbeei_contig1552.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3766bp|location=Sequence derived from alignment at P-wetherbeei_contig1552:1738..5503+ (Phaeothamnion wetherbeei SAG_119_79)
TGCGGGTACTGCTCTTGTCGCTCGTGGTGTCGTTCCCGGGCTGACGCGGC
TTGTGTCCGCGGTGCTGGGAACGGCTGCCGCTCCGAGCATGTCGGAGAAG
GCAGGCGTCGATACTGAAGCGTCAAACTCGGAGAGCGGGCGGGTTTCTTT
GGTAGCGGGAGCAGCGACGGCGACGGCCGCAATCGAGGTGCTTGCGGCGC
TCAGCGAGCGTCCCGACGTTTGTGACCGCATCCTCGGCAGCGGCAGCGAT
CTGTCGTGCATCTGCGACTTAATCTGCCGCGCCGCTGAGCCAAGCAGCCG
CGGCAGTGCGCTGTGGCCAGCAGCGAGGCAGGCGCTGCGCTGTATGCGCT
TGCTGACGGCAATGCCGCTGCCGCCATCGGACGGAGCGTCGGCAAGCGGC
GTCGATGACGCGGGGACGGCGGTGGCAGCGCCCGCGCGTCTGCTGCTGCG
CTTGGGCCTTGACGCCAGGCAACGGCTCGATGCTGTTATCCGCTTGGCTG
ACGAAGACACCGCTCCGGACGACCTGGTGCGCTCTGTTTTCAACTTGGTG
GTGGCGACACCTTCCGCGTCGCGTTCGACGGAGACGGCGCTGTTGGCCGT
GGCTGCGGCATCGCCGGTGCTCGATTCAATTATCAGACAGCGGAGTTTTG
TGTTGTTGGCGGGCCTTCTACGGCTTTCCGGCTTGGGGAACGCTGACGGT
GGCGGCCGCGGCGGCGATGGCGCCCAAGGCTCGAAAGACCTGGAACGTGT
AGTCAATGCTTTGGCAACAGCCCTTCTGGCGGCGTGTCGACTTGGGGCGG
ATGGCGGTGGCAGTGGCAAAGATGAGAGCGACCTGGCCGACGCCGTTAAC
CCGGCAGCTGCTGCGGCCGCTGTCGCGGCAGGCGCAGTGGCGGCGCTGCT
GCAGGCGTGGCGCACCGACGCTGCCTTTGCGAGGGCGCTTCGGGTACTGG
TTGCTGCCAGTGGCGGCCGCTCTGCCGCGATTGCGCTATTGACTGCCGGA
ATCGTGTCCGGGATTGGCGCCAGCGCTGGCTTGGCGGAACCGCCGGCGGA
GCGTGGCGTCGCCGTGGCGTCCCGAATTCTCCCGACGGCCTTAGCATCTC
TGTTGGCCTCCGCCCATGCCGACCTGCGAGCCGACGGCACCGCCTTGTTT
ATCTGCATCACCGACGGCGGCGCGGACTTGACGGCGCTGCTGATGCGGAG
CTTGCACGGCGCCGGGGTGCGGGAAGCGGCGCTGACGTCGCTGCGGACGG
CCGCCTTCGACAGCGGGCCCGCAGCTTCGGACGCCCTGCGTGCGGCGATG
CGCGCTGCCATGGCGATCGCCGCGACGCCGGCAACGCACGACCTGGCGAC
GGGAGCGGAAAAAACGGGCGCGCCGGCGCCCGCAGCGACGGCGGCAGAGG
TGGCCTTGGTTGCGGACATCTGTGCTTCTGCGGCGCCGCTGGCCTTTGAA
GCGGGCAGGGGTGCTCCCCCGTGGCTGCTTCCGTCATTGGCAGCGCTGGC
AGTGGCGGTGCCGCGGTGTGCGGCTGCATTGCTTCGCCAGGACGCGGTGG
CATCCGCTCTGGCAGTTGCATCTGCCTGGGCAGCGCTTTGCGACTACGAT
CGTAGCGGCGGCGGCACTAACAGGACCGGCGGGATCCCCGCTGCCTCGTC
CGGAGGTGCCGTTGTCAGCGACGACGAGTGCGTCGGCGTGCTTCGCCTGG
TCACGGCGCTGGCTTCGTCGCTTCCAGAGGCAGCCAGCGCCGCCGTATCG
ACCCCGGGGGGGGGCATTGACAAGCTCGCAGAAGTTTTGATAGCGGCTAC
CGCCAACGCTCACAGCCCAGCGCCGAGGCCTGTGGCCGTGGCGGAAGCTG
TGCTTGCCGTGCTTCGGGGATTGTCGGCAGCTCCTGTGGCAGGACGGAGC
AATTTAACGGCCATGGGCATGTCGGAGCAGCTGCGGCGGGGGCTTGCCGC
TTGCGTCGGCGGCTGCTGCGGACCGTCTTCGGCGGCGGCGTCGCTGCGGG
TCCTTGTAAGCATCGGGGAGATTGGTGAGCTCGGCTGCATGGTCGCCGCC
ACACCGGGCCTGGTTTCTGGTGCCGCGGCAGCTGTGGCCTCTTACGCCGC
CGCCGCGATGGCGGGAAGGGCGGCGGCGGCAACAGCGGCCGCGACATCCG
CGGCACCATCCACGCCAGGGGAAGATGCTGGCACAACTGCGGCGGAAGTA
GGAGCGGTGTCGACTGCAGCAACGGAAACGCCGCCGCACGTGCAACTTGG
CGGCAAGGAGATGACGGATTTAGACGTGGCTTTGGCAGCGGCAGGCCTGC
TGCGGTGCGTGGCGTCCTCCCTCTCCGTCCTAGCCGGCGACGACTCTCAT
GGCGGCGGCGGCGACGGTGGCGGCGGCACGGCAGTCGCCGTGGGTGCAGC
GACGGCGATGGTGGCGATTTTGGAGGCCGGCGCGCTCCCGTCGGCGCTGC
TTCACGAAGCCACGTTGTTTCTGCTGGTGCTGTCGTGGGCTGACGTCGCA
TTGCTCGAGTCGGCAGCCGAGCTGGACGAGGTTTTTGCCGGCGGGCGCCT
CGCCAAGGCCGTCGTGGCCCAATTGCCAACGTCACGTTGCAGCGGCTTCG
CCGACGGTGGCGGCGGCAGCGATCGCGGTGGCGGCGACGGCAACGGCGGA
AGCGGAGACAGTGGCGGCGGCTGCAGCGAGGCTGCACTGGATGAGGCGGT
GCGATTGGCGACCGCTTGGAGCGGCCTGCTGGTGAGCATCGCGGGGCGGC
TTGGCGGACGAAAGGCGCTCTTCGAAGCGGGTGCAGTACGCATGATCCTT
GGGACCCTTCTGGAGCCACCAGGTGGCATTGAGAAATCTACCGGTCCTTC
CGCCGATGCCGACGTCGGAAGGACCGCTGCCGCCGCCGCGACTGCGGATC
CTGTGGCCGCAGATCTGCTTCACGTGCTATGCGTGCTGAGCGCGACGGCT
GAATACCGCGCCGAGGCAAAAACGACCCTCGCCGCGTTGACACGTGACTG
CAAGGATGGACCGCTGGTTACGCTGGCCCGCACCGCGCGACGCTGCGGCG
CAGGCCGGTGGCTGTCGCTCTTCTGCTCCCTGCTGGGCACGCCTGCCCCG
GTCCTGCCGGCGGAGGGCAGAGCAAGGTCCGCGCCGGCACCCCTGCCGCC
GGCAGCCGGGGGGGGGGCATCGGACGGCTGTCGGCGGCGCGAGCCGTCGC
TGTCAATGGCAACTTCGCTCGCGCAGTGCGGTTCGCCACTGCTGCCACCG
CCCTCGCCGGCGCAGCCGTCGTCATCGCTGCCGCCGCTCTCTTCCCCGCC
GCGGCGGCCTCTGCCTACGCCGCCTCCGCGGCCATCGCCGCCGCCGCCGC
AGGTAGGGTCGGCCACGCCCCCGCGGCCGCTCGGCGGCGGCGACGTGGAC
GTCACCGGCGATATGGGCTCGTCCTACGACCGGGCAGACTCGTACCGTGC
GGAGAGGGAACGGAAGCGGGAGCCAGAAAGGGAAAGAGAGGTGCGCTGCA
GCAACGGCGGCTGCCGCACGCAGCTCTTCCTCCCTGAGGGCCTCGACCCG
TCATCAATCGCCTGCCCCAACTGCGGAACGCCTGTCGCACCGCCGTGACG
CTTGGTGGGTTTGGTGCCTTGTGGCGAGCTGCCGGTGAGGCTGCACAATT
TGTCAAAATGTGCATACAAGACCAGACGTATCGGTTCCCTGAGACAAAAA
TCAGAAAGCCTTCTGTGCAGGCTTTGCGTAGCAATAAAACTGTATGCATG
TAAATAAAAGCCAGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1552:1738..5503+

>mRNA_P-wetherbeei_contig1552.1.1 ID=mRNA_P-wetherbeei_contig1552.1.1|Name=mRNA_P-wetherbeei_contig1552.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=3510bp|location=Sequence derived from alignment at P-wetherbeei_contig1552:1738..5503+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGAGAAGGCAGGCGTCGATACTGAAGCGTCAAACTCGGAGAGCGG
GCGGGTTTCTTTGGTAGCGGGAGCAGCGACGGCGACGGCCGCAATCGAGG
TGCTTGCGGCGCTCAGCGAGCGTCCCGACGTTTGTGACCGCATCCTCGGC
AGCGGCAGCGATCTGTCGTGCATCTGCGACTTAATCTGCCGCGCCGCTGA
GCCAAGCAGCCGCGGCAGTGCGCTGTGGCCAGCAGCGAGGCAGGCGCTGC
GCTGTATGCGCTTGCTGACGGCAATGCCGCTGCCGCCATCGGACGGAGCG
TCGGCAAGCGGCGTCGATGACGCGGGGACGGCGGTGGCAGCGCCCGCGCG
TCTGCTGCTGCGCTTGGGCCTTGACGCCAGGCAACGGCTCGATGCTGTTA
TCCGCTTGGCTGACGAAGACACCGCTCCGGACGACCTGGTGCGCTCTGTT
TTCAACTTGGTGGTGGCGACACCTTCCGCGTCGCGTTCGACGGAGACGGC
GCTGTTGGCCGTGGCTGCGGCATCGCCGGTGCTCGATTCAATTATCAGAC
AGCGGAGTTTTGTGTTGTTGGCGGGCCTTCTACGGCTTTCCGGCTTGGGG
AACGCTGACGGTGGCGGCCGCGGCGGCGATGGCGCCCAAGGCTCGAAAGA
CCTGGAACGTGTAGTCAATGCTTTGGCAACAGCCCTTCTGGCGGCGTGTC
GACTTGGGGCGGATGGCGGTGGCAGTGGCAAAGATGAGAGCGACCTGGCC
GACGCCGTTAACCCGGCAGCTGCTGCGGCCGCTGTCGCGGCAGGCGCAGT
GGCGGCGCTGCTGCAGGCGTGGCGCACCGACGCTGCCTTTGCGAGGGCGC
TTCGGGTACTGGTTGCTGCCAGTGGCGGCCGCTCTGCCGCGATTGCGCTA
TTGACTGCCGGAATCGTGTCCGGGATTGGCGCCAGCGCTGGCTTGGCGGA
ACCGCCGGCGGAGCGTGGCGTCGCCGTGGCGTCCCGAATTCTCCCGACGG
CCTTAGCATCTCTGTTGGCCTCCGCCCATGCCGACCTGCGAGCCGACGGC
ACCGCCTTGTTTATCTGCATCACCGACGGCGGCGCGGACTTGACGGCGCT
GCTGATGCGGAGCTTGCACGGCGCCGGGGTGCGGGAAGCGGCGCTGACGT
CGCTGCGGACGGCCGCCTTCGACAGCGGGCCCGCAGCTTCGGACGCCCTG
CGTGCGGCGATGCGCGCTGCCATGGCGATCGCCGCGACGCCGGCAACGCA
CGACCTGGCGACGGGAGCGGAAAAAACGGGCGCGCCGGCGCCCGCAGCGA
CGGCGGCAGAGGTGGCCTTGGTTGCGGACATCTGTGCTTCTGCGGCGCCG
CTGGCCTTTGAAGCGGGCAGGGGTGCTCCCCCGTGGCTGCTTCCGTCATT
GGCAGCGCTGGCAGTGGCGGTGCCGCGGTGTGCGGCTGCATTGCTTCGCC
AGGACGCGGTGGCATCCGCTCTGGCAGTTGCATCTGCCTGGGCAGCGCTT
TGCGACTACGATCGTAGCGGCGGCGGCACTAACAGGACCGGCGGGATCCC
CGCTGCCTCGTCCGGAGGTGCCGTTGTCAGCGACGACGAGTGCGTCGGCG
TGCTTCGCCTGGTCACGGCGCTGGCTTCGTCGCTTCCAGAGGCAGCCAGC
GCCGCCGTATCGACCCCGGGGGGGGGCATTGACAAGCTCGCAGAAGTTTT
GATAGCGGCTACCGCCAACGCTCACAGCCCAGCGCCGAGGCCTGTGGCCG
TGGCGGAAGCTGTGCTTGCCGTGCTTCGGGGATTGTCGGCAGCTCCTGTG
GCAGGACGGAGCAATTTAACGGCCATGGGCATGTCGGAGCAGCTGCGGCG
GGGGCTTGCCGCTTGCGTCGGCGGCTGCTGCGGACCGTCTTCGGCGGCGG
CGTCGCTGCGGGTCCTTGTAAGCATCGGGGAGATTGGTGAGCTCGGCTGC
ATGGTCGCCGCCACACCGGGCCTGGTTTCTGGTGCCGCGGCAGCTGTGGC
CTCTTACGCCGCCGCCGCGATGGCGGGAAGGGCGGCGGCGGCAACAGCGG
CCGCGACATCCGCGGCACCATCCACGCCAGGGGAAGATGCTGGCACAACT
GCGGCGGAAGTAGGAGCGGTGTCGACTGCAGCAACGGAAACGCCGCCGCA
CGTGCAACTTGGCGGCAAGGAGATGACGGATTTAGACGTGGCTTTGGCAG
CGGCAGGCCTGCTGCGGTGCGTGGCGTCCTCCCTCTCCGTCCTAGCCGGC
GACGACTCTCATGGCGGCGGCGGCGACGGTGGCGGCGGCACGGCAGTCGC
CGTGGGTGCAGCGACGGCGATGGTGGCGATTTTGGAGGCCGGCGCGCTCC
CGTCGGCGCTGCTTCACGAAGCCACGTTGTTTCTGCTGGTGCTGTCGTGG
GCTGACGTCGCATTGCTCGAGTCGGCAGCCGAGCTGGACGAGGTTTTTGC
CGGCGGGCGCCTCGCCAAGGCCGTCGTGGCCCAATTGCCAACGTCACGTT
GCAGCGGCTTCGCCGACGGTGGCGGCGGCAGCGATCGCGGTGGCGGCGAC
GGCAACGGCGGAAGCGGAGACAGTGGCGGCGGCTGCAGCGAGGCTGCACT
GGATGAGGCGGTGCGATTGGCGACCGCTTGGAGCGGCCTGCTGGTGAGCA
TCGCGGGGCGGCTTGGCGGACGAAAGGCGCTCTTCGAAGCGGGTGCAGTA
CGCATGATCCTTGGGACCCTTCTGGAGCCACCAGGTGGCATTGAGAAATC
TACCGGTCCTTCCGCCGATGCCGACGTCGGAAGGACCGCTGCCGCCGCCG
CGACTGCGGATCCTGTGGCCGCAGATCTGCTTCACGTGCTATGCGTGCTG
AGCGCGACGGCTGAATACCGCGCCGAGGCAAAAACGACCCTCGCCGCGTT
GACACGTGACTGCAAGGATGGACCGCTGGTTACGCTGGCCCGCACCGCGC
GACGCTGCGGCGCAGGCCGGTGGCTGTCGCTCTTCTGCTCCCTGCTGGGC
ACGCCTGCCCCGGTCCTGCCGGCGGAGGGCAGAGCAAGGTCCGCGCCGGC
ACCCCTGCCGCCGGCAGCCGGGGGGGGGGCATCGGACGGCTGTCGGCGGC
GCGAGCCGTCGCTGTCAATGGCAACTTCGCTCGCGCAGTGCGGTTCGCCA
CTGCTGCCACCGCCCTCGCCGGCGCAGCCGTCGTCATCGCTGCCGCCGCT
CTCTTCCCCGCCGCGGCGGCCTCTGCCTACGCCGCCTCCGCGGCCATCGC
CGCCGCCGCCGCAGGTAGGGTCGGCCACGCCCCCGCGGCCGCTCGGCGGC
GGCGACGTGGACGTCACCGGCGATATGGGCTCGTCCTACGACCGGGCAGA
CTCGTACCGTGCGGAGAGGGAACGGAAGCGGGAGCCAGAAAGGGAAAGAG
AGGTGCGCTGCAGCAACGGCGGCTGCCGCACGCAGCTCTTCCTCCCTGAG
GGCCTCGACCCGTCATCAATCGCCTGCCCCAACTGCGGAACGCCTGTCGC
ACCGCCGTGA
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